Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_000586

Experiment: Plant outgrowth control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_000585 and ABIE53_000586 are separated by 11 nucleotidesABIE53_000586 and ABIE53_000587 are separated by 632 nucleotides ABIE53_000585: ABIE53_000585 - hemolysin activation/secretion protein, at 640,797 to 642,551 _000585 ABIE53_000586: ABIE53_000586 - dienelactone hydrolase, at 642,563 to 643,879 _000586 ABIE53_000587: ABIE53_000587 - SEC-C motif-containing protein, at 644,512 to 644,961 _000587 Position (kb) 642 643 644Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 641.584 kb on + strand, within ABIE53_000585at 641.584 kb on + strand, within ABIE53_000585at 641.584 kb on + strand, within ABIE53_000585at 641.584 kb on + strand, within ABIE53_000585at 641.585 kb on - strand, within ABIE53_000585at 641.597 kb on + strand, within ABIE53_000585at 641.597 kb on + strand, within ABIE53_000585at 641.597 kb on + strand, within ABIE53_000585at 641.727 kb on + strand, within ABIE53_000585at 641.763 kb on + strand, within ABIE53_000585at 641.763 kb on + strand, within ABIE53_000585at 641.763 kb on + strand, within ABIE53_000585at 641.763 kb on + strand, within ABIE53_000585at 641.763 kb on + strand, within ABIE53_000585at 641.763 kb on + strand, within ABIE53_000585at 641.764 kb on - strand, within ABIE53_000585at 641.764 kb on - strand, within ABIE53_000585at 641.764 kb on - strand, within ABIE53_000585at 641.764 kb on - strand, within ABIE53_000585at 641.764 kb on - strand, within ABIE53_000585at 641.764 kb on - strand, within ABIE53_000585at 641.764 kb on - strand, within ABIE53_000585at 641.988 kb on + strand, within ABIE53_000585at 641.988 kb on + strand, within ABIE53_000585at 641.989 kb on - strand, within ABIE53_000585at 641.989 kb on - strand, within ABIE53_000585at 642.085 kb on - strand, within ABIE53_000585at 642.201 kb on + strand, within ABIE53_000585at 642.201 kb on + strand, within ABIE53_000585at 642.202 kb on - strand, within ABIE53_000585at 642.205 kb on + strand, within ABIE53_000585at 642.206 kb on - strand, within ABIE53_000585at 642.285 kb on + strand, within ABIE53_000585at 642.286 kb on - strand, within ABIE53_000585at 642.286 kb on - strand, within ABIE53_000585at 642.301 kb on + strand, within ABIE53_000585at 642.301 kb on + strand, within ABIE53_000585at 642.301 kb on + strand, within ABIE53_000585at 642.302 kb on - strand, within ABIE53_000585at 642.302 kb on - strand, within ABIE53_000585at 642.302 kb on - strand, within ABIE53_000585at 642.302 kb on - strand, within ABIE53_000585at 642.302 kb on - strand, within ABIE53_000585at 642.302 kb on - strand, within ABIE53_000585at 642.302 kb on - strand, within ABIE53_000585at 642.336 kb on + strand, within ABIE53_000585at 642.336 kb on + strand, within ABIE53_000585at 642.336 kb on + strand, within ABIE53_000585at 642.337 kb on - strand, within ABIE53_000585at 642.337 kb on - strand, within ABIE53_000585at 642.352 kb on - strand, within ABIE53_000585at 642.352 kb on - strand, within