Experiment: Plant outgrowth control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000531 and ABIE53_000532 overlap by 10 nucleotides ABIE53_000532 and ABIE53_000533 overlap by 8 nucleotides
ABIE53_000531: ABIE53_000531 - type I restriction enzyme M protein, at 570,590 to 573,070
_000531
ABIE53_000532: ABIE53_000532 - type I restriction enzyme S subunit, at 573,061 to 574,308
_000532
ABIE53_000533: ABIE53_000533 - type I restriction enzyme R subunit, at 574,301 to 577,402
_000533
Position (kb) 573
574
575 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 572.070 kb on - strand, within ABIE53_000531 at 572.070 kb on - strand, within ABIE53_000531 at 572.070 kb on - strand, within ABIE53_000531 at 572.261 kb on - strand, within ABIE53_000531 at 572.295 kb on - strand, within ABIE53_000531 at 572.295 kb on - strand, within ABIE53_000531 at 572.304 kb on - strand, within ABIE53_000531 at 572.304 kb on - strand, within ABIE53_000531 at 572.304 kb on - strand, within ABIE53_000531 at 572.321 kb on + strand, within ABIE53_000531 at 572.321 kb on + strand, within ABIE53_000531 at 572.321 kb on + strand, within ABIE53_000531 at 572.321 kb on + strand, within ABIE53_000531 at 572.322 kb on - strand, within ABIE53_000531 at 572.351 kb on + strand, within ABIE53_000531 at 572.351 kb on + strand, within ABIE53_000531 at 572.351 kb on + strand, within ABIE53_000531 at 572.351 kb on + strand, within ABIE53_000531 at 572.351 kb on + strand, within ABIE53_000531 at 572.352 kb on - strand, within ABIE53_000531 at 572.352 kb on - strand, within ABIE53_000531 at 572.453 kb on + strand, within ABIE53_000531 at 572.453 kb on + strand, within ABIE53_000531 at 572.453 kb on + strand, within ABIE53_000531 at 572.453 kb on + strand, within ABIE53_000531 at 572.453 kb on + strand, within ABIE53_000531 at 572.453 kb on + strand, within ABIE53_000531 at 572.454 kb on - strand, within ABIE53_000531 at 572.454 kb on - strand, within ABIE53_000531 at 572.454 kb on - strand, within ABIE53_000531 at 572.455 kb on + strand, within ABIE53_000531 at 572.455 kb on + strand, within ABIE53_000531 at 572.455 kb on + strand, within ABIE53_000531 at 572.456 kb on - strand, within ABIE53_000531 at 572.456 kb on - strand, within ABIE53_000531 at 572.456 kb on - strand, within ABIE53_000531 at 572.456 kb on - strand, within ABIE53_000531 at 572.456 kb on - strand, within ABIE53_000531 at 572.456 kb on - strand, within ABIE53_000531 at 572.464 kb on + strand, within ABIE53_000531 at 572.465 kb on - strand, within ABIE53_000531 at 572.465 kb on - strand, within ABIE53_000531 at 572.517 kb on - strand, within ABIE53_000531 at 572.517 kb on - strand, within ABIE53_000531 at 572.718 kb on - strand, within ABIE53_000531 at 572.747 kb on + strand, within ABIE53_000531 at 572.747 kb on + strand, within ABIE53_000531 at 572.747 kb on + strand, within ABIE53_000531 at 572.748 kb on - strand, within ABIE53_000531 at 572.748 kb on - strand, within ABIE53_000531 at 572.748 kb on - strand, within ABIE53_000531 at 572.776 kb on + strand, within ABIE53_000531 at 572.834 kb on + strand at 572.834 kb on + strand at 572.835 kb on - strand at 572.835 kb on - strand at 572.976 kb on - strand at 573.061 kb on - strand at 573.079 kb on + strand at 573.120 kb on + strand at 573.141 kb on - strand at 573.147 kb on + strand at 573.147 kb