Strain Fitness in Sinorhizobium meliloti 1021 around SMa0206

Experiment: L-Lysine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0204 and SMa0206 overlap by 4 nucleotidesSMa0206 and SMa0209 are separated by 124 nucleotides SMa0204: SMa0204 - sensor histidine kinase, at 112,578 to 113,825 SMa0204 SMa0206: SMa0206 - Response regulator, at 113,822 to 114,544 SMa0206 SMa0209: SMa0209 - hypothetical protein, at 114,669 to 115,757 SMa0209 Position (kb) 113 114 115Strain fitness (log2 ratio) -3 -2 -1 0 1at 112.952 kb on - strand, within SMa0204at 113.016 kb on + strand, within SMa0204at 113.018 kb on + strand, within SMa0204at 113.063 kb on + strand, within SMa0204at 113.063 kb on + strand, within SMa0204at 113.063 kb on + strand, within SMa0204at 113.063 kb on + strand, within SMa0204at 113.399 kb on + strand, within SMa0204at 113.747 kb on + strandat 113.748 kb on - strandat 113.748 kb on - strandat 113.748 kb on - strandat 113.864 kb on + strandat 113.864 kb on + strandat 113.865 kb on - strandat 113.959 kb on + strand, within SMa0206at 113.971 kb on + strand, within SMa0206at 114.086 kb on + strand, within SMa0206at 114.086 kb on + strand, within SMa0206at 114.087 kb on - strand, within SMa0206at 114.087 kb on - strand, within SMa0206at 114.134 kb on + strand, within SMa0206at 114.310 kb on + strand, within SMa0206at 114.311 kb on - strand, within SMa0206at 114.398 kb on + strand, within SMa0206at 114.489 kb on - strandat 114.489 kb on - strandat 114.519 kb on + strandat 114.600 kb on + strandat 114.601 kb on - strandat 114.629 kb on - strandat 114.649 kb on + strandat 114.693 kb on + strandat 114.801 kb on + strand, within SMa0209at 114.807 kb on + strand, within SMa0209at 114.807 kb on + strand, within SMa0209at 114.837 kb on - strand, within SMa0209at 114.837 kb on - strand, within SMa0209at 114.849 kb on + strand, within SMa0209at 114.853 kb on + strand, within SMa0209at 114.853 kb on + strand, within SMa0209at 114.853 kb on + strand, within SMa0209at 114.853 kb on + strand, within SMa0209at 114.980 kb on + strand, within SMa0209at 115.067 kb on + strand, within SMa0209at 115.067 kb on + strand, within SMa0209at 115.068 kb on - strand, within SMa0209at 115.071 kb on + strand, within SMa0209at 115.274 kb on + strand, within SMa0209at 115.274 kb on + strand, within SMa0209at 115.274 kb on + strand, within SMa0209at 115.275 kb on - strand, within SMa0209at 115.275 kb on - strand, within SMa0209at 115.278 kb on + strand, within SMa0209at 115.278 kb on + strand, within SMa0209at 115.278 kb on + strand, within SMa0209at 115.278 kb on + strand, within SMa0209at 115.279 kb on - strand, within SMa0209at 115.279 kb on - strand, within SMa0209at 115.280 kb on + strand, within SMa0209at 115.281 kb on - strand, within SMa0209at 115.317 kb on + strand, within SMa0209at 115.317 kb on + strand, within SMa0209at 115.318 kb on - strand, within SMa0209at 115.318 kb on - strand, within SMa0209at 115.464 kb on + strand, within SMa0209at 115.465 kb on - strand, within SMa0209

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine
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112,952 - SMa0204 0.30 -0.3
113,016 + SMa0204 0.35 -2.8
113,018 + SMa0204 0.35 -0.1
113,063 + SMa0204 0.39 +0.3
113,063 + SMa0204 0.39 +0.2
113,063 + SMa0204 0.39 +0.0
113,063 + SMa0204 0.39 -0.6
113,399 + SMa0204 0.66 -1.1
113,747 + +0.4
113,748 - +0.2
113,748 - +0.6
113,748 - +0.5
113,864 + +0.2
113,864 + +0.9
113,865 - +0.8
113,959 + SMa0206 0.19 +0.1
113,971 + SMa0206 0.21 -0.3
114,086 + SMa0206 0.37 -1.3
114,086 + SMa0206 0.37 -0.3
114,087 - SMa0206 0.37 -0.1
114,087 - SMa0206 0.37 +0.2
114,134 + SMa0206 0.43 +0.4
114,310 + SMa0206 0.67 +0.2
114,311 - SMa0206 0.68 +0.4
114,398 + SMa0206 0.80 +0.7
114,489 - -0.2
114,489 - +0.1
114,519 + -0.1
114,600 + -1.8
114,601 - -0.5
114,629 - +0.1
114,649 + -0.3
114,693 + -0.4
114,801 + SMa0209 0.12 +0.4
114,807 + SMa0209 0.13 +1.1
114,807 + SMa0209 0.13 -0.7
114,837 - SMa0209 0.15 -0.2
114,837 - SMa0209 0.15 +0.3
114,849 + SMa0209 0.17 +0.7
114,853 + SMa0209 0.17 +0.2
114,853 + SMa0209 0.17 +0.3
114,853 + SMa0209 0.17 -0.1
114,853 + SMa0209 0.17 +0.3
114,980 + SMa0209 0.29 -0.4
115,067 + SMa0209 0.37 +0.5
115,067 + SMa0209 0.37 -0.2
115,068 - SMa0209 0.37 -0.2
115,071 + SMa0209 0.37 +0.8
115,274 + SMa0209 0.56 +1.4
115,274 + SMa0209 0.56 -0.4
115,274 + SMa0209 0.56 -0.2
115,275 - SMa0209 0.56 -0.3
115,275 - SMa0209 0.56 -0.0
115,278 + SMa0209 0.56 +0.3
115,278 + SMa0209 0.56 -0.0
115,278 + SMa0209 0.56 -0.4
115,278 + SMa0209 0.56 +1.1
115,279 - SMa0209 0.56 -0.1
115,279 - SMa0209 0.56 -0.6
115,280 + SMa0209 0.56 -0.6
115,281 - SMa0209 0.56 -0.5
115,317 + SMa0209 0.60 -0.3
115,317 + SMa0209 0.60 +1.2
115,318 - SMa0209 0.60 -0.2
115,318 - SMa0209 0.60 -0.8
115,464 + SMa0209 0.73 -0.6
115,465 - SMa0209 0.73 +0.2

Or see this region's nucleotide sequence