Strain Fitness in Pantoea sp. MT58 around IAI47_19800

Experiment: Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI47_19795 and IAI47_19800 are separated by 12 nucleotidesIAI47_19800 and IAI47_19805 overlap by 1 nucleotidesIAI47_19805 and IAI47_19810 are separated by 86 nucleotides IAI47_19795: IAI47_19795 - sugar porter family MFS transporter, at 184,691 to 186,139 _19795 IAI47_19800: IAI47_19800 - Gfo/Idh/MocA family oxidoreductase, at 186,152 to 187,165 _19800 IAI47_19805: IAI47_19805 - TIM barrel protein, at 187,165 to 187,944 _19805 IAI47_19810: IAI47_19810 - substrate-binding domain-containing protein, at 188,031 to 188,954 _19810 Position (kb) 186 187 188Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 185.156 kb on + strand, within IAI47_19795at 185.244 kb on + strand, within IAI47_19795at 185.244 kb on + strand, within IAI47_19795at 185.244 kb on + strand, within IAI47_19795at 185.244 kb on + strand, within IAI47_19795at 185.244 kb on + strand, within IAI47_19795at 185.244 kb on + strand, within IAI47_19795at 185.368 kb on - strand, within IAI47_19795at 185.368 kb on - strand, within IAI47_19795at 185.447 kb on + strand, within IAI47_19795at 185.447 kb on + strand, within IAI47_19795at 185.448 kb on - strand, within IAI47_19795at 185.448 kb on - strand, within IAI47_19795at 185.448 kb on - strand, within IAI47_19795at 185.448 kb on - strand, within IAI47_19795at 185.448 kb on - strand, within IAI47_19795at 185.448 kb on - strand, within IAI47_19795at 185.448 kb on - strand, within IAI47_19795at 185.448 kb on - strand, within IAI47_19795at 185.448 kb on - strand, within IAI47_19795at 185.449 kb on + strand, within IAI47_19795at 185.449 kb on + strand, within IAI47_19795at 185.449 kb on + strand, within IAI47_19795at 185.450 kb on - strand, within IAI47_19795at 185.476 kb on + strand, within IAI47_19795at 185.514 kb on - strand, within IAI47_19795at 185.514 kb on - strand, within IAI47_19795at 185.532 kb on + strand, within IAI47_19795at 185.533 kb on - strand, within IAI47_19795at 185.623 kb on + strand, within IAI47_19795at 185.624 kb on - strand, within IAI47_19795at 185.686 kb on + strand, within IAI47_19795at 185.686 kb on + strand, within IAI47_19795at 185.686 kb on + strand, within IAI47_19795at 185.687 kb on - strand, within IAI47_19795at 185.687 kb on - strand, within IAI47_19795at 185.711 kb on - strand, within IAI47_19795at 185.711 kb on - strand, within IAI47_19795at 185.711 kb on - strand, within IAI47_19795at 185.766 kb on + strand, within IAI47_19795at 185.767 kb on - strand, within IAI47_19795at 185.767 kb on - strand, within IAI47_19795at 185.821 kb on + strand, within IAI47_19795at 185.867 kb on + strand, within IAI47_19795at 185.867 kb on + strand, within IAI47_19795at 185.867 kb on + strand, within IAI47_19795at 185.868 kb