Strain Fitness in Sinorhizobium meliloti 1021 around SMc00802

Experiment: L-Lysine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00801 and SMc00802 are separated by 201 nucleotidesSMc00802 and SMc00803 are separated by 260 nucleotides SMc00801: SMc00801 - hypothetical protein, at 820,589 to 821,245 SMc00801 SMc00802: SMc00802 - hypothetical protein, at 821,447 to 821,812 SMc00802 SMc00803: SMc00803 - hypothetical protein, at 822,073 to 822,888 SMc00803 Position (kb) 821 822Strain fitness (log2 ratio) -2 -1 0 1 2at 820.641 kb on + strandat 820.641 kb on + strandat 820.642 kb on - strandat 820.642 kb on - strandat 820.658 kb on + strand, within SMc00801at 820.737 kb on - strand, within SMc00801at 820.737 kb on - strand, within SMc00801at 820.739 kb on + strand, within SMc00801at 820.750 kb on - strand, within SMc00801at 820.785 kb on - strand, within SMc00801at 820.854 kb on - strand, within SMc00801at 820.872 kb on - strand, within SMc00801at 821.299 kb on - strandat 821.327 kb on + strandat 821.328 kb on - strandat 821.351 kb on + strandat 821.411 kb on + strandat 821.411 kb on + strandat 821.478 kb on + strandat 821.629 kb on + strand, within SMc00802at 821.902 kb on + strandat 821.903 kb on - strandat 821.903 kb on - strandat 821.940 kb on + strandat 821.940 kb on + strandat 821.955 kb on - strandat 822.086 kb on + strandat 822.155 kb on + strand, within SMc00803at 822.155 kb on + strand, within SMc00803at 822.155 kb on + strand, within SMc00803at 822.155 kb on + strand, within SMc00803at 822.156 kb on - strand, within SMc00803at 822.166 kb on + strand, within SMc00803at 822.166 kb on + strand, within SMc00803at 822.189 kb on - strand, within SMc00803at 822.198 kb on - strand, within SMc00803at 822.207 kb on - strand, within SMc00803at 822.259 kb on - strand, within SMc00803at 822.260 kb on + strand, within SMc00803at 822.260 kb on + strand, within SMc00803at 822.260 kb on + strand, within SMc00803at 822.260 kb on + strand, within SMc00803at 822.261 kb on - strand, within SMc00803at 822.261 kb on - strand, within SMc00803at 822.261 kb on - strand, within SMc00803at 822.261 kb on - strand, within SMc00803at 822.261 kb on - strand, within SMc00803at 822.404 kb on + strand, within SMc00803at 822.516 kb on + strand, within SMc00803at 822.516 kb on + strand, within SMc00803at 822.518 kb on + strand, within SMc00803at 822.642 kb on + strand, within SMc00803at 822.644 kb on + strand, within SMc00803at 822.644 kb on + strand, within SMc00803at 822.668 kb on + strandat 822.668 kb on + strand, within SMc00803

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine
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820,641 + +0.0
820,641 + +2.3
820,642 - -0.5
820,642 - -0.3
820,658 + SMc00801 0.11 -0.1
820,737 - SMc00801 0.23 +1.0
820,737 - SMc00801 0.23 -2.1
820,739 + SMc00801 0.23 -0.7
820,750 - SMc00801 0.25 +0.1
820,785 - SMc00801 0.30 +1.7
820,854 - SMc00801 0.40 +0.6
820,872 - SMc00801 0.43 -0.5
821,299 - -0.1
821,327 + -0.8
821,328 - +0.7
821,351 + -0.4
821,411 + +0.3
821,411 + -0.4
821,478 + -0.0
821,629 + SMc00802 0.50 -1.2
821,902 + +0.3
821,903 - -0.8
821,903 - +0.2
821,940 + +0.2
821,940 + +0.0
821,955 - -0.4
822,086 + -0.6
822,155 + SMc00803 0.10 -0.7
822,155 + SMc00803 0.10 +0.7
822,155 + SMc00803 0.10 +0.3
822,155 + SMc00803 0.10 +1.6
822,156 - SMc00803 0.10 +0.3
822,166 + SMc00803 0.11 +2.1
822,166 + SMc00803 0.11 +1.7
822,189 - SMc00803 0.14 -1.2
822,198 - SMc00803 0.15 +0.7
822,207 - SMc00803 0.16 -0.5
822,259 - SMc00803 0.23 -2.6
822,260 + SMc00803 0.23 -0.6
822,260 + SMc00803 0.23 +0.0
822,260 + SMc00803 0.23 -0.7
822,260 + SMc00803 0.23 +0.8
822,261 - SMc00803 0.23 -1.5
822,261 - SMc00803 0.23 -0.5
822,261 - SMc00803 0.23 -0.6
822,261 - SMc00803 0.23 -0.6
822,261 - SMc00803 0.23 -0.1
822,404 + SMc00803 0.41 +0.3
822,516 + SMc00803 0.54 -2.0
822,516 + SMc00803 0.54 -0.1
822,518 + SMc00803 0.55 +0.4
822,642 + SMc00803 0.70 -0.1
822,644 + SMc00803 0.70 -0.3
822,644 + SMc00803 0.70 +1.0
822,668 + -0.3
822,668 + SMc00803 0.73 -0.0

Or see this region's nucleotide sequence