Strain Fitness in Sinorhizobium meliloti 1021 around SMa1179

Experiment: L-Lysine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1178 and SMa1179 are separated by 171 nucleotidesSMa1179 and SMa1182 are separated by 25 nucleotides SMa1178: SMa1178 - hypothetical protein, at 644,674 to 645,504 SMa1178 SMa1179: SMa1179 - NosR regulatory protein for N2O reductase, at 645,676 to 647,943 SMa1179 SMa1182: SMa1182 - nitrous-oxide reductase, at 647,969 to 649,888 SMa1182 Position (kb) 645 646 647 648Strain fitness (log2 ratio) -2 -1 0 1 2at 644.676 kb on - strandat 644.694 kb on - strandat 644.875 kb on + strand, within SMa1178at 644.875 kb on + strand, within SMa1178at 644.959 kb on + strand, within SMa1178at 645.150 kb on - strand, within SMa1178at 645.150 kb on - strand, within SMa1178at 645.206 kb on + strand, within SMa1178at 645.265 kb on + strand, within SMa1178at 645.266 kb on - strand, within SMa1178at 645.298 kb on + strand, within SMa1178at 645.343 kb on + strand, within SMa1178at 645.411 kb on - strand, within SMa1178at 645.589 kb on - strandat 645.680 kb on - strandat 645.693 kb on - strandat 645.696 kb on + strandat 645.696 kb on + strandat 645.696 kb on + strandat 645.696 kb on + strandat 645.696 kb on + strandat 645.696 kb on + strandat 645.697 kb on - strandat 645.697 kb on - strandat 645.697 kb on - strandat 645.697 kb on - strandat 645.697 kb on - strandat 645.697 kb on - strandat 645.705 kb on - strandat 645.794 kb on - strandat 645.911 kb on - strand, within SMa1179at 646.038 kb on - strand, within SMa1179at 646.040 kb on + strand, within SMa1179at 646.040 kb on + strand, within SMa1179at 646.040 kb on + strand, within SMa1179at 646.041 kb on - strand, within SMa1179at 646.283 kb on + strand, within SMa1179at 646.348 kb on - strand, within SMa1179at 646.447 kb on + strand, within SMa1179at 646.571 kb on - strand, within SMa1179at 646.663 kb on + strand, within SMa1179at 646.685 kb on + strand, within SMa1179at 646.686 kb on - strand, within SMa1179at 646.781 kb on + strand, within SMa1179at 646.782 kb on - strand, within SMa1179at 646.782 kb on - strand, within SMa1179at 646.782 kb on - strand, within SMa1179at 646.823 kb on + strand, within SMa1179at 646.824 kb on - strand, within SMa1179at 646.824 kb on - strand, within SMa1179at 646.829 kb on - strand, within SMa1179at 646.829 kb on - strand, within SMa1179at 646.840 kb on + strand, within SMa1179at 646.840 kb on + strand, within SMa1179at 646.841 kb on - strand, within SMa1179at 647.126 kb on - strand, within SMa1179at 647.169 kb on + strand, within SMa1179at 647.170 kb on - strand, within SMa1179at 647.170 kb on - strand, within SMa1179at 647.292 kb on - strand, within SMa1179at 647.401 kb on + strand, within SMa1179at 647.401 kb on + strand, within SMa1179at 647.401 kb on + strand, within SMa1179at 647.401 kb on + strand, within SMa1179at 647.401 kb on + strand, within SMa1179at 647.402 kb on - strand, within SMa1179at 647.402 kb on - strand, within SMa1179at 647.402 kb on - strand, within SMa1179at 647.402 kb on - strand, within SMa1179at 647.575 kb on + strand, within SMa1179at 647.575 kb on + strand, within SMa1179at 647.575 kb on + strand, within SMa1179at 647.749 kb on + strandat 647.749 kb on + strandat 647.749 kb on + strandat 647.749 kb on + strandat 647.749 kb on + strandat 647.749 kb on + strandat 647.750 kb on - strandat 647.773 kb on + strandat 647.998 kb on + strandat 647.998 kb on + strandat 647.999 kb on - strandat 647.999 kb on - strandat 647.999 kb on - strandat 648.159 kb on - strandat 648.159 kb on - strandat 648.161 kb on + strand, within SMa1182at 648.161 kb on + strand, within SMa1182at 648.162 kb on - strand, within SMa1182at 648.162 kb on - strand, within SMa1182at 648.162 kb on - strand, within SMa1182at 648.162 kb on - strand, within SMa1182at 648.313 kb on - strand, within SMa1182at 648.313 kb on - strand, within SMa1182at 648.356 kb on + strand, within SMa1182at 648.407 kb on + strand, within SMa1182at 648.408 kb on - strand, within SMa1182at 648.643 kb on + strand, within SMa1182at 648.643 kb on + strand, within SMa1182at 648.735 kb on - strand, within SMa1182at 648.735 kb on - strand, within SMa1182at 648.752 kb on + strand, within SMa1182at 648.860 kb on + strand, within SMa1182at 648.912 kb on - strand, within SMa1182at 648.924 kb on + strand, within SMa1182

