Experiment: Plant outgrowth control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000370 and ABIE53_000371 are separated by 150 nucleotides ABIE53_000371 and ABIE53_000372 are separated by 48 nucleotides ABIE53_000372 and ABIE53_000373 are separated by 90 nucleotides
ABIE53_000370: ABIE53_000370 - lysine/arginine/ornithine transport system substrate-binding protein, at 399,007 to 399,801
_000370
ABIE53_000371: ABIE53_000371 - AraC-like DNA-binding protein, at 399,952 to 400,797
_000371
ABIE53_000372: ABIE53_000372 - threonine/homoserine/homoserine lactone efflux protein, at 400,846 to 401,433
_000372
ABIE53_000373: ABIE53_000373 - sulfur dioxygenase, at 401,524 to 402,597
_000373
Position (kb) 399
400
401 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 398.952 kb on + strand at 398.952 kb on + strand at 398.952 kb on + strand at 398.953 kb on - strand at 398.962 kb on + strand at 398.962 kb on + strand at 398.962 kb on + strand at 398.963 kb on - strand at 398.963 kb on - strand at 398.963 kb on - strand at 398.965 kb on + strand at 398.966 kb on - strand at 398.966 kb on - strand at 398.974 kb on + strand at 398.974 kb on + strand at 398.974 kb on + strand at 398.974 kb on + strand at 398.975 kb on - strand at 398.977 kb on + strand at 398.977 kb on + strand at 399.500 kb on - strand, within ABIE53_000370 at 399.520 kb on + strand, within ABIE53_000370 at 399.520 kb on + strand, within ABIE53_000370 at 399.521 kb on - strand, within ABIE53_000370 at 399.521 kb on - strand, within ABIE53_000370 at 399.521 kb on - strand, within ABIE53_000370 at 399.521 kb on - strand, within ABIE53_000370 at 399.613 kb on + strand, within ABIE53_000370 at 399.613 kb on + strand, within ABIE53_000370 at 399.614 kb on - strand, within ABIE53_000370 at 399.670 kb on + strand, within ABIE53_000370 at 399.671 kb on - strand, within ABIE53_000370 at 399.769 kb on + strand at 399.769 kb on + strand at 399.769 kb on + strand at 399.770 kb on - strand at 399.770 kb on - strand at 399.780 kb on + strand at 399.781 kb on - strand at 399.800 kb on - strand at 399.800 kb on - strand at 399.800 kb on - strand at 399.800 kb on - strand at 399.836 kb on + strand at 399.836 kb on + strand at 399.837 kb on - strand at 399.837 kb on - strand at 399.837 kb on - strand at 399.837 kb on - strand at 399.873 kb on + strand at 399.873 kb on + strand at 399.873 kb on + strand at 399.873 kb on + strand at 399.873 kb on + strand at 399.874 kb on - strand at 399.874 kb on - strand at 399.874 kb on - strand at 399.874 kb on - strand at 399.874 kb on - strand at 399.931 kb on + strand at 399.931 kb on + strand at 399.931 kb on + strand at 399.932 kb on - strand at 400.072 kb on + strand, within ABIE53_000371 at 400.132 kb on + strand, within ABIE53_000371 at 400.132 kb on + strand, within ABIE53_000371 at 400.132 kb on + strand, within ABIE53_000371 at 400.132 kb on + strand, within ABIE53_000371 at 400.132 kb on + strand, within ABIE53_000371 at 400.133 kb on - strand, within ABIE53_000371 at 400.133 kb on - strand, within ABIE53_000371 at 400.133 kb on - strand, within ABIE53_000371 at 400.133 kb on - strand, within ABIE53_000371 at 400.133 kb on - strand, within ABIE53_000371 at 400.133 kb on - strand, within ABIE53_000371 at 400.133 kb on - strand, within ABIE53_000371 at 400.306 kb on + strand, within ABIE53_000371 at 400.307 kb on - strand, within ABIE53_000371 at 400.307 kb on - strand, within ABIE53_000371 at 400.307 kb on - strand, within