ABIE53_000585at 642.361 kb on + strand, within ABIE53_000585at 642.362 kb on - strand, within ABIE53_000585at 642.422 kb on - strandat 642.459 kb on + strandat 642.549 kb on + strandat 642.574 kb on + strandat 642.575 kb on - strandat 642.580 kb on + strandat 642.652 kb on + strandat 642.653 kb on - strandat 642.705 kb on + strand, within ABIE53_000586at 642.705 kb on + strand, within ABIE53_000586at 642.705 kb on + strand, within ABIE53_000586at 642.706 kb on - strand, within ABIE53_000586at 642.706 kb on - strand, within ABIE53_000586at 642.706 kb on - strand, within ABIE53_000586at 642.876 kb on + strand, within ABIE53_000586at 642.877 kb on - strand, within ABIE53_000586at 642.948 kb on + strand, within ABIE53_000586at 642.948 kb on + strand, within ABIE53_000586at 642.948 kb on + strand, within ABIE53_000586at 643.055 kb on - strand, within ABIE53_000586at 643.055 kb on - strand, within ABIE53_000586at 643.055 kb on - strand, within ABIE53_000586at 643.055 kb on - strand, within ABIE53_000586at 643.056 kb on + strand, within ABIE53_000586at 643.056 kb on + strand, within ABIE53_000586at 643.056 kb on + strand, within ABIE53_000586at 643.056 kb on + strand, within ABIE53_000586at 643.056 kb on + strand, within ABIE53_000586at 643.056 kb on + strand, within ABIE53_000586at 643.057 kb on - strand, within ABIE53_000586at 643.057 kb on - strand, within ABIE53_000586at 643.057 kb on - strand, within ABIE53_000586at 643.057 kb on - strand, within ABIE53_000586at 643.057 kb on - strand, within ABIE53_000586at 643.057 kb on - strand, within ABIE53_000586at 643.057 kb on - strand, within ABIE53_000586at 643.057 kb on - strand, within ABIE53_000586at 643.057 kb on - strand, within ABIE53_000586at 643.101 kb on + strand, within ABIE53_000586at 643.158 kb on + strand, within ABIE53_000586at 643.158 kb on + strand, within ABIE53_000586at 643.158 kb on + strand, within ABIE53_000586at 643.158 kb on + strand, within ABIE53_000586at 643.194 kb on + strand, within ABIE53_000586at 643.305 kb on + strand, within ABIE53_000586at 643.351 kb on + strand, within ABIE53_000586at 643.352 kb on - strand, within ABIE53_000586at 643.368 kb on + strand, within ABIE53_000586at 643.369 kb on - strand, within ABIE53_000586at 643.369 kb on - strand, within ABIE53_000586at 643.369 kb on - strand, within ABIE53_000586at 643.386 kb on + strand, within ABIE53_000586at 643.386 kb on + strand, within ABIE53_000586at 643.386 kb on + strand, within ABIE53_000586at 643.386 kb on + strand, within ABIE53_000586at 643.386 kb on + strand, within ABIE53_000586at 643.386 kb on + strand, within ABIE53_000586at 643.387 kb on - strand, within ABIE53_000586at 643.387 kb on - strand, within ABIE53_000586at 643.387 kb on - strand, within ABIE53_000586at 643.387 kb on - strand, within ABIE53_000586at 643.459 kb on - strand, within ABIE53_000586at 643.459 kb on - strand, within ABIE53_000586at 643.459 kb on - strand, within ABIE53_000586at 643.565 kb on - strand, within ABIE53_000586at 643.607 kb on - strand, within ABIE53_000586at 643.635 kb on + strand, within