on - strand, within IAI47_19795at 185.868 kb on - strand, within IAI47_19795at 185.876 kb on - strand, within IAI47_19795at 185.881 kb on + strand, within IAI47_19795at 185.882 kb on - strand, within IAI47_19795at 185.961 kb on + strand, within IAI47_19795at 185.962 kb on - strand, within IAI47_19795at 185.962 kb on - strand, within IAI47_19795at 185.962 kb on - strand, within IAI47_19795at 185.962 kb on - strand, within IAI47_19795at 186.137 kb on + strandat 186.138 kb on - strandat 186.140 kb on + strandat 186.140 kb on + strandat 186.168 kb on + strandat 186.169 kb on - strandat 186.320 kb on + strand, within IAI47_19800at 186.320 kb on + strand, within IAI47_19800at 186.323 kb on - strand, within IAI47_19800at 186.451 kb on + strand, within IAI47_19800at 186.452 kb on - strand, within IAI47_19800at 186.452 kb on - strand, within IAI47_19800at 186.517 kb on - strand, within IAI47_19800at 186.529 kb on + strand, within IAI47_19800at 186.604 kb on + strand, within IAI47_19800at 186.605 kb on - strand, within IAI47_19800at 186.702 kb on + strand, within IAI47_19800at 186.740 kb on + strand, within IAI47_19800at 186.775 kb on + strand, within IAI47_19800at 186.781 kb on + strand, within IAI47_19800at 186.796 kb on + strand, within IAI47_19800at 186.797 kb on - strand, within IAI47_19800at 186.812 kb on - strand, within IAI47_19800at 186.812 kb on - strand, within IAI47_19800at 186.832 kb on + strand, within IAI47_19800at 186.838 kb on + strand, within IAI47_19800at 186.838 kb on + strand, within IAI47_19800at 186.839 kb on - strand, within IAI47_19800at 186.839 kb on - strand, within IAI47_19800at 186.839 kb on - strand, within IAI47_19800at 186.840 kb on + strand, within IAI47_19800at 186.840 kb on + strand, within IAI47_19800at 186.841 kb on - strand, within IAI47_19800at 186.866 kb on + strand, within IAI47_19800at 186.866 kb on + strand, within IAI47_19800at 186.866 kb on + strand, within IAI47_19800at 186.867 kb on - strand, within IAI47_19800at 186.867 kb on - strand, within IAI47_19800at 186.872 kb on + strand, within IAI47_19800at 186.872 kb on + strand, within IAI47_19800at 186.950 kb on + strand, within IAI47_19800at 186.951 kb on - strand, within IAI47_19800at 186.976 kb on + strand, within IAI47_19800at 186.977 kb on - strand, within IAI47_19800at 187.013 kb on + strand, within IAI47_19800at 187.013 kb on + strand, within IAI47_19800at 187.013 kb on + strand, within IAI47_19800at 187.013 kb on + strand, within IAI47_19800at 187.013 kb on + strand, within IAI47_19800at 187.013 kb on + strand, within IAI47_19800at 187.014 kb on - strand, within IAI47_19800at 187.014 kb on - strand, within IAI47_19800at 187.014 kb on - strand, within IAI47_19800at 187.014 kb on - strand, within IAI47_19800at 187.014 kb on - strand, within IAI47_19800at 187.014 kb on - strand, within IAI47_19800at 187.014 kb on - strand, within IAI47_19800at 187.128 kb on + strandat 187.203 kb on - strandat 187.203 kb on - strandat 187.203 kb on - strandat 187.221 kb on + strandat 187.290 kb on + strand, within IAI47_19805at 187.323 kb on + strand, within IAI47_19805at 187.324 kb on - strand, within IAI47_19805at 187.324 kb on - strand, within IAI47_19805at 187.330 kb on - strand, within IAI47_19805at 187.330 kb on - strand, within IAI47_19805at 187.330 kb on - strand, within IAI47_19805at 187.330 kb on - strand, within IAI47_19805at 187.339 kb on + strand, within IAI47_19805at 187.340 kb on - strand, within IAI47_19805at 187.351 kb on - strand, within IAI47_19805at 187.373 kb on + strand, within IAI47_19805at 187.373 kb on + strand, within IAI47_19805at 187.374 kb on - strand, within IAI47_19805at 187.382 kb on + strand, within IAI47_19805at 187.382 kb on + strand, within IAI47_19805at 187.383 kb on - strand, within IAI47_19805at 187.436 kb on + strand, within IAI47_19805at 187.509 kb on + strand, within IAI47_19805at 187.509 kb on + strand, within IAI47_19805at 187.509 kb on + strand, within IAI47_19805at 187.509 kb on + strand, within IAI47_19805at 187.510 kb on - strand, within IAI47_19805at 187.510 kb on - strand, within IAI47_19805at 187.510 kb on - strand, within IAI47_19805at 187.531 kb on - strand, within IAI47_19805at 187.593 kb on + strand, within IAI47_19805at 187.699 kb on + strand, within IAI47_19805at 187.699 kb on + strand, within IAI47_19805at 187.700 kb on - strand, within IAI47_19805at 187.700 kb on - strand, within IAI47_19805at 187.784 kb on + strand, within IAI47_19805at 187.785 kb on - strand, within IAI47_19805at 187.823 kb on - strand, within IAI47_19805at 187.853 kb on + strand, within IAI47_19805at 187.854 kb on - strand, within IAI47_19805at 187.854 kb on - strand, within IAI47_19805at 187.854 kb on - strand, within IAI47_19805at 187.854 kb on - strand, within IAI47_19805at 187.858 kb on + strand, within IAI47_19805at 187.900 kb on - strandat 187.900 kb on - strandat 187.936 kb on - strandat 187.942 kb on + strandat 187.942 kb on + strandat 187.942 kb on + strandat 187.942 kb on + strandat 187.943 kb on - strandat 187.943 kb on - strandat 187.943 kb on - strandat 187.943 kb on - strandat 187.943 kb on - strandat 187.985 kb on + strandat 187.986 kb on - strandat 187.986 kb on - strandat 187.996 kb on - strandat 188.004 kb on - strandat 188.075 kb on + strandat 188.076 kb on - strandat 188.076 kb on - strandat 188.076 kb on - strandat 188.076 kb on - strandat 188.102 kb on + strandat 188.124 kb on - strand, within IAI47_19810at 188.135 kb on + strand, within IAI47_19810at 188.135 kb on + strand, within IAI47_19810at 188.135 kb on + strand, within IAI47_19810at 188.136 kb on - strand, within IAI47_19810at 188.136 kb on - strand, within IAI47_19810at 188.136 kb on - strand, within IAI47_19810

