Experiment: L-Lysine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21301 and SM_b21302 are separated by 124 nucleotides SM_b21302 and SM_b21303 are separated by 20 nucleotides SM_b21303 and SM_b21304 are separated by 33 nucleotides
SM_b21301: SM_b21301 - ly membrane-anchored aldehyde dehydrogenase, at 882,510 to 884,894
_b21301
SM_b21302: SM_b21302 - hypothetical protein, at 885,019 to 885,474
_b21302
SM_b21303: SM_b21303 - hypothetical protein, at 885,495 to 885,923
_b21303
SM_b21304: SM_b21304 - NG,NG-dimethylarginine dimethylaminohydrolase (dimethylargininase) protein, at 885,957 to 886,751
_b21304
Position (kb) 885
886 Strain fitness (log2 ratio) -2
-1
0
1 at 884.601 kb on + strand, within SM_b21301 at 884.602 kb on - strand, within SM_b21301 at 884.646 kb on - strand, within SM_b21301 at 884.646 kb on - strand, within SM_b21301 at 884.777 kb on + strand at 884.778 kb on - strand at 884.892 kb on + strand at 885.031 kb on - strand at 885.347 kb on - strand, within SM_b21302 at 885.370 kb on + strand, within SM_b21302 at 885.370 kb on + strand, within SM_b21302 at 885.425 kb on - strand, within SM_b21302 at 885.487 kb on + strand at 885.541 kb on + strand, within SM_b21303 at 885.645 kb on + strand, within SM_b21303 at 885.645 kb on + strand, within SM_b21303 at 885.645 kb on + strand, within SM_b21303 at 885.646 kb on - strand, within SM_b21303 at 885.646 kb on - strand, within SM_b21303 at 885.646 kb on - strand, within SM_b21303 at 885.728 kb on + strand, within SM_b21303 at 885.729 kb on - strand, within SM_b21303 at 885.729 kb on - strand, within SM_b21303 at 885.905 kb on - strand at 885.905 kb on - strand at 886.056 kb on + strand, within SM_b21304 at 886.057 kb on - strand, within SM_b21304 at 886.086 kb on + strand, within SM_b21304 at 886.086 kb on + strand, within SM_b21304 at 886.087 kb on - strand, within SM_b21304 at 886.690 kb on + strand at 886.691 kb on - strand at 886.691 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine remove 884,601 + SM_b21301 0.88 +0.7 884,602 - SM_b21301 0.88 +1.3 884,646 - SM_b21301 0.90 +0.0 884,646 - SM_b21301 0.90 +0.5 884,777 + -0.1 884,778 - +1.7 884,892 + -0.1 885,031 - -0.1 885,347 - SM_b21302 0.72 +0.2 885,370 + SM_b21302 0.77 +0.0 885,370 + SM_b21302 0.77 +1.1 885,425 - SM_b21302 0.89 +0.2 885,487 + +0.7 885,541 + SM_b21303 0.11 -0.2 885,645 + SM_b21303 0.35 +0.2 885,645 + SM_b21303 0.35 +0.2 885,645 + SM_b21303 0.35 -0.3 885,646 - SM_b21303 0.35 +0.5 885,646 - SM_b21303 0.35 -0.5 885,646 - SM_b21303 0.35 -1.9 885,728 + SM_b21303 0.54 +0.3 885,729 - SM_b21303 0.55 -0.7 885,729 - SM_b21303 0.55 -0.0 885,905 - +0.0 885,905 - +0.4 886,056 + SM_b21304 0.12 +0.4 886,057 - SM_b21304 0.13 +0.1 886,086 + SM_b21304 0.16 +1.7 886,086 + SM_b21304 0.16 +0.7 886,087 - SM_b21304 0.16 -0.4 886,690 + -0.6 886,691 - -0.0 886,691 - -0.4
Or see this region's nucleotide sequence