ABIE53_000371 at 400.307 kb on - strand, within ABIE53_000371 at 400.562 kb on + strand, within ABIE53_000371 at 400.562 kb on + strand, within ABIE53_000371 at 400.562 kb on + strand, within ABIE53_000371 at 400.562 kb on + strand, within ABIE53_000371 at 400.562 kb on + strand, within ABIE53_000371 at 400.562 kb on + strand, within ABIE53_000371 at 400.562 kb on + strand, within ABIE53_000371 at 400.562 kb on + strand, within ABIE53_000371 at 400.562 kb on + strand, within ABIE53_000371 at 400.562 kb on + strand, within ABIE53_000371 at 400.562 kb on + strand, within ABIE53_000371 at 400.562 kb on + strand, within ABIE53_000371 at 400.562 kb on + strand, within ABIE53_000371 at 400.562 kb on + strand, within ABIE53_000371 at 400.562 kb on + strand, within ABIE53_000371 at 400.562 kb on + strand, within ABIE53_000371 at 400.562 kb on + strand, within ABIE53_000371 at 400.562 kb on + strand, within ABIE53_000371 at 400.562 kb on + strand, within ABIE53_000371 at 400.563 kb on - strand, within ABIE53_000371 at 400.563 kb on - strand, within ABIE53_000371 at 400.563 kb on - strand, within ABIE53_000371 at 400.563 kb on - strand, within ABIE53_000371 at 400.563 kb on - strand, within ABIE53_000371 at 400.563 kb on - strand, within ABIE53_000371 at 400.563 kb on - strand, within ABIE53_000371 at 400.563 kb on - strand, within ABIE53_000371 at 400.563 kb on - strand, within ABIE53_000371 at 400.563 kb on - strand, within ABIE53_000371 at 400.563 kb on - strand, within ABIE53_000371 at 400.563 kb on - strand, within ABIE53_000371 at 400.563 kb on - strand, within ABIE53_000371 at 400.563 kb on - strand, within ABIE53_000371 at 400.563 kb on - strand, within ABIE53_000371 at 400.563 kb on - strand, within ABIE53_000371 at 400.639 kb on + strand, within ABIE53_000371 at 400.639 kb on + strand, within ABIE53_000371 at 400.639 kb on + strand, within ABIE53_000371 at 400.639 kb on + strand, within ABIE53_000371 at 400.639 kb on + strand, within ABIE53_000371 at 400.639 kb on + strand, within ABIE53_000371 at 400.640 kb on - strand, within ABIE53_000371 at 400.663 kb on + strand, within ABIE53_000371 at 400.664 kb on - strand, within ABIE53_000371 at 400.664 kb on - strand, within ABIE53_000371 at 400.862 kb on + strand at 400.862 kb on + strand at 400.862 kb on + strand at 400.863 kb on - strand at 400.863 kb on - strand at 400.863 kb on - strand at 400.863 kb on - strand at 400.863 kb on - strand at 400.863 kb on - strand at 400.863 kb on - strand at 400.934 kb on + strand, within ABIE53_000372 at 400.935 kb on - strand, within ABIE53_000372 at 400.935 kb on - strand, within ABIE53_000372 at 400.935 kb on - strand, within ABIE53_000372 at 400.958 kb on + strand, within ABIE53_000372 at 400.958 kb on + strand, within ABIE53_000372 at 400.982 kb on + strand, within ABIE53_000372 at 400.982 kb on + strand, within ABIE53_000372 at 400.982 kb on + strand, within ABIE53_000372 at 400.982 kb on + strand, within ABIE53_000372 at 400.982 kb on + strand, within ABIE53_000372 at 400.982 kb on + strand, within ABIE53_000372 at 400.982 kb on + strand, within ABIE53_000372 at 400.982 kb on + strand, within ABIE53_000372 at 400.982 kb on + strand, within ABIE53_000372 at 400.982 kb on + strand, within ABIE53_000372 at 400.982 kb on + strand, within ABIE53_000372 at 400.982 kb on + strand, within ABIE53_000372 at 400.983 kb on - strand, within ABIE53_000372 at 400.983 kb on - strand, within ABIE53_000372 at 400.983 kb on - strand, within