Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0640

Experiment: L-Citrulline (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_0638 and Dshi_0639 overlap by 4 nucleotidesDshi_0639 and Dshi_0640 are separated by 101 nucleotidesDshi_0640 and Dshi_0641 are separated by 4 nucleotidesDshi_0641 and Dshi_0642 are separated by 2 nucleotides Dshi_0638: Dshi_0638 - ABC transporter related (RefSeq), at 637,586 to 638,542 _0638 Dshi_0639: Dshi_0639 - ABC-2 type transporter (RefSeq), at 638,539 to 639,300 _0639 Dshi_0640: Dshi_0640 - peptidase S49 (RefSeq), at 639,402 to 640,199 _0640 Dshi_0641: Dshi_0641 - hypothetical protein (RefSeq), at 640,204 to 640,374 _0641 Dshi_0642: Dshi_0642 - Na+/Ca+ antiporter, CaCA family (RefSeq), at 640,377 to 641,315 _0642 Position (kb) 639 640 641Strain fitness (log2 ratio) -2 -1 0 1 2 3at 638.409 kb on - strand, within Dshi_0638at 638.486 kb on - strandat 638.605 kb on - strandat 638.676 kb on + strand, within Dshi_0639at 638.722 kb on + strand, within Dshi_0639at 638.730 kb on - strand, within Dshi_0639at 638.755 kb on - strand, within Dshi_0639at 638.814 kb on + strand, within Dshi_0639at 638.833 kb on + strand, within Dshi_0639at 638.841 kb on - strand, within Dshi_0639at 638.919 kb on - strand, within Dshi_0639at 638.947 kb on + strand, within Dshi_0639at 638.963 kb on + strand, within Dshi_0639at 638.968 kb on + strand, within Dshi_0639at 638.968 kb on + strand, within Dshi_0639at 638.968 kb on + strand, within Dshi_0639at 639.098 kb on - strand, within Dshi_0639at 639.128 kb on + strand, within Dshi_0639at 639.136 kb on + strand, within Dshi_0639at 639.144 kb on - strand, within Dshi_0639at 639.208 kb on + strand, within Dshi_0639at 639.233 kb on + strandat 639.256 kb on - strandat 639.302 kb on - strandat 639.309 kb on + strandat 639.838 kb on + strand, within Dshi_0640at 639.887 kb on + strand, within Dshi_0640at 639.895 kb on - strand, within Dshi_0640at 639.895 kb on - strand, within Dshi_0640at 639.895 kb on - strand, within Dshi_0640at 639.974 kb on + strand, within Dshi_0640at 639.974 kb on + strand, within Dshi_0640at 639.974 kb on + strand, within Dshi_0640at 639.982 kb on - strand, within Dshi_0640at 639.982 kb on - strand, within Dshi_0640at 639.989 kb on + strand, within Dshi_0640at 639.997 kb on - strand, within Dshi_0640at 639.999 kb on + strand, within Dshi_0640at 640.009 kb on + strand, within Dshi_0640at 640.093 kb on + strand, within Dshi_0640at 640.185 kb on + strandat 640.275 kb on + strand, within Dshi_0641at 640.377 kb on - strandat 640.524 kb on - strand, within Dshi_0642at 641.098 kb on + strand, within Dshi_0642

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (N)
remove
638,409 - Dshi_0638 0.86 -0.1
638,486 - -0.0
638,605 - -0.1
638,676 + Dshi_0639 0.18 +0.7
638,722 + Dshi_0639 0.24 +0.4
638,730 - Dshi_0639 0.25 -0.3
638,755 - Dshi_0639 0.28 -0.8
638,814 + Dshi_0639 0.36 +0.2
638,833 + Dshi_0639 0.39 -0.5
638,841 - Dshi_0639 0.40 -0.2
638,919 - Dshi_0639 0.50 -0.3
638,947 + Dshi_0639 0.54 -0.1
638,963 + Dshi_0639 0.56 +0.4
638,968 + Dshi_0639 0.56 -0.4
638,968 + Dshi_0639 0.56 -1.0
638,968 + Dshi_0639 0.56 +0.4
639,098 - Dshi_0639 0.73 -0.5
639,128 + Dshi_0639 0.77 -1.1
639,136 + Dshi_0639 0.78 +1.1
639,144 - Dshi_0639 0.79 +0.3
639,208 + Dshi_0639 0.88 -0.2
639,233 + -1.8
639,256 - +1.6
639,302 - -0.2
639,309 + -0.7
639,838 + Dshi_0640 0.55 +1.5
639,887 + Dshi_0640 0.61 +0.7
639,895 - Dshi_0640 0.62 +0.9
639,895 - Dshi_0640 0.62 -0.3
639,895 - Dshi_0640 0.62 +0.9
639,974 + Dshi_0640 0.72 +1.1
639,974 + Dshi_0640 0.72 +1.4
639,974 + Dshi_0640 0.72 +1.8
639,982 - Dshi_0640 0.73 +1.5
639,982 - Dshi_0640 0.73 +0.6
639,989 + Dshi_0640 0.74 +3.6
639,997 - Dshi_0640 0.75 +0.6
639,999 + Dshi_0640 0.75 +0.9
640,009 + Dshi_0640 0.76 +1.4
640,093 + Dshi_0640 0.87 +1.8
640,185 + +0.4
640,275 + Dshi_0641 0.42 +1.8
640,377 - +0.6
640,524 - Dshi_0642 0.16 +1.8
641,098 + Dshi_0642 0.77 +1.8

Or see this region's nucleotide sequence