ABIE53_000586at 643.636 kb on - strand, within ABIE53_000586at 643.636 kb on - strand, within ABIE53_000586at 643.636 kb on - strand, within ABIE53_000586at 643.636 kb on - strand, within ABIE53_000586at 643.719 kb on + strand, within ABIE53_000586at 643.719 kb on + strand, within ABIE53_000586at 643.719 kb on + strand, within ABIE53_000586at 643.719 kb on + strand, within ABIE53_000586at 643.719 kb on + strand, within ABIE53_000586at 643.719 kb on + strand, within ABIE53_000586at 643.719 kb on + strand, within ABIE53_000586at 643.719 kb on + strand, within ABIE53_000586at 643.719 kb on + strand, within ABIE53_000586at 643.719 kb on + strand, within ABIE53_000586at 643.719 kb on + strand, within ABIE53_000586at 643.720 kb on - strand, within ABIE53_000586at 643.720 kb on - strand, within ABIE53_000586at 643.720 kb on - strand, within ABIE53_000586at 643.720 kb on - strand, within ABIE53_000586at 643.949 kb on + strandat 643.949 kb on + strandat 643.949 kb on + strandat 643.949 kb on + strandat 643.949 kb on + strandat 643.949 kb on + strandat 643.949 kb on + strandat 643.950 kb on - strandat 643.950 kb on - strandat 643.950 kb on - strandat 643.993 kb on + strandat 643.994 kb on - strandat 643.994 kb on - strandat 644.161 kb on + strandat 644.162 kb on - strandat 644.338 kb on + strandat 644.338 kb on + strandat 644.338 kb on + strandat 644.339 kb on - strandat 644.339 kb on - strandat 644.339 kb on - strandat 644.339 kb on - strandat 644.358 kb on + strandat 644.359 kb on - strandat 644.359 kb on - strandat 644.359 kb on - strandat 644.474 kb on - strandat 644.521 kb on + strandat 644.521 kb on + strandat 644.521 kb on + strandat 644.521 kb on + strandat 644.521 kb on + strandat 644.522 kb on - strandat 644.522 kb on - strandat 644.522 kb on - strandat 644.522 kb on - strandat 644.522 kb on - strandat 644.537 kb on + strandat 644.538 kb on - strandat 644.575 kb on + strand, within ABIE53_000587at 644.575 kb on + strand, within ABIE53_000587at 644.575 kb on + strand, within ABIE53_000587at 644.612 kb on + strand, within ABIE53_000587at 644.763 kb on - strand, within ABIE53_000587at 644.783 kb on + strand, within ABIE53_000587at 644.783 kb on + strand, within ABIE53_000587at 644.783 kb on + strand, within ABIE53_000587at 644.783 kb on + strand, within ABIE53_000587at 644.783 kb on + strand, within ABIE53_000587at 644.783 kb on + strand, within ABIE53_000587at 644.784 kb on - strand, within ABIE53_000587at 644.784 kb on - strand, within ABIE53_000587at 644.784 kb on - strand, within ABIE53_000587at 644.784 kb on - strand, within ABIE53_000587at 644.784 kb on - strand, within ABIE53_000587at 644.784 kb on - strand, within ABIE53_000587at 644.845 kb on - strand, within ABIE53_000587at 644.846 kb on + strand, within ABIE53_000587at 644.846 kb on + strand, within ABIE53_000587at 644.847 kb on - strand, within ABIE53_000587at 644.847 kb on - strand, within ABIE53_000587at 644.847 kb on - strand, within ABIE53_000587at 644.847 kb on - strand, within ABIE53_000587

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant outgrowth control
