Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_00290

Experiment: Ceftazidime 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_00280 and AO356_00285 are separated by 460 nucleotidesAO356_00285 and AO356_00290 are separated by 130 nucleotidesAO356_00290 and AO356_00295 are separated by 132 nucleotidesAO356_00295 and AO356_00300 are separated by 229 nucleotides AO356_00280: AO356_00280 - hypothetical protein, at 51,605 to 52,000 _00280 AO356_00285: AO356_00285 - hypothetical protein, at 52,461 to 52,790 _00285 AO356_00290: AO356_00290 - DNA primase, at 52,921 to 53,883 _00290 AO356_00295: AO356_00295 - hypothetical protein, at 54,016 to 54,210 _00295 AO356_00300: AO356_00300 - relaxase, at 54,440 to 56,164 _00300 Position (kb) 52 53 54Strain fitness (log2 ratio) -2 -1 0 1 2at 51.940 kb on + strand, within AO356_00280at 51.941 kb on - strand, within AO356_00280at 51.951 kb on + strand, within AO356_00280at 51.951 kb on + strand, within AO356_00280at 52.022 kb on + strandat 52.050 kb on + strandat 52.050 kb on + strandat 52.050 kb on + strandat 52.050 kb on + strandat 52.050 kb on + strandat 52.051 kb on - strandat 52.051 kb on - strandat 52.051 kb on - strandat 52.051 kb on - strandat 52.051 kb on - strandat 52.053 kb on + strandat 52.149 kb on + strandat 52.170 kb on - strandat 52.170 kb on - strandat 52.180 kb on + strandat 52.180 kb on + strandat 52.180 kb on + strandat 52.181 kb on - strandat 52.181 kb on - strandat 52.184 kb on + strandat 52.191 kb on + strandat 52.245 kb on - strandat 52.245 kb on - strandat 52.312 kb on - strandat 52.319 kb on + strandat 52.455 kb on + strandat 52.455 kb on + strandat 52.455 kb on + strandat 52.455 kb on + strandat 52.456 kb on - strandat 52.456 kb on - strandat 52.471 kb on + strandat 52.543 kb on + strand, within AO356_00285at 52.544 kb on - strand, within AO356_00285at 52.647 kb on + strand, within AO356_00285at 52.647 kb on + strand, within AO356_00285at 52.647 kb on + strand, within AO356_00285at 52.648 kb on - strand, within AO356_00285at 52.648 kb on - strand, within AO356_00285at 52.683 kb on - strand, within AO356_00285at 52.749 kb on - strand, within AO356_00285at 52.831 kb on - strandat 52.831 kb on - strandat 52.832 kb on + strandat 52.832 kb on + strandat 52.930 kb on - strandat 52.930 kb on - strandat 52.933 kb on + strandat 52.933 kb on + strandat 52.933 kb on + strandat 52.934 kb on - strandat 52.934 kb on - strandat 52.968 kb on - strandat 53.213 kb on - strand, within AO356_00290at 53.213 kb on - strand, within AO356_00290at 53.426 kb on + strand, within AO356_00290at 53.426 kb on + strand, within AO356_00290at 53.426 kb on + strand, within AO356_00290at 53.427 kb on - strand, within AO356_00290at 53.442 kb on + strand, within AO356_00290at 53.442 kb on + strand, within AO356_00290at 53.537 kb on - strand, within AO356_00290at 53.539 kb on + strand, within AO356_00290at 53.539 kb on + strand, within AO356_00290at 53.540 kb on - strand, within AO356_00290at 53.638 kb on + strand, within AO356_00290at 53.682 kb on - strand, within AO356_00290at 53.689 kb on + strand, within AO356_00290at 53.690 kb on - strand, within AO356_00290at 53.809 kb on + strandat 54.042 kb on - strand, within AO356_00295at 54.042 kb on - strand, within AO356_00295at 54.083 kb on + strand, within AO356_00295at 54.083 kb on + strand, within AO356_00295at 54.165 kb on + strand, within AO356_00295at 54.165 kb on + strand, within AO356_00295at 54.166 kb on - strand, within AO356_00295at 54.166 kb on - strand, within AO356_00295at 54.184 kb on + strand, within AO356_00295at 54.213 kb on + strandat 54.214 kb on - strandat 54.214 kb on - strandat 54.214 kb on - strandat 54.263 kb on + strandat 54.300 kb on + strandat 54.300 kb on + strandat 54.301 kb on - strandat 54.306 kb on + strandat 54.380 kb on + strandat 54.402 kb on + strandat 54.509 kb on + strandat 54.510 kb on - strandat 54.510 kb on - strandat 54.510 kb on - strandat 54.585 kb on - strandat 54.585 kb on - strandat 54.620 kb on + strand, within AO356_00300at 54.620 kb on + strand, within AO356_00300at 54.620 kb on + strand, within AO356_00300at 54.625 kb on - strand, within AO356_00300at 54.625 kb on - strand, within AO356_00300at 54.625 kb on - strand, within AO356_00300at 54.642 kb on - strand, within AO356_00300at 54.692 kb on + strand, within AO356_00300at 54.693 kb on - strand, within AO356_00300at 54.758 kb on + strand, within AO356_00300at 54.759 kb on - strand, within AO356_00300

