Strain Fitness in Pantoea sp. MT58 around IAI47_16470

Experiment: Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
3,488,555	+		IAI47_16465	0.47	+1.4
3,488,556	-		IAI47_16465	0.47	+0.1
3,488,638	-		IAI47_16465	0.53	-0.8
3,488,638	-		IAI47_16465	0.53	+1.0
3,488,638	-		IAI47_16465	0.53	+1.3
3,488,640	-		IAI47_16465	0.53	+0.9
3,488,640	-		IAI47_16465	0.53	-0.0
3,488,658	+		IAI47_16465	0.54	+0.9
3,488,658	+		IAI47_16465	0.54	+1.3
3,488,658	+		IAI47_16465	0.54	+0.2
3,488,659	-		IAI47_16465	0.54	-0.2
3,488,735	+		IAI47_16465	0.59	+0.6
3,488,736	-		IAI47_16465	0.59	-0.8
3,488,736	-		IAI47_16465	0.59	-1.0
3,488,748	+		IAI47_16465	0.60	-1.2
3,488,748	+		IAI47_16465	0.60	+0.6
3,488,749	-		IAI47_16465	0.60	+0.1
3,488,749	-		IAI47_16465	0.60	-1.3
3,488,766	+		IAI47_16465	0.61	+0.3
3,488,767	-		IAI47_16465	0.61	+2.0
3,488,767	-		IAI47_16465	0.61	+2.4
3,488,767	-		IAI47_16465	0.61	+1.9
3,488,819	+		IAI47_16465	0.65	-3.1
3,488,819	+		IAI47_16465	0.65	-0.8
3,488,820	-		IAI47_16465	0.65	-0.5
3,488,823	+		IAI47_16465	0.65	-2.3
3,488,823	+		IAI47_16465	0.65	+1.9
3,488,823	+		IAI47_16465	0.65	-0.2
3,488,823	+		IAI47_16465	0.65	+0.2
3,488,823	+		IAI47_16465	0.65	+0.5
3,488,823	+		IAI47_16465	0.65	+0.7
3,488,824	-		IAI47_16465	0.65	-0.1
3,488,824	-		IAI47_16465	0.65	+1.0
3,488,824	-		IAI47_16465	0.65	+0.1
3,488,824	-		IAI47_16465	0.65	-0.8
3,488,861	-		IAI47_16465	0.68	+0.3
3,488,861	-		IAI47_16465	0.68	-0.5
3,488,864	+		IAI47_16465	0.68	+1.3
3,488,864	+		IAI47_16465	0.68	-0.8
3,488,864	+		IAI47_16465	0.68	-0.6
3,488,873	+		IAI47_16465	0.69	+1.4
3,488,873	+		IAI47_16465	0.69	+0.3
3,488,874	-		IAI47_16465	0.69	+1.2
3,488,874	-		IAI47_16465	0.69	-0.6
3,488,874	-		IAI47_16465	0.69	+0.5
3,488,874	-		IAI47_16465	0.69	+0.5
3,488,874	-		IAI47_16465	0.69	-1.5
3,488,972	+		IAI47_16465	0.75	-1.0
3,488,973	-		IAI47_16465	0.76	-0.9
3,488,989	-		IAI47_16465	0.77	-1.1
3,489,021	+		IAI47_16465	0.79	-3.2
3,489,022	-		IAI47_16465	0.79	+0.1
3,489,022	-		IAI47_16465	0.79	+2.7
3,489,040	+		IAI47_16465	0.80	-1.4
3,489,041	-		IAI47_16465	0.80	+2.6
3,489,041	-		IAI47_16465	0.80	-0.0
3,489,096	-		IAI47_16465	0.84	-0.1
3,489,202	+				-1.0
3,489,204	+				+0.2
3,489,204	+				+1.6
3,489,204	+				+0.7
3,489,204	+				+2.5
3,489,205	-				-0.6
3,489,205	-				+0.0
3,489,205	-				-2.5
3,489,205	-				-0.1
3,489,236	+				+1.9
3,489,237	-				-2.2
3,489,243	+				-2.8
3,489,248	+				+2.0
3,489,248	+				-0.9
3,489,254	+				-1.1
3,489,254	+				+1.0
3,489,254	+				+0.0
3,489,255	-				+1.4
3,489,269	+				+2.5
3,489,269	+				-0.2
3,489,270	-				-1.2
3,489,270	-				-0.7
3,489,270	-				-0.2
3,489,289	+				-2.5
3,489,289	+				-0.4
3,489,289	+				+1.7
3,489,290	-				-0.5
3,489,290	-				+0.4
3,489,290	-				+0.8
3,489,507	+				-0.1
3,489,507	+				+0.0
3,489,507	+				+1.0
3,489,507	+				+0.4
3,489,528	+				+0.2
3,489,530	-				-0.6
3,489,540	+				-2.2