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
remove
185,156 + IAI47_19795 0.32 +0.5
185,244 + IAI47_19795 0.38 -1.6
185,244 + IAI47_19795 0.38 -2.1
185,244 + IAI47_19795 0.38 +2.9
185,244 + IAI47_19795 0.38 -1.0
185,244 + IAI47_19795 0.38 -1.5
185,244 + IAI47_19795 0.38 +1.0
185,368 - IAI47_19795 0.47 -1.6
185,368 - IAI47_19795 0.47 -2.1
185,447 + IAI47_19795 0.52 +1.6
185,447 + IAI47_19795 0.52 -1.6
185,448 - IAI47_19795 0.52 +1.5
185,448 - IAI47_19795 0.52 +0.6
185,448 - IAI47_19795 0.52 -0.8
185,448 - IAI47_19795 0.52 -0.2
185,448 - IAI47_19795 0.52 -0.6
185,448 - IAI47_19795 0.52 -2.2
185,448 - IAI47_19795 0.52 +1.5
185,448 - IAI47_19795 0.52 +1.5
185,448 - IAI47_19795 0.52 -0.8
185,449 + IAI47_19795 0.52 -0.6
185,449 + IAI47_19795 0.52 -1.3
185,449 + IAI47_19795 0.52 +1.3
185,450 - IAI47_19795 0.52 -2.3
185,476 + IAI47_19795 0.54 -0.5
185,514 - IAI47_19795 0.57 +2.8
185,514 - IAI47_19795 0.57 +0.8
185,532 + IAI47_19795 0.58 -0.4
185,533 - IAI47_19795 0.58 -1.3
185,623 + IAI47_19795 0.64 +0.8
185,624 - IAI47_19795 0.64 -0.8
185,686 + IAI47_19795 0.69 +0.1
185,686 + IAI47_19795 0.69 +1.4
185,686 + IAI47_19795 0.69 -1.1
185,687 - IAI47_19795 0.69 -2.6
185,687 - IAI47_19795 0.69 +0.2
185,711 - IAI47_19795 0.70 +0.4
185,711 - IAI47_19795 0.70 -1.0
185,711 - IAI47_19795 0.70 +0.8
185,766 + IAI47_19795 0.74 +0.2
185,767 - IAI47_19795 0.74 +1.2
185,767 - IAI47_19795 0.74 +0.5
185,821 + IAI47_19795 0.78 -1.3
185,867 + IAI47_19795 0.81 -0.2
185,867 + IAI47_19795 0.81 -0.2
185,867 + IAI47_19795 0.81 +1.0
185,868 - IAI47_19795 0.81 -0.6
185,868 - IAI47_19795 0.81 -1.4
185,876 - IAI47_19795 0.82 +1.8
185,881 + IAI47_19795 0.82 -0.3
185,882 - IAI47_19795 0.82 +0.3
185,961 + IAI47_19795 0.88 +1.7
185,962 - IAI47_19795 0.88 +1.0
185,962 - IAI47_19795 0.88 -0.2
185,962 - IAI47_19795 0.88 -2.3
185,962 - IAI47_19795 0.88 +0.3
186,137 + -0.2
186,138 - -1.8
186,140 + -2.3
186,140 + +1.3
186,168 + +1.4
186,169 - -0.5
186,320 + IAI47_19800 0.17 -1.8
186,320 + IAI47_19800 0.17 +1.8
186,323 - IAI47_19800 0.17 -0.8
186,451 + IAI47_19800 0.29 -0.1
186,452 - IAI47_19800 0.30 -2.6
186,452 - IAI47_19800 0.30 +1.5
186,517 - IAI47_19800 0.36 -0.6
186,529 + IAI47_19800 0.37 -0.6
186,604 + IAI47_19800 0.45 -2.1
186,605 - IAI47_19800 0.45 -0.2
186,702 + IAI47_19800 0.54 +0.8
186,740 + IAI47_19800 0.58 -0.3
186,775 + IAI47_19800 0.61 +0.2
186,781 + IAI47_19800 0.62 +0.7
186,796 + IAI47_19800 0.64 +0.2
186,797 - IAI47_19800 0.64 +1.4
186,812 - IAI47_19800 0.65 +0.5
186,812 - IAI47_19800 0.65 +1.1
186,832 + IAI47_19800 0.67 +1.1
186,838 + IAI47_19800 0.68 -0.5
186,838 + IAI47_19800 0.68 +0.8
186,839 - IAI47_19800 0.68 -1.0
186,839 - IAI47_19800 0.68 -0.5
186,839 - IAI47_19800 0.68 +1.5
186,840 + IAI47_19800 0.68 -0.5