on + strand at 573.147 kb on + strand at 573.169 kb on + strand at 573.169 kb on + strand at 573.169 kb on + strand at 573.169 kb on + strand at 573.169 kb on + strand at 573.169 kb on + strand at 573.170 kb on - strand at 573.170 kb on - strand at 573.170 kb on - strand at 573.170 kb on - strand at 573.170 kb on - strand at 573.170 kb on - strand at 573.170 kb on - strand at 573.197 kb on + strand, within ABIE53_000532 at 573.197 kb on + strand, within ABIE53_000532 at 573.321 kb on + strand, within ABIE53_000532 at 573.385 kb on + strand, within ABIE53_000532 at 573.385 kb on + strand, within ABIE53_000532 at 573.386 kb on - strand, within ABIE53_000532 at 573.388 kb on + strand, within ABIE53_000532 at 573.388 kb on + strand, within ABIE53_000532 at 573.388 kb on + strand, within ABIE53_000532 at 573.388 kb on + strand, within ABIE53_000532 at 573.388 kb on + strand, within ABIE53_000532 at 573.388 kb on + strand, within ABIE53_000532 at 573.388 kb on + strand, within ABIE53_000532 at 573.389 kb on - strand, within ABIE53_000532 at 573.389 kb on - strand, within ABIE53_000532 at 573.402 kb on + strand, within ABIE53_000532 at 573.402 kb on + strand, within ABIE53_000532 at 573.403 kb on - strand, within ABIE53_000532 at 573.438 kb on + strand, within ABIE53_000532 at 573.438 kb on + strand, within ABIE53_000532 at 573.438 kb on + strand, within ABIE53_000532 at 573.439 kb on - strand, within ABIE53_000532 at 573.439 kb on - strand, within ABIE53_000532 at 573.439 kb on - strand, within ABIE53_000532 at 573.445 kb on + strand, within ABIE53_000532 at 573.454 kb on + strand, within ABIE53_000532 at 573.525 kb on + strand, within ABIE53_000532 at 573.526 kb on - strand, within ABIE53_000532 at 573.529 kb on + strand, within ABIE53_000532 at 573.529 kb on + strand, within ABIE53_000532 at 573.529 kb on + strand, within ABIE53_000532 at 573.529 kb on + strand, within ABIE53_000532 at 573.529 kb on + strand, within ABIE53_000532 at 573.529 kb on + strand, within ABIE53_000532 at 573.530 kb on - strand, within ABIE53_000532 at 573.530 kb on - strand, within ABIE53_000532 at 573.530 kb on - strand, within ABIE53_000532 at 573.530 kb on - strand, within ABIE53_000532 at 573.530 kb on - strand, within ABIE53_000532 at 573.531 kb on + strand, within ABIE53_000532 at 573.531 kb on + strand, within ABIE53_000532 at 573.609 kb on + strand, within ABIE53_000532 at 573.765 kb on + strand, within ABIE53_000532 at 573.790 kb on - strand, within ABIE53_000532 at 573.848 kb on + strand, within ABIE53_000532 at 573.848 kb on + strand, within ABIE53_000532 at 573.848 kb on + strand, within ABIE53_000532 at 573.849 kb on - strand, within ABIE53_000532 at 573.849 kb on - strand, within ABIE53_000532 at 573.858 kb on + strand, within ABIE53_000532 at 573.859 kb on - strand, within ABIE53_000532 at 573.887 kb on - strand, within ABIE53_000532 at 573.894 kb on + strand, within ABIE53_000532 at 573.894 kb on + strand, within ABIE53_000532 at 573.895 kb on - strand, within ABIE53_000532 at 573.895 kb on - strand, within ABIE53_000532 at 573.895 kb on - strand, within ABIE53_000532 at 573.895 kb on - strand, within ABIE53_000532 at 573.895 kb on - strand, within ABIE53_000532 at 573.895 kb on - strand, within ABIE53_000532 at 573.895 kb on - strand, within ABIE53_000532 at 573.932 kb on - strand, within