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641,584 + ABIE53_000585 0.45 -0.7
641,584 + ABIE53_000585 0.45 -0.8
641,584 + ABIE53_000585 0.45 -0.9
641,584 + ABIE53_000585 0.45 -1.7
641,585 - ABIE53_000585 0.45 +0.3
641,597 + ABIE53_000585 0.46 -2.1
641,597 + ABIE53_000585 0.46 +0.1
641,597 + ABIE53_000585 0.46 -0.9
641,727 + ABIE53_000585 0.53 -0.6
641,763 + ABIE53_000585 0.55 +0.1
641,763 + ABIE53_000585 0.55 -0.4
641,763 + ABIE53_000585 0.55 -0.3
641,763 + ABIE53_000585 0.55 +0.4
641,763 + ABIE53_000585 0.55 +0.5
641,763 + ABIE53_000585 0.55 -0.9
641,764 - ABIE53_000585 0.55 +0.8
641,764 - ABIE53_000585 0.55 -0.2
641,764 - ABIE53_000585 0.55 -1.3
641,764 - ABIE53_000585 0.55 -0.7
641,764 - ABIE53_000585 0.55 -0.1
641,764 - ABIE53_000585 0.55 -2.1
641,764 - ABIE53_000585 0.55 -2.4
641,988 + ABIE53_000585 0.68 -2.8
641,988 + ABIE53_000585 0.68 -2.8
641,989 - ABIE53_000585 0.68 -0.1
641,989 - ABIE53_000585 0.68 -0.1
642,085 - ABIE53_000585 0.73 -0.3
642,201 + ABIE53_000585 0.80 +0.0
642,201 + ABIE53_000585 0.80 -0.3
642,202 - ABIE53_000585 0.80 -1.5
642,205 + ABIE53_000585 0.80 +0.1
642,206 - ABIE53_000585 0.80 -0.5
642,285 + ABIE53_000585 0.85 +2.9
642,286 - ABIE53_000585 0.85 -0.2
642,286 - ABIE53_000585 0.85 -1.5
642,301 + ABIE53_000585 0.86 -0.2
642,301 + ABIE53_000585 0.86 -0.9
642,301 + ABIE53_000585 0.86 -0.9
642,302 - ABIE53_000585 0.86 -0.9
642,302 - ABIE53_000585 0.86 -0.4
642,302 - ABIE53_000585 0.86 -2.4
642,302 - ABIE53_000585 0.86 -1.3
642,302 - ABIE53_000585 0.86 +2.1
642,302 - ABIE53_000585 0.86 -0.4
642,302 - ABIE53_000585 0.86 +1.1
642,336 + ABIE53_000585 0.88 -1.8
642,336 + ABIE53_000585 0.88 +0.3
642,336 + ABIE53_000585 0.88 -0.2
642,337 - ABIE53_000585 0.88 -1.1
642,337 - ABIE53_000585 0.88 -0.2
642,352 - ABIE53_000585 0.89 +1.1
642,352 - ABIE53_000585 0.89 -0.3
642,361 + ABIE53_000585 0.89 +0.3
642,362 - ABIE53_000585 0.89 +1.2
642,422 - +0.1
642,459 + -0.3
642,549 + -0.9
642,574 + -1.1
642,575 - -1.3
642,580 + -1.5
642,652 + +0.3
642,653 - -1.7
642,705 + ABIE53_000586 0.11 +0.1
642,705 + ABIE53_000586 0.11 -0.9
642,705 + ABIE53_000586 0.11 +1.8
642,706 - ABIE53_000586 0.11 +0.5
642,706 - ABIE53_000586 0.11 +0.8
642,706 - ABIE53_000586 0.11 -1.9
642,876 + ABIE53_000586 0.24 -0.7
642,877 - ABIE53_000586 0.24 -0.2
642,948 + ABIE53_000586 0.29 -0.5
642,948 + ABIE53_000586 0.29 +3.7
642,948 + ABIE53_000586 0.29 -0.8
643,055 - ABIE53_000586 0.37 -0.7
643,055 - ABIE53_000586 0.37 -1.3
643,055 - ABIE53_000586 0.37 -0.8
643,055 - ABIE53_000586 0.37 -2.3
643,056 + ABIE53_000586 0.37 +1.1
643,056 + ABIE53_000586 0.37 +2.1
643,056 + ABIE53_000586 0.37 +0.7
643,056 + ABIE53_000586 0.37 -1.4
643,056 + ABIE53_000586 0.37 -0.2
643,056 + ABIE53_000586 0.37 -2.6
643,057 - ABIE53_000586 0.38 -1.7
643,057 - ABIE53_000586 0.38 -0.9
643,057 - ABIE53_000586 0.38 +0.5
643,057 - ABIE53_000586 0.38 -0.4
643,057 - ABIE53_000586 0.38 +1.7
643,057 - ABIE53_000586 0.38 -1.3
643,057 - ABIE53_000586 0.38 +0.1
643,057 - ABIE53_000586 0.38 -2.0
643,057 - ABIE53_000586 0.38 -0.0