186,840 + IAI47_19800 0.68 +0.6
186,841 - IAI47_19800 0.68 +0.8
186,866 + IAI47_19800 0.70 +2.4
186,866 + IAI47_19800 0.70 -0.6
186,866 + IAI47_19800 0.70 -1.0
186,867 - IAI47_19800 0.71 -2.9
186,867 - IAI47_19800 0.71 +1.0
186,872 + IAI47_19800 0.71 -0.5
186,872 + IAI47_19800 0.71 -1.2
186,950 + IAI47_19800 0.79 +0.7
186,951 - IAI47_19800 0.79 +3.0
186,976 + IAI47_19800 0.81 -0.0
186,977 - IAI47_19800 0.81 +0.5
187,013 + IAI47_19800 0.85 -0.8
187,013 + IAI47_19800 0.85 +2.1
187,013 + IAI47_19800 0.85 -0.2
187,013 + IAI47_19800 0.85 -0.2
187,013 + IAI47_19800 0.85 +0.6
187,013 + IAI47_19800 0.85 -2.5
187,014 - IAI47_19800 0.85 +0.3
187,014 - IAI47_19800 0.85 +1.4
187,014 - IAI47_19800 0.85 +0.3
187,014 - IAI47_19800 0.85 +0.9
187,014 - IAI47_19800 0.85 +2.5
187,014 - IAI47_19800 0.85 -1.2
187,014 - IAI47_19800 0.85 -0.7
187,128 + -1.0
187,203 - +1.8
187,203 - +0.6
187,203 - +2.1
187,221 + -1.0
187,290 + IAI47_19805 0.16 -0.8
187,323 + IAI47_19805 0.20 -1.3
187,324 - IAI47_19805 0.20 -1.2
187,324 - IAI47_19805 0.20 -1.9
187,330 - IAI47_19805 0.21 +0.8
187,330 - IAI47_19805 0.21 -1.6
187,330 - IAI47_19805 0.21 +0.0
187,330 - IAI47_19805 0.21 -0.2
187,339 + IAI47_19805 0.22 +0.8
187,340 - IAI47_19805 0.22 +0.4
187,351 - IAI47_19805 0.24 +1.8
187,373 + IAI47_19805 0.27 -2.6
187,373 + IAI47_19805 0.27 -0.5
187,374 - IAI47_19805 0.27 -0.6
187,382 + IAI47_19805 0.28 +0.7
187,382 + IAI47_19805 0.28 -0.2
187,383 - IAI47_19805 0.28 +1.1
187,436 + IAI47_19805 0.35 -1.5
187,509 + IAI47_19805 0.44 -0.4
187,509 + IAI47_19805 0.44 -1.9
187,509 + IAI47_19805 0.44 -0.9
187,509 + IAI47_19805 0.44 +0.2
187,510 - IAI47_19805 0.44 +1.3
187,510 - IAI47_19805 0.44 +1.2
187,510 - IAI47_19805 0.44 -2.3
187,531 - IAI47_19805 0.47 -3.0
187,593 + IAI47_19805 0.55 +0.2
187,699 + IAI47_19805 0.68 +0.8
187,699 + IAI47_19805 0.68 -1.0
187,700 - IAI47_19805 0.69 +1.0
187,700 - IAI47_19805 0.69 -2.9
187,784 + IAI47_19805 0.79 -0.2
187,785 - IAI47_19805 0.79 +1.9
187,823 - IAI47_19805 0.84 -2.4
187,853 + IAI47_19805 0.88 +0.0
187,854 - IAI47_19805 0.88 -1.0
187,854 - IAI47_19805 0.88 +1.3
187,854 - IAI47_19805 0.88 -1.5
187,854 - IAI47_19805 0.88 +1.4
187,858 + IAI47_19805 0.89 -0.9
187,900 - +0.8
187,900 - -0.3
187,936 - -2.1
187,942 + +0.8
187,942 + -0.3
187,942 + +1.5
187,942 + +0.9
187,943 - +1.7
187,943 - +1.4
187,943 - -1.3
187,943 - -1.0
187,943 - +0.1
187,985 + -1.8
187,986 - -1.8
187,986 - +0.8
187,996 - -0.2
188,004 - -0.5
188,075 + -1.0
188,076 - +1.6
188,076 - -2.1
188,076 - +1.6
188,076 - +2.1
188,102 + +2.4
188,124 - IAI47_19810 0.10 +0.4
188,135 + IAI47_19810 0.11 +1.8
188,135 + IAI47_19810 0.11 -1.3
188,135 + IAI47_19810 0.11 +0.7
188,136 - IAI47_19810 0.11 +2.7
188,136 - IAI47_19810 0.11 -1.2
188,136 - IAI47_19810 0.11 +3.4

Or see this region's nucleotide sequence