ABIE53_000532 at 573.936 kb on + strand, within ABIE53_000532 at 573.936 kb on + strand, within ABIE53_000532 at 573.936 kb on + strand, within ABIE53_000532 at 573.943 kb on + strand, within ABIE53_000532 at 573.943 kb on + strand, within ABIE53_000532 at 573.944 kb on - strand, within ABIE53_000532 at 573.944 kb on - strand, within ABIE53_000532 at 574.025 kb on - strand, within ABIE53_000532 at 574.079 kb on - strand, within ABIE53_000532 at 574.089 kb on + strand, within ABIE53_000532 at 574.089 kb on + strand, within ABIE53_000532 at 574.090 kb on - strand, within ABIE53_000532 at 574.090 kb on - strand, within ABIE53_000532 at 574.127 kb on + strand, within ABIE53_000532 at 574.127 kb on + strand, within ABIE53_000532 at 574.206 kb on - strand at 574.226 kb on + strand at 574.227 kb on - strand at 574.260 kb on - strand at 574.260 kb on - strand at 574.260 kb on - strand at 574.262 kb on + strand at 574.350 kb on + strand at 574.350 kb on + strand at 574.351 kb on - strand at 574.351 kb on - strand at 574.357 kb on + strand at 574.358 kb on - strand at 574.363 kb on + strand at 574.363 kb on + strand at 574.363 kb on + strand at 574.363 kb on + strand at 574.363 kb on + strand at 574.363 kb on + strand at 574.363 kb on + strand at 574.363 kb on + strand at 574.363 kb on + strand at 574.363 kb on + strand at 574.363 kb on + strand at 574.364 kb on - strand at 574.364 kb on - strand at 574.364 kb on - strand at 574.364 kb on - strand at 574.364 kb on - strand at 574.366 kb on - strand at 574.388 kb on + strand at 574.389 kb on - strand at 574.389 kb on - strand at 574.432 kb on + strand at 574.433 kb on - strand at 574.433 kb on - strand at 574.475 kb on + strand at 574.547 kb on + strand at 574.547 kb on + strand at 574.547 kb on + strand at 574.547 kb on + strand at 574.547 kb on + strand at 574.548 kb on - strand at 574.548 kb on - strand at 574.548 kb on - strand at 574.568 kb on + strand at 574.569 kb on - strand at 574.569 kb on - strand at 574.569 kb on - strand at 574.569 kb on - strand at 574.569 kb on - strand at 574.703 kb on + strand, within ABIE53_000533 at 574.703 kb on + strand, within ABIE53_000533 at 574.730 kb on + strand, within ABIE53_000533 at 574.730 kb on + strand, within ABIE53_000533 at 574.730 kb on + strand, within ABIE53_000533 at 574.730 kb on + strand, within ABIE53_000533 at 574.730 kb on + strand, within ABIE53_000533 at 574.730 kb on + strand, within ABIE53_000533 at 574.730 kb on + strand, within ABIE53_000533 at 574.731 kb on - strand, within ABIE53_000533 at 574.731 kb on - strand, within ABIE53_000533 at 574.731 kb on - strand, within ABIE53_000533 at 574.731 kb on - strand, within ABIE53_000533 at 574.731 kb on - strand, within ABIE53_000533 at 574.731 kb on - strand, within ABIE53_000533 at 574.731 kb on - strand, within ABIE53_000533 at 574.731 kb on - strand, within ABIE53_000533 at 574.951 kb on + strand, within ABIE53_000533 at 574.952 kb on - strand, within ABIE53_000533 at 574.952 kb on - strand, within ABIE53_000533 at 574.952 kb on - strand, within ABIE53_000533 at 575.000 kb on - strand, within ABIE53_000533 at 575.102 kb on + strand, within ABIE53_000533 at 575.102 kb on + strand, within ABIE53_000533 at 575.102 kb on + strand, within ABIE53_000533 at 575.102 kb on + strand, within ABIE53_000533 at 575.164 kb on + strand, within ABIE53_000533 at 575.164 kb on + strand, within ABIE53_000533