ABIE53_000372 at 400.983 kb on - strand, within ABIE53_000372 at 400.983 kb on - strand, within ABIE53_000372 at 400.997 kb on + strand, within ABIE53_000372 at 400.998 kb on - strand, within ABIE53_000372 at 401.045 kb on + strand, within ABIE53_000372 at 401.045 kb on + strand, within ABIE53_000372 at 401.046 kb on - strand, within ABIE53_000372 at 401.046 kb on - strand, within ABIE53_000372 at 401.112 kb on - strand, within ABIE53_000372 at 401.178 kb on - strand, within ABIE53_000372 at 401.178 kb on - strand, within ABIE53_000372 at 401.178 kb on - strand, within ABIE53_000372 at 401.289 kb on + strand, within ABIE53_000372 at 401.446 kb on - strand at 401.500 kb on + strand at 401.500 kb on + strand at 401.501 kb on - strand at 401.501 kb on - strand at 401.516 kb on + strand at 401.516 kb on + strand at 401.516 kb on + strand at 401.516 kb on + strand at 401.516 kb on + strand at 401.517 kb on - strand at 401.517 kb on - strand at 401.517 kb on - strand at 401.517 kb on - strand at 401.518 kb on + strand at 401.518 kb on + strand at 401.518 kb on + strand at 401.519 kb on - strand at 401.519 kb on - strand at 401.519 kb on - strand at 401.519 kb on - strand at 401.519 kb on - strand at 401.525 kb on + strand at 401.526 kb on - strand at 401.526 kb on - strand at 401.526 kb on - strand at 401.526 kb on - strand at 401.526 kb on - strand at 401.788 kb on + strand, within ABIE53_000373 at 401.788 kb on + strand, within ABIE53_000373 at 401.788 kb on + strand, within ABIE53_000373 at 401.788 kb on + strand, within ABIE53_000373 at 401.789 kb on - strand, within ABIE53_000373
Per-strain Table
Position Strand Gene LocusTag Fraction Plant outgrowth control remove 398,952 + +1.1 398,952 + -0.7 398,952 + +3.9 398,953 - -0.4 398,962 + -0.9 398,962 + -0.5 398,962 + -2.5 398,963 - -2.8 398,963 - -0.5 398,963 - -2.0 398,965 + -0.2 398,966 - -1.6 398,966 - -0.1 398,974 + +1.1 398,974 + +0.4 398,974 + +1.9 398,974 + +1.1 398,975 - +0.8 398,977 + -2.0 398,977 + -2.1 399,500 - ABIE53_000370 0.62 +0.1 399,520 + ABIE53_000370 0.65 -0.3 399,520 + ABIE53_000370 0.65 -1.2 399,521 - ABIE53_000370 0.65 -2.2 399,521 - ABIE53_000370 0.65 -0.5 399,521 - ABIE53_000370 0.65 -1.4 399,521 - ABIE53_000370 0.65 -1.9 399,613 + ABIE53_000370 0.76 +0.0 399,613 + ABIE53_000370 0.76 -0.5 399,614 - ABIE53_000370 0.76 -1.2 399,670 + ABIE53_000370 0.83 -0.5 399,671 - ABIE53_000370 0.84 -0.8 399,769 + -0.2 399,769 + -1.4 399,769 + -1.5 399,770 - +0.1 399,770 - -1.2 399,780 + +2.1 399,781 - -1.2 399,800 - +0.1 399,800 - -2.1 399,800 - -1.4 399,800 - +1.1 399,836 + -0.3 399,836 + +1.5 399,837 - -1.4 399,837 - +0.9 399,837 - +0.4 399,837 - -2.5 399,873 + +0.4 399,873 + -0.7 399,873 + +0.3 399,873 + +2.7 399,873 + +2.7 399,874 - -0.9 399,874 - -0.5 399,874 - -2.1 399,874 - +1.1 399,874 - +0.8 399,931 + +0.5 399,931 + -0.9 399,931 + -0.1 399,932 - +1.3 400,072 + ABIE53_000371 0.14 +0.0 400,132 + ABIE53_000371 0.21 +1.1 400,132 + ABIE53_000371 0.21 -0.9 400,132 + ABIE53_000371 0.21 -0.3 400,132 + ABIE53_000371 0.21 +0.6 400,132 + ABIE53_000371 0.21 -2.7 400,133 - ABIE53_000371 0.21 -0.2 400,133 - ABIE53_000371 0.21 -1.3 400,133 - ABIE53_000371 0.21 -0.2 400,133 - ABIE53_000371 0.21 -0.9 400,133 - ABIE53_000371 0.21 -1.1 400,133 - ABIE53_000371 0.21 -2.6 400,133 - ABIE53_000371 0.21 -0.5 400,306 + ABIE53_000371 0.42 +0.1 400,307 - ABIE53_000371 0.42 -0.5 400,307 - ABIE53_000371 0.42 -1.7 400,307 - ABIE53_000371 0.42 +0.8 400,307 - ABIE53_000371 