Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20903

Experiment: L-Lysine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b20902 and SM_b20903 are separated by 115 nucleotidesSM_b20903 and SM_b20904 are separated by 14 nucleotidesSM_b20904 and SM_b21712 are separated by 181 nucleotides SM_b20902: SM_b20902 - sugar uptake ABC transporter substrate-binding protein precursor, at 1,311,686 to 1,312,723 _b20902 SM_b20903: SM_b20903 - sugar uptake ABC transporter permease, at 1,312,839 to 1,314,200 _b20903 SM_b20904: SM_b20904 - sugar uptake ABC transporter ATP-binding protein, at 1,314,215 to 1,315,000 _b20904 SM_b21712: SM_b21712 - tRNA-Arg, at 1,315,182 to 1,315,258 _b21712 Position (kb) 1312 1313 1314 1315Strain fitness (log2 ratio) -3 -2 -1 0 1at 1311.854 kb on - strand, within SM_b20902at 1311.854 kb on - strand, within SM_b20902at 1311.857 kb on + strand, within SM_b20902at 1311.857 kb on + strand, within SM_b20902at 1311.857 kb on + strand, within SM_b20902at 1311.857 kb on + strand, within SM_b20902at 1311.858 kb on - strand, within SM_b20902at 1311.858 kb on - strand, within SM_b20902at 1311.858 kb on - strand, within SM_b20902at 1311.858 kb on - strand, within SM_b20902at 1311.858 kb on - strand, within SM_b20902at 1311.858 kb on - strand, within SM_b20902at 1311.860 kb on - strand, within SM_b20902at 1311.860 kb on - strand, within SM_b20902at 1312.052 kb on + strand, within SM_b20902at 1312.053 kb on - strand, within SM_b20902at 1312.245 kb on - strand, within SM_b20902at 1312.245 kb on - strand, within SM_b20902at 1312.247 kb on - strand, within SM_b20902at 1312.247 kb on - strand, within SM_b20902at 1312.264 kb on + strand, within SM_b20902at 1312.312 kb on + strand, within SM_b20902at 1312.312 kb on + strand, within SM_b20902at 1312.312 kb on + strand, within SM_b20902at 1312.312 kb on + strand, within SM_b20902at 1312.313 kb on - strand, within SM_b20902at 1312.722 kb on - strandat 1312.722 kb on - strandat 1312.824 kb on + strandat 1312.824 kb on + strandat 1312.824 kb on + strandat 1312.825 kb on - strandat 1312.825 kb on - strandat 1312.825 kb on - strandat 1312.825 kb on - strandat 1313.005 kb on + strand, within SM_b20903at 1313.006 kb on - strand, within SM_b20903at 1313.227 kb on - strand, within SM_b20903at 1313.227 kb on - strand, within SM_b20903at 1313.227 kb on - strand, within SM_b20903at 1313.570 kb on - strand, within SM_b20903at 1313.589 kb on + strand, within SM_b20903at 1313.589 kb on + strand, within SM_b20903at 1313.649 kb on + strand, within SM_b20903at 1313.650 kb on - strand, within SM_b20903at 1313.653 kb on - strand, within SM_b20903at 1313.653 kb on - strand, within SM_b20903at 1313.679 kb on + strand, within SM_b20903at 1313.680 kb on - strand, within SM_b20903at 1313.814 kb on + strand, within SM_b20903at 1313.988 kb on + strand, within SM_b20903at 1313.988 kb on + strand, within SM_b20903at 1313.988 kb on + strand, within SM_b20903at 1314.180 kb on + strandat 1314.340 kb on + strand, within SM_b20904at 1314.340 kb on + strand, within SM_b20904at 1314.386 kb on + strand, within SM_b20904at 1314.387 kb on - strand, within SM_b20904

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine
remove
1,311,854 - SM_b20902 0.16 -0.3
1,311,854 - SM_b20902 0.16 -0.5
1,311,857 + SM_b20902 0.16 -0.6
1,311,857 + SM_b20902 0.16 -2.6
1,311,857 + SM_b20902 0.16 -0.9
1,311,857 + SM_b20902 0.16 -2.3
1,311,858 - SM_b20902 0.17 -0.8
1,311,858 - SM_b20902 0.17 -1.4
1,311,858 - SM_b20902 0.17 -1.3
1,311,858 - SM_b20902 0.17 +0.1
1,311,858 - SM_b20902 0.17 -3.1
1,311,858 - SM_b20902 0.17 -1.5
1,311,860 - SM_b20902 0.17 -2.1
1,311,860 - SM_b20902 0.17 -0.8
1,312,052 + SM_b20902 0.35 -1.1
1,312,053 - SM_b20902 0.35 -1.2
1,312,245 - SM_b20902 0.54 -0.8
1,312,245 - SM_b20902 0.54 -0.3
1,312,247 - SM_b20902 0.54 -1.1
1,312,247 - SM_b20902 0.54 -0.8
1,312,264 + SM_b20902 0.56 -0.9
1,312,312 + SM_b20902 0.60 -1.2
1,312,312 + SM_b20902 0.60 -0.3
1,312,312 + SM_b20902 0.60 -2.8
1,312,312 + SM_b20902 0.60 -2.0
1,312,313 - SM_b20902 0.60 -1.1
1,312,722 - -0.6
1,312,722 - -1.7
1,312,824 + -1.0
1,312,824 + -1.1
1,312,824 + -0.7
1,312,825 - -1.6
1,312,825 - -0.8
1,312,825 - -1.8
1,312,825 - -2.3
1,313,005 + SM_b20903 0.12 -0.9
1,313,006 - SM_b20903 0.12 -0.8
1,313,227 - SM_b20903 0.28 -2.1
1,313,227 - SM_b20903 0.28 -1.1
1,313,227 - SM_b20903 0.28 -1.1
1,313,570 - SM_b20903 0.54 -1.9
1,313,589 + SM_b20903 0.55 -1.0
1,313,589 + SM_b20903 0.55 -1.6
1,313,649 + SM_b20903 0.59 -1.1
1,313,650 - SM_b20903 0.60 -0.5
1,313,653 - SM_b20903 0.60 +0.4
1,313,653 - SM_b20903 0.60 -1.0
1,313,679 + SM_b20903 0.62 -0.6
1,313,680 - SM_b20903 0.62 -1.5
1,313,814 + SM_b20903 0.72 -2.4
1,313,988 + SM_b20903 0.84 -2.2
1,313,988 + SM_b20903 0.84 -1.0
1,313,988 + SM_b20903 0.84 -1.3
1,314,180 + -1.2
1,314,340 + SM_b20904 0.16 -1.6
1,314,340 + SM_b20904 0.16 -1.5
1,314,386 + SM_b20904 0.22 -0.3
1,314,387 - SM_b20904 0.22 +0.7

Or see this region's nucleotide sequence