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Per-strain Table

Position Strand Gene LocusTag Fraction Ceftazidime 0.2 mg/ml
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51,940 + AO356_00280 0.85 +0.3
51,941 - AO356_00280 0.85 +0.3
51,951 + AO356_00280 0.87 -0.3
51,951 + AO356_00280 0.87 +0.1
52,022 + -2.0
52,050 + -1.2
52,050 + +0.4
52,050 + +0.2
52,050 + +0.5
52,050 + +0.4
52,051 - -0.2
52,051 - +0.4
52,051 - -0.5
52,051 - +1.2
52,051 - +0.6
52,053 + -0.7
52,149 + -0.0
52,170 - +1.1
52,170 - -0.9
52,180 + +0.0
52,180 + -0.3
52,180 + +0.3
52,181 - +1.3
52,181 - +1.5
52,184 + +0.5
52,191 + -0.4
52,245 - -1.8
52,245 - +0.2
52,312 - +0.6
52,319 + -2.4
52,455 + +0.9
52,455 + +0.4
52,455 + +0.3
52,455 + +0.5
52,456 - +0.4
52,456 - +0.3
52,471 + -0.2
52,543 + AO356_00285 0.25 +0.3
52,544 - AO356_00285 0.25 +0.7
52,647 + AO356_00285 0.56 +0.1
52,647 + AO356_00285 0.56 -0.2
52,647 + AO356_00285 0.56 +0.1
52,648 - AO356_00285 0.57 +0.3
52,648 - AO356_00285 0.57 +0.1
52,683 - AO356_00285 0.67 -0.2
52,749 - AO356_00285 0.87 +0.9
52,831 - -0.3
52,831 - -2.7
52,832 + +0.9
52,832 + +0.7
52,930 - +1.1
52,930 - +0.5
52,933 + +0.6
52,933 + +0.2
52,933 + +0.4
52,934 - +0.6
52,934 - +0.4
52,968 - -0.9
53,213 - AO356_00290 0.30 -0.5
53,213 - AO356_00290 0.30 -0.3
53,426 + AO356_00290 0.52 -1.0
53,426 + AO356_00290 0.52 +0.5
53,426 + AO356_00290 0.52 +0.1
53,427 - AO356_00290 0.53 -0.9
53,442 + AO356_00290 0.54 +0.5
53,442 + AO356_00290 0.54 -0.3
53,537 - AO356_00290 0.64 +0.3
53,539 + AO356_00290 0.64 -0.8
53,539 + AO356_00290 0.64 +0.1
53,540 - AO356_00290 0.64 -0.7
53,638 + AO356_00290 0.74 -0.2
53,682 - AO356_00290 0.79 +0.2
53,689 + AO356_00290 0.80 -0.4
53,690 - AO356_00290 0.80 -1.5
53,809 + -0.1
54,042 - AO356_00295 0.13 -2.2
54,042 - AO356_00295 0.13 -0.9
54,083 + AO356_00295 0.34 -0.4
54,083 + AO356_00295 0.34 -1.3
54,165 + AO356_00295 0.76 -1.1
54,165 + AO356_00295 0.76 +0.1
54,166 - AO356_00295 0.77 -2.2
54,166 - AO356_00295 0.77 +0.6
54,184 + AO356_00295 0.86 +1.0
54,213 + +0.2
54,214 - +0.2
54,214 - -0.3
54,214 - +1.6
54,263 + +0.8
54,300 + +0.7
54,300 + -1.2
54,301 - -0.1
54,306 + +0.9
54,380 + +0.9
54,402 + -0.2
54,509 + +0.5
54,510 - -1.9
54,510 - -0.8
54,510 - +0.2
54,585 - -0.4
54,585 - +2.4
54,620 + AO356_00300 0.10 -0.4
54,620 + AO356_00300 0.10 -0.5
54,620 + AO356_00300 0.10 +0.6
54,625 - AO356_00300 0.11 +0.5
54,625 - AO356_00300 0.11 -0.5
54,625 - AO356_00300 0.11 +1.0
54,642 - AO356_00300 0.12 +0.5
54,692 + AO356_00300 0.15 +0.7
54,693 - AO356_00300 0.15 +0.5
54,758 + AO356_00300 0.18 -0.3
54,759 - AO356_00300 0.18 +0.5

Or see this region's nucleotide sequence