Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21153

Experiment: L-Lysine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21152 and SM_b21153 are separated by 2 nucleotidesSM_b21153 and SM_b21154 are separated by 150 nucleotidesSM_b21154 and SM_b21155 are separated by 80 nucleotides SM_b21152: SM_b21152 - sugar uptake ABC transporter ATP-binding protein, at 896,873 to 898,006 _b21152 SM_b21153: SM_b21153 - acetyltransferase, at 898,009 to 898,509 _b21153 SM_b21154: SM_b21154 - hypothetical protein, at 898,660 to 899,043 _b21154 SM_b21155: SM_b21155 - hypothetical protein, at 899,124 to 900,617 _b21155 Position (kb) 898 899Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 897.122 kb on + strand, within SM_b21152at 897.122 kb on + strand, within SM_b21152at 897.122 kb on + strand, within SM_b21152at 897.123 kb on - strand, within SM_b21152at 897.123 kb on - strand, within SM_b21152at 897.123 kb on - strand, within SM_b21152at 897.131 kb on + strand, within SM_b21152at 897.139 kb on + strand, within SM_b21152at 897.232 kb on - strand, within SM_b21152at 897.232 kb on - strand, within SM_b21152at 897.437 kb on + strand, within SM_b21152at 897.437 kb on + strand, within SM_b21152at 897.537 kb on - strand, within SM_b21152at 897.537 kb on - strand, within SM_b21152at 897.553 kb on + strand, within SM_b21152at 897.554 kb on - strand, within SM_b21152at 897.555 kb on + strand, within SM_b21152at 897.555 kb on + strand, within SM_b21152at 897.555 kb on + strand, within SM_b21152at 897.556 kb on - strand, within SM_b21152at 897.644 kb on + strand, within SM_b21152at 897.644 kb on + strand, within SM_b21152at 897.644 kb on + strand, within SM_b21152at 897.706 kb on - strand, within SM_b21152at 897.777 kb on + strand, within SM_b21152at 897.809 kb on + strand, within SM_b21152at 897.810 kb on - strand, within SM_b21152at 897.810 kb on - strand, within SM_b21152at 897.839 kb on + strand, within SM_b21152at 897.839 kb on + strand, within SM_b21152at 897.840 kb on - strand, within SM_b21152at 897.840 kb on - strand, within SM_b21152at 898.004 kb on + strandat 898.005 kb on - strandat 898.270 kb on + strand, within SM_b21153at 898.271 kb on - strand, within SM_b21153at 898.687 kb on + strandat 898.687 kb on + strandat 898.687 kb on + strandat 898.687 kb on + strandat 898.687 kb on + strandat 898.688 kb on - strandat 898.688 kb on - strandat 898.688 kb on - strandat 898.688 kb on - strandat 898.688 kb on - strandat 898.688 kb on - strandat 899.015 kb on + strandat 899.015 kb on + strandat 899.015 kb on + strandat 899.116 kb on + strandat 899.117 kb on - strandat 899.239 kb on + strandat 899.240 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine
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897,122 + SM_b21152 0.22 +1.2
897,122 + SM_b21152 0.22 +0.4
897,122 + SM_b21152 0.22 -0.6
897,123 - SM_b21152 0.22 +0.5
897,123 - SM_b21152 0.22 -0.3
897,123 - SM_b21152 0.22 -0.0
897,131 + SM_b21152 0.23 +0.1
897,139 + SM_b21152 0.23 +1.9
897,232 - SM_b21152 0.32 -0.9
897,232 - SM_b21152 0.32 +0.0
897,437 + SM_b21152 0.50 +0.4
897,437 + SM_b21152 0.50 -0.7
897,537 - SM_b21152 0.59 -0.3
897,537 - SM_b21152 0.59 -2.0
897,553 + SM_b21152 0.60 -0.5
897,554 - SM_b21152 0.60 +0.5
897,555 + SM_b21152 0.60 -0.1
897,555 + SM_b21152 0.60 -0.1
897,555 + SM_b21152 0.60 -0.4
897,556 - SM_b21152 0.60 +0.3
897,644 + SM_b21152 0.68 -0.2
897,644 + SM_b21152 0.68 -0.7
897,644 + SM_b21152 0.68 -1.5
897,706 - SM_b21152 0.73 +0.3
897,777 + SM_b21152 0.80 +0.3
897,809 + SM_b21152 0.83 -0.7
897,810 - SM_b21152 0.83 -0.3
897,810 - SM_b21152 0.83 +0.3
897,839 + SM_b21152 0.85 -0.7
897,839 + SM_b21152 0.85 -1.0
897,840 - SM_b21152 0.85 -0.6
897,840 - SM_b21152 0.85 +0.1
898,004 + -0.3
898,005 - -0.0
898,270 + SM_b21153 0.52 -1.0
898,271 - SM_b21153 0.52 +0.0
898,687 + +0.3
898,687 + +0.1
898,687 + -0.4
898,687 + -0.2
898,687 + -1.9
898,688 - -0.9
898,688 - +0.4
898,688 - -0.3
898,688 - -0.5
898,688 - -3.2
898,688 - -2.5
899,015 + -1.2
899,015 + -0.4
899,015 + -0.7
899,116 + -0.2
899,117 - +0.6
899,239 + +0.0
899,240 - -0.6

Or see this region's nucleotide sequence