Experiment: L-Lysine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20599 and SM_b20600 are separated by 62 nucleotides SM_b20600 and SM_b21707 are separated by 171 nucleotides SM_b21707 and SM_b20602 are separated by 18 nucleotides
SM_b20599: SM_b20599 - smb01f11-replication protein, at 1,612,756 to 1,613,817
_b20599
SM_b20600: SM_b20600 - hypothetical protein, at 1,613,880 to 1,614,503
_b20600
SM_b21707: SM_b21707 - branched-chain amino acid ABC transporter ATP-binding protein, at 1,614,675 to 1,615,370
_b21707
SM_b20602: SM_b20602 - branched-chain amino acid ABC transporter ATP-binding protein, at 1,615,389 to 1,616,141
_b20602
Position (kb)
1613
1614
1615 Strain fitness (log2 ratio)
-2
-1
0
1 at 1613.816 kb on - strand at 1613.883 kb on + strand at 1614.099 kb on + strand, within SM_b20600 at 1614.100 kb on - strand, within SM_b20600 at 1614.227 kb on - strand, within SM_b20600 at 1614.264 kb on - strand, within SM_b20600 at 1614.310 kb on - strand, within SM_b20600 at 1614.450 kb on + strand at 1614.685 kb on - strand at 1614.759 kb on - strand, within SM_b21707 at 1614.760 kb on + strand, within SM_b21707 at 1614.760 kb on + strand, within SM_b21707 at 1614.760 kb on + strand, within SM_b21707 at 1614.760 kb on + strand, within SM_b21707 at 1614.760 kb on + strand, within SM_b21707 at 1614.761 kb on - strand, within SM_b21707 at 1614.797 kb on - strand, within SM_b21707 at 1614.797 kb on - strand, within SM_b21707 at 1614.797 kb on - strand, within SM_b21707 at 1614.842 kb on - strand, within SM_b21707 at 1615.026 kb on + strand, within SM_b21707 at 1615.026 kb on + strand, within SM_b21707 at 1615.026 kb on + strand, within SM_b21707 at 1615.026 kb on + strand, within SM_b21707 at 1615.027 kb on - strand, within SM_b21707 at 1615.027 kb on - strand at 1615.027 kb on - strand, within SM_b21707 at 1615.027 kb on - strand, within SM_b21707 at 1615.027 kb on - strand, within SM_b21707 at 1615.027 kb on - strand, within SM_b21707 at 1615.027 kb on - strand, within SM_b21707 at 1615.027 kb on - strand, within SM_b21707 at 1615.027 kb on - strand, within SM_b21707 at 1615.028 kb on + strand, within SM_b21707 at 1615.028 kb on + strand, within SM_b21707 at 1615.029 kb on - strand, within SM_b21707 at 1615.029 kb on - strand, within SM_b21707 at 1615.132 kb on + strand, within SM_b21707 at 1615.340 kb on - strand at 1615.402 kb on + strand at 1615.402 kb on + strand at 1615.402 kb on + strand at 1615.402 kb on + strand at 1615.402 kb on + strand at 1615.403 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine remove 1,613,816 - -0.2 1,613,883 + -0.8 1,614,099 + SM_b20600 0.35 -1.1 1,614,100 - SM_b20600 0.35 -0.2 1,614,227 - SM_b20600 0.56 -1.3 1,614,264 - SM_b20600 0.62 -0.6 1,614,310 - SM_b20600 0.69 -0.4 1,614,450 + +0.2 1,614,685 - +0.6 1,614,759 - SM_b21707 0.12 +0.1 1,614,760 + SM_b21707 0.12 +0.7 1,614,760 + SM_b21707 0.12 -0.5 1,614,760 + SM_b21707 0.12 -0.3 1,614,760 + SM_b21707 0.12 -0.5 1,614,760 + SM_b21707 0.12 -1.3 1,614,761 - SM_b21707 0.12 +0.3 1,614,797 - SM_b21707 0.18 +0.0 1,614,797 - SM_b21707 0.18 -0.7 1,614,797 - SM_b21707 0.18 +1.3 1,614,842 - SM_b21707 0.24 -0.2 1,615,026 + SM_b21707 0.50 +0.2 1,615,026 + SM_b21707 0.50 +0.1 1,615,026 + SM_b21707 0.50 -0.2 1,615,026 + SM_b21707 0.50 +0.1 1,615,027 - SM_b21707 0.51 -0.5 1,615,027 - -0.9 1,615,027 - SM_b21707 0.51 +0.8 1,615,027 - SM_b21707 0.51 +0.7 1,615,027 - SM_b21707 0.51 +0.2 1,615,027 - SM_b21707 0.51 +0.9 1,615,027 - SM_b21707 0.51 -0.1 1,615,027 - SM_b21707 0.51 -2.1 1,615,027 - SM_b21707 0.51 +0.4 1,615,028 + SM_b21707 0.51 +0.7 1,615,028 + SM_b21707 0.51 -0.3 1,615,029 - SM_b21707 0.51 +0.4 1,615,029 - SM_b21707 0.51 +0.3 1,615,132 + SM_b21707 0.66 +0.5 1,615,340 - -0.0 1,615,402 + -0.5 1,615,402 + +0.3 1,615,402 + -0.0 1,615,402 + -1.3 1,615,402 + +0.2 1,615,403 - -0.3
Or see this region's nucleotide sequence