643,101 + ABIE53_000586 0.41 -1.3
643,158 + ABIE53_000586 0.45 +0.1
643,158 + ABIE53_000586 0.45 -0.9
643,158 + ABIE53_000586 0.45 +0.1
643,158 + ABIE53_000586 0.45 +1.8
643,194 + ABIE53_000586 0.48 -0.3
643,305 + ABIE53_000586 0.56 -1.5
643,351 + ABIE53_000586 0.60 +0.1
643,352 - ABIE53_000586 0.60 -2.1
643,368 + ABIE53_000586 0.61 -1.6
643,369 - ABIE53_000586 0.61 -0.0
643,369 - ABIE53_000586 0.61 +2.1
643,369 - ABIE53_000586 0.61 -0.7
643,386 + ABIE53_000586 0.62 +0.3
643,386 + ABIE53_000586 0.62 -2.4
643,386 + ABIE53_000586 0.62 -1.6
643,386 + ABIE53_000586 0.62 -0.2
643,386 + ABIE53_000586 0.62 +2.9
643,386 + ABIE53_000586 0.62 +0.1
643,387 - ABIE53_000586 0.63 +0.1
643,387 - ABIE53_000586 0.63 -0.3
643,387 - ABIE53_000586 0.63 +3.2
643,387 - ABIE53_000586 0.63 +0.2
643,459 - ABIE53_000586 0.68 +0.2
643,459 - ABIE53_000586 0.68 -0.2
643,459 - ABIE53_000586 0.68 -0.6
643,565 - ABIE53_000586 0.76 +0.1
643,607 - ABIE53_000586 0.79 +0.1
643,635 + ABIE53_000586 0.81 -0.3
643,636 - ABIE53_000586 0.81 -0.6
643,636 - ABIE53_000586 0.81 +1.1
643,636 - ABIE53_000586 0.81 +0.1
643,636 - ABIE53_000586 0.81 +1.1
643,719 + ABIE53_000586 0.88 +0.7
643,719 + ABIE53_000586 0.88 -0.4
643,719 + ABIE53_000586 0.88 +0.8
643,719 + ABIE53_000586 0.88 +1.1
643,719 + ABIE53_000586 0.88 -0.0
643,719 + ABIE53_000586 0.88 -1.0
643,719 + ABIE53_000586 0.88 +2.4
643,719 + ABIE53_000586 0.88 +1.3
643,719 + ABIE53_000586 0.88 +1.1
643,719 + ABIE53_000586 0.88 -1.3
643,719 + ABIE53_000586 0.88 +0.2
643,720 - ABIE53_000586 0.88 -0.7
643,720 - ABIE53_000586 0.88 +0.4
643,720 - ABIE53_000586 0.88 -1.2
643,720 - ABIE53_000586 0.88 -0.8
643,949 + -0.5
643,949 + -0.5
643,949 + -1.7
643,949 + +1.7
643,949 + -0.5
643,949 + -1.5
643,949 + +1.1
643,950 - -0.5
643,950 - +0.1
643,950 - -0.8
643,993 + +0.6
643,994 - +4.3
643,994 - +0.3
644,161 + -0.9
644,162 - -2.4
644,338 + +0.6
644,338 + -0.5
644,338 + -1.3
644,339 - +0.9
644,339 - +0.6
644,339 - -0.3
644,339 - -1.3
644,358 + +1.8
644,359 - +0.9
644,359 - -0.5
644,359 - +0.5
644,474 - -0.9
644,521 + -0.9
644,521 + -1.0
644,521 + -0.8
644,521 + +1.1
644,521 + -0.5
644,522 - -0.8
644,522 - +1.1
644,522 - -1.3
644,522 - +0.7
644,522 - -0.9
644,537 + -0.8
644,538 - -0.9
644,575 + ABIE53_000587 0.14 -0.3
644,575 + ABIE53_000587 0.14 +0.1
644,575 + ABIE53_000587 0.14 +0.1
644,612 + ABIE53_000587 0.22 -1.0
644,763 - ABIE53_000587 0.56 -1.4
644,783 + ABIE53_000587 0.60 -0.9
644,783 + ABIE53_000587 0.60 +1.1
644,783 + ABIE53_000587 0.60 -0.5
644,783 + ABIE53_000587 0.60 -1.2
644,783 + ABIE53_000587 0.60 -1.9
644,783 + ABIE53_000587 0.60 -0.1
644,784 - ABIE53_000587 0.60 +1.1
644,784 - ABIE53_000587 0.60 -0.1
644,784 - ABIE53_000587 0.60 +0.8
644,784 - ABIE53_000587 0.60 -0.9
644,784 - ABIE53_000587 0.60 -1.5
644,784 - ABIE53_000587 0.60 +3.4
644,845 - ABIE53_000587 0.74 +2.1
644,846 + ABIE53_000587 0.74 -3.0
644,846 + ABIE53_000587 0.74 +0.1
644,847 - ABIE53_000587 0.74 -0.3
644,847 - ABIE53_000587 0.74 -0.2
644,847 - ABIE53_000587 0.74 +0.7
644,847 - ABIE53_000587 0.74 -0.1

Or see this region's nucleotide sequence