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine
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644,676 - +0.1
644,694 - +1.3
644,875 + SMa1178 0.24 -0.2
644,875 + SMa1178 0.24 +0.3
644,959 + SMa1178 0.34 +0.6
645,150 - SMa1178 0.57 -0.3
645,150 - SMa1178 0.57 +0.4
645,206 + SMa1178 0.64 -0.1
645,265 + SMa1178 0.71 +0.6
645,266 - SMa1178 0.71 +0.1
645,298 + SMa1178 0.75 -0.5
645,343 + SMa1178 0.81 -0.6
645,411 - SMa1178 0.89 -0.3
645,589 - +0.1
645,680 - -0.1
645,693 - +0.7
645,696 + +0.5
645,696 + +0.6
645,696 + +0.0
645,696 + +0.4
645,696 + +0.5
645,696 + +0.5
645,697 - +0.2
645,697 - +0.0
645,697 - +0.4
645,697 - +0.3
645,697 - +0.2
645,697 - +0.1
645,705 - +1.0
645,794 - +1.5
645,911 - SMa1179 0.10 +1.1
646,038 - SMa1179 0.16 +0.5
646,040 + SMa1179 0.16 -0.2
646,040 + SMa1179 0.16 +0.5
646,040 + SMa1179 0.16 +0.3
646,041 - SMa1179 0.16 +0.1
646,283 + SMa1179 0.27 +0.1
646,348 - SMa1179 0.30 +0.2
646,447 + SMa1179 0.34 -1.3
646,571 - SMa1179 0.39 +0.8
646,663 + SMa1179 0.44 +0.8
646,685 + SMa1179 0.44 +0.2
646,686 - SMa1179 0.45 +0.2
646,781 + SMa1179 0.49 +0.7
646,782 - SMa1179 0.49 -0.2
646,782 - SMa1179 0.49 -1.6
646,782 - SMa1179 0.49 +0.6
646,823 + SMa1179 0.51 +0.1
646,824 - SMa1179 0.51 +0.7
646,824 - SMa1179 0.51 +1.6
646,829 - SMa1179 0.51 +0.5
646,829 - SMa1179 0.51 +0.1
646,840 + SMa1179 0.51 +0.4
646,840 + SMa1179 0.51 -0.0
646,841 - SMa1179 0.51 +0.4
647,126 - SMa1179 0.64 +0.7
647,169 + SMa1179 0.66 +0.9
647,170 - SMa1179 0.66 +0.2
647,170 - SMa1179 0.66 -1.8
647,292 - SMa1179 0.71 +2.0
647,401 + SMa1179 0.76 +1.0
647,401 + SMa1179 0.76 +0.5
647,401 + SMa1179 0.76 -0.8
647,401 + SMa1179 0.76 -1.1
647,401 + SMa1179 0.76 +0.4
647,402 - SMa1179 0.76 +1.8
647,402 - SMa1179 0.76 -0.1
647,402 - SMa1179 0.76 +0.9
647,402 - SMa1179 0.76 +0.8
647,575 + SMa1179 0.84 +0.9
647,575 + SMa1179 0.84 -0.7
647,575 + SMa1179 0.84 -0.3
647,749 + +0.5
647,749 + -0.0
647,749 + -1.5
647,749 + -1.2
647,749 + -2.3
647,749 + -1.8
647,750 - +0.4
647,773 + -1.3
647,998 + -0.2
647,998 + +0.1
647,999 - +0.8
647,999 - +0.8
647,999 - -0.0
648,159 - +0.6
648,159 - +0.3
648,161 + SMa1182 0.10 +0.7
648,161 + SMa1182 0.10 +0.8
648,162 - SMa1182 0.10 +1.0
648,162 - SMa1182 0.10 +0.0
648,162 - SMa1182 0.10 -1.0
648,162 - SMa1182 0.10 +0.6
648,313 - SMa1182 0.18 +0.3
648,313 - SMa1182 0.18 +0.4
648,356 + SMa1182 0.20 +0.5
648,407 + SMa1182 0.23 +0.1
648,408 - SMa1182 0.23 +0.4
648,643 + SMa1182 0.35 -0.5
648,643 + SMa1182 0.35 +0.6
648,735 - SMa1182 0.40 +0.3
648,735 - SMa1182 0.40 +0.1
648,752 + SMa1182 0.41 -0.2
648,860 + SMa1182 0.46 +1.0
648,912 - SMa1182 0.49 +0.2
648,924 + SMa1182 0.50 -0.7

Or see this region's nucleotide sequence