Experiment: L-Lysine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01092 and SMc01091 are separated by 10 nucleotides SMc01091 and SMc01090 are separated by 78 nucleotides
SMc01092: SMc01092 - transcriptional regulator, at 466,650 to 467,540
SMc01092
SMc01091: SMc01091 - hypothetical protein, at 467,551 to 467,694
SMc01091
SMc01090: SMc01090 - ATP-dependent RNA helicase, at 467,773 to 469,665
SMc01090
Position (kb) 467
468 Strain fitness (log2 ratio) -2
-1
0
1 at 466.555 kb on - strand at 466.555 kb on - strand at 466.948 kb on + strand, within SMc01092 at 466.984 kb on - strand, within SMc01092 at 467.196 kb on + strand, within SMc01092 at 467.196 kb on + strand, within SMc01092 at 467.208 kb on + strand, within SMc01092 at 467.209 kb on - strand, within SMc01092 at 467.286 kb on + strand, within SMc01092 at 467.288 kb on + strand, within SMc01092 at 467.288 kb on + strand, within SMc01092 at 467.289 kb on - strand, within SMc01092 at 467.289 kb on - strand, within SMc01092 at 467.289 kb on - strand, within SMc01092 at 467.289 kb on - strand, within SMc01092 at 467.289 kb on - strand, within SMc01092 at 467.316 kb on + strand, within SMc01092 at 467.316 kb on + strand, within SMc01092 at 467.316 kb on + strand, within SMc01092 at 467.317 kb on - strand, within SMc01092 at 467.317 kb on - strand, within SMc01092 at 467.442 kb on + strand, within SMc01092 at 467.442 kb on + strand, within SMc01092 at 467.442 kb on + strand, within SMc01092 at 467.574 kb on - strand, within SMc01091 at 467.574 kb on - strand, within SMc01091 at 467.574 kb on - strand, within SMc01091 at 467.574 kb on - strand, within SMc01091 at 468.131 kb on + strand, within SMc01090 at 468.131 kb on + strand, within SMc01090 at 468.132 kb on - strand, within SMc01090
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine remove 466,555 - -1.9 466,555 - -1.0 466,948 + SMc01092 0.33 +0.7 466,984 - SMc01092 0.37 +0.6 467,196 + SMc01092 0.61 -0.3 467,196 + SMc01092 0.61 -0.2 467,208 + SMc01092 0.63 +1.5 467,209 - SMc01092 0.63 +0.3 467,286 + SMc01092 0.71 +0.5 467,288 + SMc01092 0.72 -0.0 467,288 + SMc01092 0.72 -0.8 467,289 - SMc01092 0.72 +0.1 467,289 - SMc01092 0.72 -1.7 467,289 - SMc01092 0.72 -1.6 467,289 - SMc01092 0.72 +0.0 467,289 - SMc01092 0.72 +1.2 467,316 + SMc01092 0.75 +0.3 467,316 + SMc01092 0.75 -0.6 467,316 + SMc01092 0.75 +0.1 467,317 - SMc01092 0.75 +1.1 467,317 - SMc01092 0.75 -0.4 467,442 + SMc01092 0.89 -0.2 467,442 + SMc01092 0.89 +0.0 467,442 + SMc01092 0.89 -0.5 467,574 - SMc01091 0.16 -1.4 467,574 - SMc01091 0.16 -0.3 467,574 - SMc01091 0.16 -0.2 467,574 - SMc01091 0.16 -1.2 468,131 + SMc01090 0.19 -0.3 468,131 + SMc01090 0.19 -1.8 468,132 - SMc01090 0.19 +0.3
Or see this region's nucleotide sequence