Experiment: L-Lysine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0907 and SMa0909 are separated by 334 nucleotides SMa0909 and SMa0911 are separated by 5 nucleotides
SMa0907: SMa0907 - hypothetical protein, at 504,976 to 506,214
SMa0907
SMa0909: SMa0909 - hypothetical protein, at 506,549 to 507,442
SMa0909
SMa0911: SMa0911 - hypothetical protein, at 507,448 to 508,479
SMa0911
Position (kb) 506
507
508 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 505.768 kb on + strand, within SMa0907 at 505.955 kb on + strand, within SMa0907 at 505.955 kb on + strand, within SMa0907 at 505.955 kb on + strand, within SMa0907 at 505.956 kb on - strand, within SMa0907 at 506.012 kb on + strand at 506.012 kb on + strand, within SMa0907 at 506.013 kb on - strand, within SMa0907 at 506.013 kb on - strand, within SMa0907 at 506.034 kb on + strand, within SMa0907 at 506.034 kb on + strand, within SMa0907 at 506.035 kb on - strand, within SMa0907 at 506.036 kb on + strand, within SMa0907 at 506.036 kb on - strand, within SMa0907 at 506.170 kb on + strand at 506.170 kb on + strand at 506.171 kb on - strand at 506.254 kb on - strand at 506.318 kb on - strand at 506.992 kb on - strand, within SMa0909 at 506.992 kb on - strand, within SMa0909 at 507.511 kb on + strand at 507.511 kb on + strand at 507.511 kb on + strand at 507.542 kb on - strand at 507.542 kb on - strand at 507.586 kb on + strand, within SMa0911 at 507.586 kb on + strand, within SMa0911 at 507.586 kb on + strand, within SMa0911 at 507.586 kb on + strand, within SMa0911 at 507.587 kb on - strand, within SMa0911 at 507.587 kb on - strand, within SMa0911 at 507.859 kb on + strand, within SMa0911 at 507.859 kb on + strand, within SMa0911 at 507.860 kb on - strand, within SMa0911 at 507.860 kb on - strand at 507.860 kb on - strand, within SMa0911 at 507.860 kb on - strand, within SMa0911 at 507.928 kb on + strand, within SMa0911 at 507.957 kb on + strand, within SMa0911 at 507.958 kb on - strand, within SMa0911 at 507.958 kb on - strand, within SMa0911 at 508.271 kb on - strand, within SMa0911 at 508.340 kb on + strand, within SMa0911 at 508.340 kb on + strand at 508.341 kb on - strand, within SMa0911 at 508.344 kb on + strand, within SMa0911 at 508.345 kb on - strand, within SMa0911 at 508.345 kb on - strand, within SMa0911 at 508.345 kb on - strand, within SMa0911 at 508.349 kb on + strand, within SMa0911 at 508.349 kb on + strand, within SMa0911
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine remove 505,768 + SMa0907 0.64 +0.5 505,955 + SMa0907 0.79 +0.5 505,955 + SMa0907 0.79 -0.2 505,955 + SMa0907 0.79 +0.3 505,956 - SMa0907 0.79 +0.1 506,012 + +1.1 506,012 + SMa0907 0.84 +0.7 506,013 - SMa0907 0.84 +0.6 506,013 - SMa0907 0.84 +0.2 506,034 + SMa0907 0.85 -0.1 506,034 + SMa0907 0.85 +0.3 506,035 - SMa0907 0.85 +0.0 506,036 + SMa0907 0.86 +0.0 506,036 - SMa0907 0.86 -0.3 506,170 + +0.4 506,170 + +0.9 506,171 - -0.7 506,254 - +0.2 506,318 - +0.4 506,992 - SMa0909 0.50 +1.0 506,992 - SMa0909 0.50 +0.6 507,511 + -0.2 507,511 + -0.3 507,511 + -0.5 507,542 - +0.2 507,542 - +0.3 507,586 + SMa0911 0.13 -0.9 507,586 + SMa0911 0.13 +0.2 507,586 + SMa0911 0.13 +0.3 507,586 + SMa0911 0.13 -0.4 507,587 - SMa0911 0.13 -0.7 507,587 - SMa0911 0.13 +1.5 507,859 + SMa0911 0.40 -0.3 507,859 + SMa0911 0.40 -0.7 507,860 - SMa0911 0.40 +0.3 507,860 - +0.5 507,860 - SMa0911 0.40 -3.6 507,860 - SMa0911 0.40 +0.4 507,928 + SMa0911 0.47 -0.4 507,957 + SMa0911 0.49 -0.5 507,958 - SMa0911 0.49 -0.1 507,958 - SMa0911 0.49 +0.6 508,271 - SMa0911 0.80 -0.6 508,340 + SMa0911 0.86 -0.0 508,340 + +0.5 508,341 - SMa0911 0.87 +1.1 508,344 + SMa0911 0.87 -0.8 508,345 - SMa0911 0.87 -1.0 508,345 - SMa0911 0.87 -0.5 508,345 - SMa0911 0.87 -1.2 508,349 + SMa0911 0.87 -0.3 508,349 + SMa0911 0.87 +1.5
Or see this region's nucleotide sequence