Per-strain Table
Position Strand Gene LocusTag Fraction Plant outgrowth control remove 572,070 - ABIE53_000531 0.60 -1.4 572,070 - ABIE53_000531 0.60 +0.9 572,070 - ABIE53_000531 0.60 +0.3 572,261 - ABIE53_000531 0.67 -0.9 572,295 - ABIE53_000531 0.69 -0.9 572,295 - ABIE53_000531 0.69 -1.7 572,304 - ABIE53_000531 0.69 -0.4 572,304 - ABIE53_000531 0.69 -0.7 572,304 - ABIE53_000531 0.69 +0.1 572,321 + ABIE53_000531 0.70 -1.7 572,321 + ABIE53_000531 0.70 +0.1 572,321 + ABIE53_000531 0.70 -0.5 572,321 + ABIE53_000531 0.70 -1.7 572,322 - ABIE53_000531 0.70 -1.6 572,351 + ABIE53_000531 0.71 -2.2 572,351 + ABIE53_000531 0.71 -0.2 572,351 + ABIE53_000531 0.71 +3.1 572,351 + ABIE53_000531 0.71 +0.1 572,351 + ABIE53_000531 0.71 -2.3 572,352 - ABIE53_000531 0.71 -1.0 572,352 - ABIE53_000531 0.71 +0.1 572,453 + ABIE53_000531 0.75 -0.9 572,453 + ABIE53_000531 0.75 -0.6 572,453 + ABIE53_000531 0.75 -1.5 572,453 + ABIE53_000531 0.75 +0.8 572,453 + ABIE53_000531 0.75 -1.5 572,453 + ABIE53_000531 0.75 -1.3 572,454 - ABIE53_000531 0.75 -2.3 572,454 - ABIE53_000531 0.75 +1.1 572,454 - ABIE53_000531 0.75 -1.1 572,455 + ABIE53_000531 0.75 -1.3 572,455 + ABIE53_000531 0.75 -0.1 572,455 + ABIE53_000531 0.75 -0.0 572,456 - ABIE53_000531 0.75 -0.9 572,456 - ABIE53_000531 0.75 -0.6 572,456 - ABIE53_000531 0.75 -0.7 572,456 - ABIE53_000531 0.75 -2.2 572,456 - ABIE53_000531 0.75 +1.1 572,456 - ABIE53_000531 0.75 -1.7 572,464 + ABIE53_000531 0.76 +1.7 572,465 - ABIE53_000531 0.76 -0.7 572,465 - ABIE53_000531 0.76 -2.9 572,517 - ABIE53_000531 0.78 +0.8 572,517 - ABIE53_000531 0.78 -1.2 572,718 - ABIE53_000531 0.86 -0.4 572,747 + ABIE53_000531 0.87 -2.5 572,747 + ABIE53_000531 0.87 -0.4 572,747 + ABIE53_000531 0.87 -1.6 572,748 - ABIE53_000531 0.87 +2.7 572,748 - ABIE53_000531 0.87 +1.4 572,748 - ABIE53_000531 0.87 -2.3 572,776 + ABIE53_000531 0.88 -0.3 572,834 + -1.9 572,834 + -2.6 572,835 - +0.8 572,835 - -0.9 572,976 - -1.3 573,061 - +1.1 573,079 + -0.6 573,120 + +0.6 573,141 - -1.9 573,147 + -0.1 573,147 + +1.1 573,147 + -0.2 573,169 + -0.6 573,169 + -0.9 573,169 + -1.4 573,169 + -1.6 573,169 + -0.5 573,169 + -0.7 573,170 - +0.8 573,170 - -2.1 573,170 - -1.5 573,170 - +0.1 573,170 - +0.6 573,170 - -0.8 573,170 - -1.2 573,197 + ABIE53_000532 0.11 -0.6 573,197 + ABIE53_000532 0.11 +2.1 573,321 + ABIE53_000532 0.21 -0.9 573,385 + ABIE53_000532 0.26 -1.5 573,385 + ABIE53_000532 0.26 -0.7 573,386 - ABIE53_000532 0.26 -1.0 573,388 + ABIE53_000532 0.26 +0.5 573,388 + ABIE53_000532 0.26 +0.1 573,388 + ABIE53_000532 0.26 +0.5 573,388 + ABIE53_000532 0.26 +0.0 573,388 + ABIE53_000532 0.26 -0.9 573,388 + ABIE53_000532 0.26 +0.1 573,388 + ABIE53_000532 0.26 -0.5 573,389 - ABIE53_000532 0.26 +0.3 573,389 - ABIE53_000532 0.26 -3.3 573,402 + ABIE53_000532 0.27 -0.9 573,402 + ABIE53_000532 0.27 -1.2 573,403 - ABIE53_000532 0.27 +2.1 573,438 + ABIE53_000532 0.30 -0.6 573,438 + ABIE53_000532 0.30 -1.7 573,438 + ABIE53_000532 0.30 -1.2 573,439 - ABIE53_000532 0.30 -0.5 573,439 - ABIE53_000532 0.30 +0.1 573,439 - ABIE53_000532 0.30 +0.4 573,445 + ABIE53_000532 0.31 +0.4 573,454 + ABIE53_000532 0.31 -1.8 573,525 + ABIE53_000532 0.37 -2.9 573,526 - ABIE53_000532 0.37 +1.1 573,529 + ABIE53_000532 0.38 -0.2 573,529 + ABIE53_000532 0.38 -1.0 573,529 + ABIE53_000532 