Experiment: Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_20225 and IAI47_20230 are separated by 360 nucleotides IAI47_20230 and IAI47_20235 are separated by 24 nucleotides
IAI47_20225: IAI47_20225 - aldose 1-epimerase family protein, at 279,715 to 280,923
_20225
IAI47_20230: IAI47_20230 - peroxiredoxin, at 281,284 to 281,847
_20230
IAI47_20235: IAI47_20235 - thioredoxin family protein, at 281,872 to 283,113
_20235
Position (kb) 281
282 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 280.308 kb on + strand, within IAI47_20225 at 280.308 kb on + strand, within IAI47_20225 at 280.308 kb on + strand, within IAI47_20225 at 280.309 kb on - strand, within IAI47_20225 at 280.309 kb on - strand, within IAI47_20225 at 280.322 kb on + strand, within IAI47_20225 at 280.323 kb on - strand, within IAI47_20225 at 280.323 kb on - strand, within IAI47_20225 at 280.389 kb on + strand, within IAI47_20225 at 280.458 kb on + strand, within IAI47_20225 at 280.459 kb on - strand, within IAI47_20225 at 280.472 kb on + strand, within IAI47_20225 at 280.472 kb on + strand, within IAI47_20225 at 280.473 kb on - strand, within IAI47_20225 at 280.584 kb on + strand, within IAI47_20225 at 280.584 kb on + strand, within IAI47_20225 at 280.584 kb on + strand, within IAI47_20225 at 280.584 kb on + strand, within IAI47_20225 at 280.585 kb on - strand, within IAI47_20225 at 280.585 kb on - strand, within IAI47_20225 at 280.585 kb on - strand, within IAI47_20225 at 280.585 kb on - strand, within IAI47_20225 at 280.586 kb on + strand, within IAI47_20225 at 280.586 kb on + strand, within IAI47_20225 at 280.586 kb on + strand, within IAI47_20225 at 280.586 kb on + strand, within IAI47_20225 at 280.587 kb on - strand, within IAI47_20225 at 280.587 kb on - strand, within IAI47_20225 at 280.587 kb on - strand, within IAI47_20225 at 280.587 kb on - strand, within IAI47_20225 at 280.629 kb on + strand, within IAI47_20225 at 280.630 kb on - strand, within IAI47_20225 at 280.630 kb on - strand, within IAI47_20225 at 280.689 kb on + strand, within IAI47_20225 at 280.690 kb on - strand, within IAI47_20225 at 280.690 kb on - strand, within IAI47_20225 at 280.690 kb on - strand, within IAI47_20225 at 280.725 kb on + strand, within IAI47_20225 at 280.895 kb on - strand at 280.898 kb on - strand at 280.925 kb on - strand at 281.039 kb on + strand at 281.039 kb on + strand at 281.040 kb on - strand at 281.040 kb on - strand at 281.060 kb on - strand at 281.063 kb on + strand at 281.063 kb on + strand at 281.096 kb on + strand at 281.120 kb on + strand at 281.171 kb on + strand at 281.172 kb on - strand at 281.180 kb on + strand at 281.180 kb on + strand at 281.181 kb on - strand at 281.322 kb on + strand at 281.322 kb on + strand at 281.323 kb on - strand at 281.471 kb on + strand, within IAI47_20230 at 281.471 kb on + strand, within IAI47_20230 