0.42 -0.2 400,562 + ABIE53_000371 0.72 +1.4 400,562 + ABIE53_000371 0.72 -1.2 400,562 + ABIE53_000371 0.72 -2.1 400,562 + ABIE53_000371 0.72 -0.6 400,562 + ABIE53_000371 0.72 +0.1 400,562 + ABIE53_000371 0.72 -0.5 400,562 + ABIE53_000371 0.72 +1.4 400,562 + ABIE53_000371 0.72 -2.3 400,562 + ABIE53_000371 0.72 -0.5 400,562 + ABIE53_000371 0.72 +0.8 400,562 + ABIE53_000371 0.72 -0.4 400,562 + ABIE53_000371 0.72 -0.4 400,562 + ABIE53_000371 0.72 -0.5 400,562 + ABIE53_000371 0.72 -0.5 400,562 + ABIE53_000371 0.72 +0.1 400,562 + ABIE53_000371 0.72 +0.1 400,562 + ABIE53_000371 0.72 -1.3 400,562 + ABIE53_000371 0.72 -1.9 400,562 + ABIE53_000371 0.72 -2.2 400,563 - ABIE53_000371 0.72 +1.1 400,563 - ABIE53_000371 0.72 +1.7 400,563 - ABIE53_000371 0.72 -0.5 400,563 - ABIE53_000371 0.72 -1.1 400,563 - ABIE53_000371 0.72 -0.2 400,563 - ABIE53_000371 0.72 +0.1 400,563 - ABIE53_000371 0.72 -1.2 400,563 - ABIE53_000371 0.72 -0.8 400,563 - ABIE53_000371 0.72 +0.1 400,563 - ABIE53_000371 0.72 +0.9 400,563 - ABIE53_000371 0.72 +2.1 400,563 - ABIE53_000371 0.72 -1.5 400,563 - ABIE53_000371 0.72 -1.1 400,563 - ABIE53_000371 0.72 +0.7 400,563 - ABIE53_000371 0.72 -1.8 400,563 - ABIE53_000371 0.72 -0.5 400,639 + ABIE53_000371 0.81 +0.8 400,639 + ABIE53_000371 0.81 +0.1 400,639 + ABIE53_000371 0.81 -0.9 400,639 + ABIE53_000371 0.81 -0.9 400,639 + ABIE53_000371 0.81 -0.3 400,639 + ABIE53_000371 0.81 +1.0 400,640 - ABIE53_000371 0.81 -1.7 400,663 + ABIE53_000371 0.84 -0.5 400,664 - ABIE53_000371 0.84 -2.5 400,664 - ABIE53_000371 0.84 -0.5 400,862 + +0.1 400,862 + +0.1 400,862 + -0.2 400,863 - +0.9 400,863 - -0.5 400,863 - -2.8 400,863 - -0.5 400,863 - +1.1 400,863 - +0.6 400,863 - +1.1 400,934 + ABIE53_000372 0.15 +0.3 400,935 - ABIE53_000372 0.15 -1.5 400,935 - ABIE53_000372 0.15 +2.1 400,935 - ABIE53_000372 0.15 +1.4 400,958 + ABIE53_000372 0.19 +0.9 400,958 + ABIE53_000372 0.19 -1.4 400,982 + ABIE53_000372 0.23 +0.3 400,982 + ABIE53_000372 0.23 -2.9 400,982 + ABIE53_000372 0.23 -0.9 400,982 + ABIE53_000372 0.23 -3.0 400,982 + ABIE53_000372 0.23 +1.1 400,982 + ABIE53_000372 0.23 -1.6 400,982 + ABIE53_000372 0.23 -0.3 400,982 + ABIE53_000372 0.23 -0.4 400,982 + ABIE53_000372 0.23 +1.6 400,982 + ABIE53_000372 0.23 -0.2 400,982 + ABIE53_000372 0.23 +1.7 400,982 + ABIE53_000372 0.23 -0.5 400,983 - ABIE53_000372 0.23 -2.0 400,983 - ABIE53_000372 0.23 -0.6 400,983 - ABIE53_000372 0.23 -1.8 400,983 - ABIE53_000372 0.23 -2.2 400,983 - ABIE53_000372 0.23 +0.8 400,997 + ABIE53_000372 0.26 +0.4 400,998 - ABIE53_000372 0.26 -0.3 401,045 + ABIE53_000372 0.34 +0.1 401,045 + ABIE53_000372 0.34 +1.1 401,046 - ABIE53_000372 0.34 -1.5 401,046 - ABIE53_000372 0.34 -0.5 401,112 - ABIE53_000372 0.45 -1.2 401,178 - ABIE53_000372 0.56 +0.1 401,178 - ABIE53_000372 0.56 +0.9 401,178 - ABIE53_000372 0.56 -2.8 401,289 + ABIE53_000372 0.75 +0.2 401,446 - +1.1 401,500 + -0.3 401,500 + -0.3 401,501 - +1.1 401,501 - +0.5 401,516 + +0.1 401,516 + -1.5 401,516 + +0.4 401,516 + -1.1 401,516 + -0.7 401,517 - -0.3 401,517 - -1.9 401,517 - -0.9 401,517 - +1.1 401,518 + -0.6 401,518 + +0.5 401,518 + +0.8 401,519 - +0.7 401,519 - -2.3 401,519 - -0.0 401,519 - -1.7 401,519 - +0.4 401,525 + -1.5 401,526 - -1.9 401,526 - -0.1 401,526 - -1.5 401,526 - -2.6 401,526 - -0.9 401,788 + ABIE53_000373 0.25 -1.0 401,788 + ABIE53_000373 0.25 -0.4 401,788 + ABIE53_000373 0.25 -0.5 401,788 + ABIE53_000373 0.25 -0.9 401,789 - ABIE53_000373 0.25 +1.1
Or see this region's nucleotide sequence