0.38 -2.2 573,529 + ABIE53_000532 0.38 -2.3 573,529 + ABIE53_000532 0.38 -1.8 573,529 + ABIE53_000532 0.38 -0.8 573,530 - ABIE53_000532 0.38 -0.5 573,530 - ABIE53_000532 0.38 -3.2 573,530 - ABIE53_000532 0.38 -1.5 573,530 - ABIE53_000532 0.38 -1.7 573,530 - ABIE53_000532 0.38 -0.9 573,531 + ABIE53_000532 0.38 +2.9 573,531 + ABIE53_000532 0.38 +1.3 573,609 + ABIE53_000532 0.44 -0.5 573,765 + ABIE53_000532 0.56 +0.3 573,790 - ABIE53_000532 0.58 -0.9 573,848 + ABIE53_000532 0.63 +0.1 573,848 + ABIE53_000532 0.63 +0.3 573,848 + ABIE53_000532 0.63 -0.5 573,849 - ABIE53_000532 0.63 +0.1 573,849 - ABIE53_000532 0.63 +1.7 573,858 + ABIE53_000532 0.64 -2.7 573,859 - ABIE53_000532 0.64 +1.9 573,887 - ABIE53_000532 0.66 -0.6 573,894 + ABIE53_000532 0.67 -1.6 573,894 + ABIE53_000532 0.67 +0.4 573,895 - ABIE53_000532 0.67 +0.1 573,895 - ABIE53_000532 0.67 +2.1 573,895 - ABIE53_000532 0.67 -0.5 573,895 - ABIE53_000532 0.67 -1.1 573,895 - ABIE53_000532 0.67 -0.9 573,895 - ABIE53_000532 0.67 -1.7 573,895 - ABIE53_000532 0.67 -2.3 573,932 - ABIE53_000532 0.70 +1.1 573,936 + ABIE53_000532 0.70 -1.4 573,936 + ABIE53_000532 0.70 +1.7 573,936 + ABIE53_000532 0.70 -1.2 573,943 + ABIE53_000532 0.71 -1.7 573,943 + ABIE53_000532 0.71 -1.4 573,944 - ABIE53_000532 0.71 +0.1 573,944 - ABIE53_000532 0.71 -2.4 574,025 - ABIE53_000532 0.77 -0.5 574,079 - ABIE53_000532 0.82 -1.5 574,089 + ABIE53_000532 0.82 -1.5 574,089 + ABIE53_000532 0.82 +0.3 574,090 - ABIE53_000532 0.82 -1.2 574,090 - ABIE53_000532 0.82 -2.2 574,127 + ABIE53_000532 0.85 -2.5 574,127 + ABIE53_000532 0.85 +0.7 574,206 - -2.1 574,226 + -2.2 574,227 - -2.5 574,260 - -1.8 574,260 - -1.2 574,260 - +2.5 574,262 + -0.5 574,350 + +0.4 574,350 + +0.4 574,351 - -1.7 574,351 - -1.1 574,357 + -0.9 574,358 - -2.3 574,363 + -2.2 574,363 + -1.2 574,363 + +0.6 574,363 + +0.3 574,363 + -0.8 574,363 + -2.5 574,363 + -1.5 574,363 + -0.7 574,363 + -0.9 574,363 + -1.2 574,363 + -2.0 574,364 - -1.9 574,364 - -0.9 574,364 - -2.1 574,364 - -2.2 574,364 - -1.5 574,366 - -0.5 574,388 + -1.9 574,389 - +0.3 574,389 - -1.0 574,432 + -2.4 574,433 - +1.1 574,433 - +0.7 574,475 + -1.5 574,547 + +0.3 574,547 + +0.4 574,547 + +0.4 574,547 + +0.1 574,547 + +0.8 574,548 - +0.1 574,548 - +1.1 574,548 - -1.9 574,568 + -2.0 574,569 - +1.3 574,569 - -1.9 574,569 - -2.1 574,569 - +0.1 574,569 - +0.1 574,703 + ABIE53_000533 0.13 -0.8 574,703 + ABIE53_000533 0.13 +0.4 574,730 + ABIE53_000533 0.14 -1.0 574,730 + ABIE53_000533 0.14 +0.4 574,730 + ABIE53_000533 0.14 +0.7 574,730 + ABIE53_000533 0.14 +1.1 574,730 + ABIE53_000533 0.14 -0.5 574,730 + ABIE53_000533 0.14 -0.5 574,730 + ABIE53_000533 0.14 -0.9 574,731 - ABIE53_000533 0.14 -0.1 574,731 - ABIE53_000533 0.14 +0.7 574,731 - ABIE53_000533 0.14 -2.1 574,731 - ABIE53_000533 0.14 +0.1 574,731 - ABIE53_000533 0.14 +0.8 574,731 - ABIE53_000533 0.14 -3.1 574,731 - ABIE53_000533 0.14 -1.1 574,731 - ABIE53_000533 0.14 -0.2 574,951 + ABIE53_000533 0.21 -1.5 574,952 - ABIE53_000533 0.21 -1.7 574,952 - ABIE53_000533 0.21 +0.7 574,952 - ABIE53_000533 0.21 -0.9 575,000 - ABIE53_000533 0.23 -0.6 575,102 + ABIE53_000533 0.26 -0.2 575,102 + ABIE53_000533 0.26 +0.2 575,102 + ABIE53_000533 0.26 -0.3 575,102 + ABIE53_000533 0.26 -0.5 575,164 + ABIE53_000533 0.28 +0.3 575,164 + ABIE53_000533 0.28 -0.5
Or see this region's nucleotide sequence