at 281.471 kb on + strand, within IAI47_20230 at 281.471 kb on + strand, within IAI47_20230 at 281.472 kb on - strand, within IAI47_20230 at 281.472 kb on - strand, within IAI47_20230 at 281.472 kb on - strand, within IAI47_20230 at 281.472 kb on - strand, within IAI47_20230 at 281.472 kb on - strand, within IAI47_20230 at 281.476 kb on + strand, within IAI47_20230 at 281.476 kb on + strand, within IAI47_20230 at 281.476 kb on + strand, within IAI47_20230 at 281.477 kb on - strand, within IAI47_20230 at 281.550 kb on + strand, within IAI47_20230 at 281.592 kb on + strand, within IAI47_20230 at 281.592 kb on + strand, within IAI47_20230 at 281.593 kb on - strand, within IAI47_20230 at 281.593 kb on - strand, within IAI47_20230 at 281.664 kb on + strand, within IAI47_20230 at 281.730 kb on + strand, within IAI47_20230 at 281.731 kb on + strand, within IAI47_20230 at 281.731 kb on + strand, within IAI47_20230 at 281.731 kb on + strand, within IAI47_20230 at 281.731 kb on + strand, within IAI47_20230 at 281.731 kb on + strand, within IAI47_20230 at 281.731 kb on + strand, within IAI47_20230 at 281.731 kb on + strand, within IAI47_20230 at 281.732 kb on - strand, within IAI47_20230 at 281.732 kb on - strand, within IAI47_20230 at 281.787 kb on + strand, within IAI47_20230 at 281.787 kb on + strand, within IAI47_20230 at 281.787 kb on + strand, within IAI47_20230 at 281.787 kb on + strand, within IAI47_20230 at 281.788 kb on - strand, within IAI47_20230 at 281.793 kb on + strand at 281.793 kb on + strand at 281.794 kb on - strand at 281.817 kb on + strand at 281.825 kb on - strand at 281.845 kb on + strand at 281.845 kb on + strand at 281.866 kb on + strand at 281.866 kb on + strand at 281.866 kb on + strand at 281.866 kb on + strand at 281.866 kb on + strand at 281.866 kb on + strand at 281.866 kb on + strand at 281.866 kb on + strand at 281.866 kb on + strand at 281.866 kb on + strand at 281.867 kb on - strand at 281.867 kb on - strand at 281.867 kb on - strand at 281.867 kb on - strand at 281.867 kb on - strand at 281.867 kb on - strand at 281.867 kb on - strand at 281.867 kb on - strand at 281.868 kb on + strand at 281.868 kb on + strand at 281.868 kb on + strand at 281.868 kb on + strand at 281.868 kb on + strand at 281.868 kb on + strand at 281.868 kb on + strand at 281.868 kb on + strand at 281.869 kb on - strand at 281.869 kb on - strand at 281.869 kb on - strand at 281.869 kb on - strand at 281.869 kb on - strand at 281.869 kb on - strand at 281.869 kb on - strand at 281.911 kb on - strand at 281.911 kb on - strand at 282.059 kb on + strand, within IAI47_20235 at 282.059 kb on + strand, within IAI47_20235 at 282.059 kb on + strand, within IAI47_20235 at 282.060 kb on - strand, within IAI47_20235 at 282.060 kb on - strand, within IAI47_20235 at 282.060 kb on - strand, within IAI47_20235 at 282.062 kb on + strand, within IAI47_20235 at 282.062 kb on + strand, within IAI47_20235 at 282.062 kb on + strand, within IAI47_20235 at 282.063 kb on - strand, within IAI47_20235 at 282.138 kb on - strand, within IAI47_20235 at 282.322 kb on + strand, within IAI47_20235 at 282.323 kb on - strand, within IAI47_20235 at 282.323 kb on - strand, within IAI47_20235 at 282.348 kb on + strand, within IAI47_20235 at 282.348 kb on + strand, within IAI47_20235 at 282.348 kb on + strand, within IAI47_20235 at 282.348 kb on + strand, within IAI47_20235 at 282.349 kb on - strand, within IAI47_20235 at 282.349 kb on - strand, within IAI47_20235 at 282.349 kb on - strand, within IAI47_20235 at 282.357 kb on + strand, within IAI47_20235 at 282.357 kb on + strand, within IAI47_20235 at 282.358 kb on - strand, within IAI47_20235 at 282.358 kb on - strand, within IAI47_20235 at 282.358 kb on - strand, within IAI47_20235 at 282.396 kb on + strand, within IAI47_20235 at 282.397 kb on - strand, within IAI47_20235 at 282.397 kb on - strand, within IAI47_20235 at 282.404 kb on + strand, within IAI47_20235 at 282.405 kb on - strand, within IAI47_20235 at 282.431 kb on + strand, within IAI47_20235 at 282.487 kb on - strand, within IAI47_20235 at 282.487 kb on - strand, within IAI47_20235 at 282.579 kb on + strand, within IAI47_20235 at 282.621 kb on + strand, within IAI47_20235 at 282.621 kb on + strand, within IAI47_20235 at 282.621 kb on + strand, within IAI47_20235 at 282.622 kb on - strand, within IAI47_20235 at 282.644 kb on + strand, within IAI47_20235 at 282.644 kb on + strand, within IAI47_20235 at 282.644 kb on + strand, within IAI47_20235 at 282.644 kb on + strand, within IAI47_20235 at 282.644 kb on + strand, within IAI47_20235 at 282.645 kb on - strand, within IAI47_20235 at 282.645 kb on - strand, within IAI47_20235 at 282.789 kb on + strand, within IAI47_20235 at 282.789 kb on + strand, within IAI47_20235 at 282.790 kb on - strand, within IAI47_20235 at 282.792 kb on + strand, within IAI47_20235 at 282.793 kb on - strand, within IAI47_20235 at 282.793 kb on - strand, within IAI47_20235 at 282.811 kb on - strand, within IAI47_20235 at 282.826 kb on - strand, within IAI47_20235 at 282.840 kb on + strand, within IAI47_20235 at 282.841 kb on - strand, within IAI47_20235 at 282.841 kb on - strand, within IAI47_20235 at 282.841 kb on - strand, within IAI47_20235 at 282.841 kb on - strand, within IAI47_20235 at 282.841 kb on - strand, within IAI47_20235 at 282.843 kb on + strand, within IAI47_20235 at 282.843 kb on + strand, within IAI47_20235 at 282.843 kb on + strand, within IAI47_20235 at 282.843 kb on + strand, within IAI47_20235 at 282.843 kb on + strand, within IAI47_20235 at 282.843 kb on + strand, within IAI47_20235 at 282.843 kb on + strand, within IAI47_20235 at 282.843 kb on + strand, within IAI47_20235 at 282.844 kb on - strand, within IAI47_20235 at 282.844 kb on - strand, within IAI47_20235 at 282.844 kb on - strand, within IAI47_20235
