Experiment: L-Lysine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02575 and SMc02576 overlap by 11 nucleotides SMc02576 and SMc02577 overlap by 4 nucleotides SMc02577 and SMc02578 are separated by 206 nucleotides
SMc02575: SMc02575 - ATP-dependent protease peptidase subunit, at 61,537 to 62,094
SMc02575
SMc02576: SMc02576 - acetyltransferase, at 62,084 to 62,605
SMc02576
SMc02577: SMc02577 - ATP-dependent protease ATP-binding subunit HslU, at 62,602 to 63,909
SMc02577
SMc02578: SMc02578 - hypothetical protein, at 64,116 to 65,066
SMc02578
Position (kb) 62
63
64 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 61.650 kb on + strand, within SMc02575 at 61.650 kb on + strand, within SMc02575 at 61.800 kb on - strand, within SMc02575 at 61.821 kb on + strand, within SMc02575 at 61.821 kb on + strand, within SMc02575 at 61.831 kb on + strand, within SMc02575 at 61.831 kb on + strand, within SMc02575 at 61.832 kb on - strand, within SMc02575 at 61.832 kb on - strand, within SMc02575 at 61.954 kb on + strand, within SMc02575 at 61.955 kb on - strand, within SMc02575 at 62.050 kb on + strand at 62.050 kb on + strand at 62.051 kb on - strand at 62.282 kb on + strand, within SMc02576 at 62.282 kb on + strand, within SMc02576 at 62.647 kb on + strand at 62.647 kb on + strand at 62.648 kb on - strand at 62.661 kb on + strand at 62.757 kb on + strand, within SMc02577 at 62.757 kb on + strand, within SMc02577 at 62.757 kb on + strand, within SMc02577 at 62.757 kb on + strand, within SMc02577 at 62.758 kb on - strand, within SMc02577 at 62.758 kb on - strand, within SMc02577 at 62.872 kb on + strand, within SMc02577 at 62.873 kb on - strand, within SMc02577 at 63.241 kb on + strand, within SMc02577 at 63.241 kb on + strand, within SMc02577 at 63.242 kb on - strand, within SMc02577 at 63.242 kb on - strand, within SMc02577 at 63.242 kb on - strand, within SMc02577 at 63.640 kb on + strand, within SMc02577 at 63.641 kb on - strand, within SMc02577 at 63.641 kb on - strand, within SMc02577 at 63.847 kb on + strand at 63.898 kb on + strand at 63.898 kb on + strand at 63.898 kb on + strand at 63.898 kb on + strand at 63.900 kb on + strand at 63.900 kb on + strand at 63.901 kb on - strand at 63.901 kb on - strand at 63.901 kb on - strand at 64.023 kb on + strand at 64.838 kb on + strand, within SMc02578
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine remove 61,650 + SMc02575 0.20 +0.1 61,650 + SMc02575 0.20 +2.8 61,800 - SMc02575 0.47 -0.3 61,821 + SMc02575 0.51 -0.0 61,821 + SMc02575 0.51 -0.2 61,831 + SMc02575 0.53 -0.2 61,831 + SMc02575 0.53 +0.8 61,832 - SMc02575 0.53 -1.1 61,832 - SMc02575 0.53 -0.3 61,954 + SMc02575 0.75 +0.1 61,955 - SMc02575 0.75 -0.1 62,050 + -0.3 62,050 + +0.8 62,051 - +0.0 62,282 + SMc02576 0.38 +0.1 62,282 + SMc02576 0.38 +0.6 62,647 + +0.1 62,647 + -1.2 62,648 - +0.4 62,661 + +0.1 62,757 + SMc02577 0.12 +0.7 62,757 + SMc02577 0.12 +0.1 62,757 + SMc02577 0.12 -1.2 62,757 + SMc02577 0.12 -0.2 62,758 - SMc02577 0.12 +0.2 62,758 - SMc02577 0.12 -0.5 62,872 + SMc02577 0.21 +0.6 62,873 - SMc02577 0.21 -0.3 63,241 + SMc02577 0.49 +0.2 63,241 + SMc02577 0.49 +0.2 63,242 - SMc02577 0.49 -0.0 63,242 - SMc02577 0.49 +0.0 63,242 - SMc02577 0.49 +0.5 63,640 + SMc02577 0.79 +0.0 63,641 - SMc02577 0.79 +0.8 63,641 - SMc02577 0.79 +0.3 63,847 + -0.1 63,898 + +0.8 63,898 + -0.1 63,898 + -0.4 63,898 + +0.3 63,900 + -1.0 63,900 + -0.5 63,901 - +0.6 63,901 - -0.8 63,901 - +0.2 64,023 + +1.2 64,838 + SMc02578 0.76 -2.7
Or see this region's nucleotide sequence