Experiment: Ceftazidime 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_00290 and AO356_00295 are separated by 132 nucleotides AO356_00295 and AO356_00300 are separated by 229 nucleotides
AO356_00290: AO356_00290 - DNA primase, at 52,921 to 53,883
_00290
AO356_00295: AO356_00295 - hypothetical protein, at 54,016 to 54,210
_00295
AO356_00300: AO356_00300 - relaxase, at 54,440 to 56,164
_00300
Position (kb) 54
55 Strain fitness (log2 ratio) -2
-1
0
1
2 at 53.213 kb on - strand, within AO356_00290 at 53.213 kb on - strand, within AO356_00290 at 53.426 kb on + strand, within AO356_00290 at 53.426 kb on + strand, within AO356_00290 at 53.426 kb on + strand, within AO356_00290 at 53.427 kb on - strand, within AO356_00290 at 53.442 kb on + strand, within AO356_00290 at 53.442 kb on + strand, within AO356_00290 at 53.537 kb on - strand, within AO356_00290 at 53.539 kb on + strand, within AO356_00290 at 53.539 kb on + strand, within AO356_00290 at 53.540 kb on - strand, within AO356_00290 at 53.638 kb on + strand, within AO356_00290 at 53.682 kb on - strand, within AO356_00290 at 53.689 kb on + strand, within AO356_00290 at 53.690 kb on - strand, within AO356_00290 at 53.809 kb on + strand at 54.042 kb on - strand, within AO356_00295 at 54.042 kb on - strand, within AO356_00295 at 54.083 kb on + strand, within AO356_00295 at 54.083 kb on + strand, within AO356_00295 at 54.165 kb on + strand, within AO356_00295 at 54.165 kb on + strand, within AO356_00295 at 54.166 kb on - strand, within AO356_00295 at 54.166 kb on - strand, within AO356_00295 at 54.184 kb on + strand, within AO356_00295 at 54.213 kb on + strand at 54.214 kb on - strand at 54.214 kb on - strand at 54.214 kb on - strand at 54.263 kb on + strand at 54.300 kb on + strand at 54.300 kb on + strand at 54.301 kb on - strand at 54.306 kb on + strand at 54.380 kb on + strand at 54.402 kb on + strand at 54.509 kb on + strand at 54.510 kb on - strand at 54.510 kb on - strand at 54.510 kb on - strand at 54.585 kb on - strand at 54.585 kb on - strand at 54.620 kb on + strand, within AO356_00300 at 54.620 kb on + strand, within AO356_00300 at 54.620 kb on + strand, within AO356_00300 at 54.625 kb on - strand, within AO356_00300 at 54.625 kb on - strand, within AO356_00300 at 54.625 kb on - strand, within AO356_00300 at 54.642 kb on - strand, within AO356_00300 at 54.692 kb on + strand, within AO356_00300 at 54.693 kb on - strand, within AO356_00300 at 54.758 kb on + strand, within AO356_00300 at 54.759 kb on - strand, within AO356_00300 at 54.947 kb on + strand, within AO356_00300 at 54.947 kb on + strand, within AO356_00300 at 54.966 kb on - strand, within AO356_00300 at 54.999 kb on - strand, within AO356_00300 at 54.999 kb on - strand, within AO356_00300 at 54.999 kb on - strand, within AO356_00300 at 55.070 kb on + strand, within AO356_00300 at 55.070 kb on + strand, within AO356_00300 at 55.071 kb on - strand, within AO356_00300 at 55.071 kb on - strand, within AO356_00300 at 55.071 kb on - strand, within AO356_00300 at 55.071 kb on - strand, within AO356_00300 at 55.089 kb on - strand, within AO356_00300 at 55.200 kb on + strand, within AO356_00300 at 55.201 kb on - strand, within AO356_00300
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.2 mg/ml remove 53,213 - AO356_00290 0.30 -0.5 53,213 - AO356_00290 0.30 -0.3 53,426 + AO356_00290 0.52 -1.0 53,426 + AO356_00290 0.52 +0.5 53,426 + AO356_00290 0.52 +0.1 53,427 - AO356_00290 0.53 -0.9 53,442 + AO356_00290 0.54 +0.5 53,442 + AO356_00290 0.54 -0.3 53,537 - AO356_00290 0.64 +0.3 53,539 + AO356_00290 0.64 -0.8 53,539 + AO356_00290 0.64 +0.1 53,540 - AO356_00290 0.64 -0.7 53,638 + AO356_00290 0.74 -0.2 53,682 - AO356_00290 0.79 +0.2 53,689 + AO356_00290 0.80 -0.4 53,690 - AO356_00290 0.80 -1.5 53,809 + -0.1 54,042 - AO356_00295 0.13 -2.2 54,042 - AO356_00295 0.13 -0.9 54,083 + AO356_00295 0.34 -0.4 54,083 + AO356_00295 0.34 -1.3 54,165 + AO356_00295 0.76 -1.1 54,165 + AO356_00295 0.76 +0.1 54,166 - AO356_00295 0.77 -2.2 54,166 - AO356_00295 0.77 +0.6 54,184 + AO356_00295 0.86 +1.0 54,213 + +0.2 54,214 - +0.2 54,214 - -0.3 54,214 - +1.6 54,263 + +0.8 54,300 + +0.7 54,300 + -1.2 54,301 - -0.1 54,306 + +0.9 54,380 + +0.9 54,402 + -0.2 54,509 + +0.5 54,510 - -1.9 54,510 - -0.8 54,510 - +0.2 54,585 - -0.4 54,585 - +2.4 54,620 + AO356_00300 0.10 -0.4 54,620 + AO356_00300 0.10 -0.5 54,620 + AO356_00300 0.10 +0.6 54,625 - AO356_00300 0.11 +0.5 54,625 - AO356_00300 0.11 -0.5 54,625 - AO356_00300 0.11 +1.0 54,642 - AO356_00300 0.12 +0.5 54,692 + AO356_00300 0.15 +0.7 54,693 - AO356_00300 0.15 +0.5 54,758 + AO356_00300 0.18 -0.3 54,759 - AO356_00300 0.18 +0.5 54,947 + AO356_00300 0.29 -1.2 54,947 + AO356_00300 0.29 +1.0 54,966 - AO356_00300 0.30 +0.0 54,999 - AO356_00300 0.32 +0.5 54,999 - AO356_00300 0.32 +0.7 54,999 - AO356_00300 0.32 +0.1 55,070 + AO356_00300 0.37 -0.1 55,070 + AO356_00300 0.37 +0.5 55,071 - AO356_00300 0.37 +0.9 55,071 - AO356_00300 0.37 +0.7 55,071 - AO356_00300 0.37 +1.1 55,071 - AO356_00300 0.37 -0.3 55,089 - AO356_00300 0.38 -0.4 55,200 + AO356_00300 0.44 +0.8 55,201 - AO356_00300 0.44 +0.1
Or see this region's nucleotide sequence