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 remove 280,308 + IAI47_20225 0.49 -1.9 280,308 + IAI47_20225 0.49 +0.2 280,308 + IAI47_20225 0.49 -1.2 280,309 - IAI47_20225 0.49 +0.7 280,309 - IAI47_20225 0.49 -1.4 280,322 + IAI47_20225 0.50 +1.5 280,323 - IAI47_20225 0.50 -1.1 280,323 - IAI47_20225 0.50 +0.8 280,389 + IAI47_20225 0.56 -0.2 280,458 + IAI47_20225 0.61 +1.4 280,459 - IAI47_20225 0.62 +0.2 280,472 + IAI47_20225 0.63 -1.3 280,472 + IAI47_20225 0.63 -1.0 280,473 - IAI47_20225 0.63 -0.0 280,584 + IAI47_20225 0.72 +0.3 280,584 + IAI47_20225 0.72 -1.5 280,584 + IAI47_20225 0.72 -1.0 280,584 + IAI47_20225 0.72 -1.9 280,585 - IAI47_20225 0.72 +2.2 280,585 - IAI47_20225 0.72 +0.4 280,585 - IAI47_20225 0.72 +0.6 280,585 - IAI47_20225 0.72 +0.1 280,586 + IAI47_20225 0.72 +1.1 280,586 + IAI47_20225 0.72 -0.8 280,586 + IAI47_20225 0.72 +1.3 280,586 + IAI47_20225 0.72 +1.3 280,587 - IAI47_20225 0.72 -0.5 280,587 - IAI47_20225 0.72 +2.7 280,587 - IAI47_20225 0.72 -1.0 280,587 - IAI47_20225 0.72 +0.2 280,629 + IAI47_20225 0.76 -2.0 280,630 - IAI47_20225 0.76 -0.3 280,630 - IAI47_20225 0.76 +1.1 280,689 + IAI47_20225 0.81 +0.4 280,690 - IAI47_20225 0.81 -1.9 280,690 - IAI47_20225 0.81 -2.4 280,690 - IAI47_20225 0.81 +2.1 280,725 + IAI47_20225 0.84 -0.0 280,895 - -1.5 280,898 - +0.2 280,925 - +0.8 281,039 + +2.5 281,039 + -1.0 281,040 - +0.4 281,040 - -0.2 281,060 - +0.2 281,063 + -0.4 281,063 + -0.0 281,096 + -2.2 281,120 + +2.8 281,171 + -2.3 281,172 - -2.3 281,180 + +0.8 281,180 + -0.2 281,181 - +0.7 281,322 + -2.3 281,322 + -1.5 281,323 - -0.1 281,471 + IAI47_20230 0.33 -0.5 281,471 + IAI47_20230 0.33 -0.8 281,471 + IAI47_20230 0.33 -2.9 281,471 + IAI47_20230 0.33 -2.7 281,472 - IAI47_20230 0.33 -0.0 281,472 - IAI47_20230 0.33 -1.0 281,472 - IAI47_20230 0.33 -1.3 281,472 - IAI47_20230 0.33 +1.1 281,472 - IAI47_20230 0.33 +2.1 281,476 + IAI47_20230 0.34 +1.8 281,476 + IAI47_20230 0.34 -1.5 281,476 + IAI47_20230 0.34 +0.6 281,477 - IAI47_20230 0.34 +2.8 281,550 + IAI47_20230 0.47 -1.1 281,592 + IAI47_20230 0.55 -1.8 281,592 + IAI47_20230 0.55 -1.5 281,593 - IAI47_20230 0.55 +1.2 281,593 - IAI47_20230 0.55 -1.3 281,664 + IAI47_20230 0.67 -0.8 281,730 + IAI47_20230 0.79 +0.1 281,731 + IAI47_20230 0.79 -0.5 281,731 + IAI47_20230 0.79 +0.5 281,731 + IAI47_20230 0.79 -1.3 281,731 + IAI47_20230 0.79 +2.5 281,731 + IAI47_20230 0.79 +0.1 281,731 + IAI47_20230 0.79 +0.2 281,731 + IAI47_20230 0.79 -1.5 281,732 - IAI47_20230 0.79 -0.2 281,732 - IAI47_20230 0.79 -0.2 281,787 + IAI47_20230 0.89 +2.0 281,787 + IAI47_20230 0.89 -0.7 281,787 + IAI47_20230 0.89 +1.2 281,787 + IAI47_20230 0.89 -1.6 281,788 - IAI47_20230 0.89 -2.2 281,793 + +3.9 281,793 + -0.5 281,794 - -1.9 281,817 + -0.2 281,825 - -2.1 281,845 + +1.1 281,845 + -0.3 281,866 + +0.8 281,866 + +2.0 281,866 + +1.0 281,866 + -1.6 281,866 + -1.0 281,866 + +0.2 281,866 + +0.0 281,866 + +1.1 281,866 + +0.5 281,866 + +0.7 281,867 - -0.5 281,867 - +0.2 281,867 - -1.2 281,867 - -1.6 281,867 - +1.3 281,867 - -1.5 281,867 - -1.3 281,867 - +1.1 281,868 + -2.4 281,868 + -1.1 281,868 + -1.3 281,868 + +1.1 281,868 + -0.3 281,868 + -1.7 281,868 + +0.3 281,868 + -2.2 281,869 - -0.1 281,869 - -0.5 281,869 - +0.2 281,869 - +0.3 281,869 - +0.8 281,869 - +0.1 281,869 - +0.4 281,911 - -0.3 281,911 - -1.3 282,059 + IAI47_20235 0.15 -1.9 282,059 + IAI47_20235 0.15 -1.5 282,059 + IAI47_20235 0.15 -0.2 282,060 - IAI47_20235 0.15 -0.8 282,060 - IAI47_20235 0.15 -3.0 282,060 - IAI47_20235 0.15 -0.8 282,062 + IAI47_20235 0.15 -0.5 282,062 + IAI47_20235 0.15 +3.4 282,062 + IAI47_20235 0.15 -2.3 282,063 - IAI47_20235 0.15 -1.9 282,138 - IAI47_20235 0.21 -0.6 282,322 + IAI47_20235 0.36 -0.3 282,323 - IAI47_20235 0.36 -2.3 282,323 - IAI47_20235 0.36 -2.5 282,348 + IAI47_20235 0.38 +0.6 282,348 + IAI47_20235 0.38 -1.3 282,348 + IAI47_20235 0.38 +0.7 282,348 + IAI47_20235 0.38 +1.7 282,349 - IAI47_20235 0.38 -0.8 282,349 - IAI47_20235 0.38 +1.1 282,349 - IAI47_20235 0.38 -0.2 282,357 + IAI47_20235 0.39 -0.1 282,357 + IAI47_20235 0.39 -0.4 282,358 - IAI47_20235 0.39 -1.9 282,358 - IAI47_20235 0.39 -1.5 282,358 - IAI47_20235 0.39 +0.2 282,396 + IAI47_20235 0.42 +0.4 282,397 - IAI47_20235 0.42 -0.3 282,397 - IAI47_20235 0.42 +0.2 282,404 + IAI47_20235 0.43 -0.9 282,405 - IAI47_20235 0.43 -0.5 282,431 + IAI47_20235 0.45 -0.8 282,487 - IAI47_20235 0.50 -0.6 282,487 - IAI47_20235 0.50 -0.5 282,579 + IAI47_20235 0.57 -1.0 282,621 + IAI47_20235 0.60 +0.3 282,621 + IAI47_20235 0.60 -0.2 282,621 + IAI47_20235 0.60 -2.2 282,622 - IAI47_20235 0.60 +1.0 282,644 + IAI47_20235 0.62 -0.1 282,644 + IAI47_20235 0.62 +0.5 282,644 + IAI47_20235 0.62 +0.9 282,644 + IAI47_20235 0.62 +0.5 282,644 + IAI47_20235 0.62 +1.1 282,645 - IAI47_20235 0.62 -1.0 282,645 - IAI47_20235 0.62 -2.9 282,789 + IAI47_20235 0.74 -0.2 282,789 + IAI47_20235 0.74 -1.1 282,790 - IAI47_20235 0.74 -2.1 282,792 + IAI47_20235 0.74 +2.3 282,793 - IAI47_20235 0.74 +0.2 282,793 - IAI47_20235 0.74 +0.2 282,811 - IAI47_20235 0.76 -2.3 282,826 - IAI47_20235 0.77 -1.5 282,840 + IAI47_20235 0.78 -0.8 282,841 - IAI47_20235 0.78 -2.2 282,841 - IAI47_20235 0.78 +0.9 282,841 - IAI47_20235 0.78 -0.5 282,841 - IAI47_20235 0.78 -1.0 282,841 - IAI47_20235 0.78 -0.3 282,843 + IAI47_20235 0.78 -0.5 282,843 + IAI47_20235 0.78 +0.6 282,843 + IAI47_20235 0.78 -0.6 282,843 + IAI47_20235 0.78 -1.1 282,843 + IAI47_20235 0.78 +1.1 282,843 + IAI47_20235 0.78 +0.3 282,843 + IAI47_20235 0.78 +1.1 282,843 + IAI47_20235 0.78 +0.6 282,844 - IAI47_20235 0.78 -0.1 282,844 - IAI47_20235 0.78 -2.3 282,844 - IAI47_20235 0.78 +1.8
Or see this region's nucleotide sequence