Strain Fitness in Sinorhizobium meliloti 1021 around SMc00456

Experiment: L-Lysine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00058 and SMc00118 are separated by 203 nucleotidesSMc00118 and SMc00456 are separated by 187 nucleotidesSMc00456 and SMc00059 are separated by 514 nucleotides SMc00058: SMc00058 - transcriptional regulator, at 1,091,371 to 1,091,802 SMc00058 SMc00118: SMc00118 - hypothetical protein, at 1,092,006 to 1,092,428 SMc00118 SMc00456: SMc00456 - hypothetical protein, at 1,092,616 to 1,093,053 SMc00456 SMc00059: SMc00059 - sensor histidine kinase, at 1,093,568 to 1,095,145 SMc00059 Position (kb) 1092 1093 1094Strain fitness (log2 ratio) -2 -1 0 1at 1091.930 kb on - strandat 1092.432 kb on - strandat 1092.432 kb on - strandat 1092.432 kb on - strandat 1092.432 kb on - strandat 1092.432 kb on - strandat 1092.525 kb on - strandat 1092.525 kb on - strandat 1092.617 kb on + strandat 1092.618 kb on - strandat 1092.618 kb on - strandat 1092.666 kb on + strand, within SMc00456at 1092.667 kb on - strand, within SMc00456at 1092.803 kb on + strand, within SMc00456at 1092.886 kb on + strand, within SMc00456at 1092.886 kb on + strand, within SMc00456at 1092.901 kb on + strand, within SMc00456at 1092.901 kb on + strand, within SMc00456at 1092.901 kb on + strand, within SMc00456at 1092.902 kb on - strand, within SMc00456at 1092.902 kb on - strand, within SMc00456at 1092.902 kb on - strand, within SMc00456at 1092.905 kb on + strand, within SMc00456at 1092.905 kb on + strand, within SMc00456at 1092.906 kb on - strand, within SMc00456at 1093.096 kb on + strandat 1093.097 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine
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1,091,930 - -0.3
1,092,432 - -0.4
1,092,432 - -0.6
1,092,432 - +1.4
1,092,432 - -0.3
1,092,432 - +0.9
1,092,525 - +0.1
1,092,525 - +0.3
1,092,617 + +0.2
1,092,618 - +0.6
1,092,618 - +0.7
1,092,666 + SMc00456 0.11 -0.2
1,092,667 - SMc00456 0.12 -0.3
1,092,803 + SMc00456 0.43 -0.3
1,092,886 + SMc00456 0.62 -1.4
1,092,886 + SMc00456 0.62 -1.2
1,092,901 + SMc00456 0.65 -0.0
1,092,901 + SMc00456 0.65 -1.2
1,092,901 + SMc00456 0.65 +0.3
1,092,902 - SMc00456 0.65 -2.1
1,092,902 - SMc00456 0.65 -0.4
1,092,902 - SMc00456 0.65 -1.4
1,092,905 + SMc00456 0.66 -0.0
1,092,905 + SMc00456 0.66 -1.3
1,092,906 - SMc00456 0.66 -0.8
1,093,096 + -0.4
1,093,097 - +0.0

Or see this region's nucleotide sequence