3,489,540	+				+1.4
3,489,541	-				+0.9
3,489,571	-		IAI47_16470	0.12	+0.4
3,489,573	+		IAI47_16470	0.12	-0.4
3,489,573	+		IAI47_16470	0.12	-0.3
3,489,573	+		IAI47_16470	0.12	+1.1
3,489,573	+		IAI47_16470	0.12	+0.4
3,489,573	+		IAI47_16470	0.12	+0.5
3,489,573	+		IAI47_16470	0.12	-1.7
3,489,573	+		IAI47_16470	0.12	+1.7
3,489,574	-		IAI47_16470	0.12	+2.8
3,489,574	-		IAI47_16470	0.12	+1.7
3,489,574	-		IAI47_16470	0.12	+0.6
3,489,574	-		IAI47_16470	0.12	+2.1
3,489,574	-		IAI47_16470	0.12	+1.2
3,489,574	-		IAI47_16470	0.12	+0.6
3,489,574	-		IAI47_16470	0.12	-0.6
3,489,574	-		IAI47_16470	0.12	+1.0
3,489,581	+		IAI47_16470	0.14	+1.3
3,489,581	+		IAI47_16470	0.14	-1.8
3,489,581	+		IAI47_16470	0.14	+0.1
3,489,581	+		IAI47_16470	0.14	+1.0
3,489,581	+		IAI47_16470	0.14	-0.8
3,489,581	+		IAI47_16470	0.14	+0.4
3,489,581	+		IAI47_16470	0.14	+0.4
3,489,582	-		IAI47_16470	0.14	-0.3
3,489,582	-		IAI47_16470	0.14	+0.6
3,489,594	+		IAI47_16470	0.16	-0.1
3,489,594	+		IAI47_16470	0.16	-1.4
3,489,594	+		IAI47_16470	0.16	+1.0
3,489,594	+		IAI47_16470	0.16	+0.4
3,489,595	-		IAI47_16470	0.16	+1.7
3,489,595	-		IAI47_16470	0.16	+2.1
3,489,595	-		IAI47_16470	0.16	-1.2
3,489,595	-		IAI47_16470	0.16	-2.8
3,489,595	-		IAI47_16470	0.16	-0.4
3,489,595	-		IAI47_16470	0.16	+0.2
3,489,596	+		IAI47_16470	0.16	+0.1
3,489,596	+		IAI47_16470	0.16	-0.4
3,489,596	+		IAI47_16470	0.16	-2.5
3,489,596	+		IAI47_16470	0.16	+2.3
3,489,597	-		IAI47_16470	0.17	+0.1
3,489,597	-		IAI47_16470	0.17	-0.1
3,489,597	-		IAI47_16470	0.17	+1.2
3,489,597	-		IAI47_16470	0.17	-1.3
3,489,597	-		IAI47_16470	0.17	+0.5
3,489,609	+		IAI47_16470	0.19	+0.1
3,489,610	-		IAI47_16470	0.19	+0.3
3,489,610	-		IAI47_16470	0.19	+0.6
3,489,610	-		IAI47_16470	0.19	-1.6
3,489,634	-		IAI47_16470	0.24	+0.5
3,489,634	-		IAI47_16470	0.24	+0.9
3,489,659	+		IAI47_16470	0.29	+0.9
3,489,660	-		IAI47_16470	0.29	+3.7
3,489,660	-		IAI47_16470	0.29	+1.6
3,489,666	+		IAI47_16470	0.30	+1.4
3,489,666	+		IAI47_16470	0.30	+0.2
3,489,674	+		IAI47_16470	0.32	+0.0
3,489,674	+		IAI47_16470	0.32	-1.4
3,489,674	+		IAI47_16470	0.32	-1.1
3,489,674	+		IAI47_16470	0.32	-1.4
3,489,675	-		IAI47_16470	0.32	+0.9
3,489,675	-		IAI47_16470	0.32	-0.1
3,489,675	-		IAI47_16470	0.32	+0.6
3,489,675	-		IAI47_16470	0.32	-0.0
3,489,702	+		IAI47_16470	0.37	-0.8
3,489,703	-		IAI47_16470	0.37	-1.1
3,489,703	-		IAI47_16470	0.37	-0.6
3,489,704	+		IAI47_16470	0.37	+0.2
3,489,704	+		IAI47_16470	0.37	+2.1
3,489,705	-		IAI47_16470	0.38	+1.0
3,489,740	+		IAI47_16470	0.44	-0.5
3,489,740	+		IAI47_16470	0.44	-0.6
3,489,740	+		IAI47_16470	0.44	-1.6
3,489,741	-		IAI47_16470	0.45	+0.0
3,489,741	-		IAI47_16470	0.45	-0.1
3,489,741	-		IAI47_16470	0.45	+1.4
3,489,741	-		IAI47_16470	0.45	+1.7
3,489,741	-		IAI47_16470	0.45	+2.0
3,489,744	+		IAI47_16470	0.45	+1.5
3,489,745	-		IAI47_16470	0.45	+0.2
3,489,804	+		IAI47_16470	0.57	-2.0
3,489,804	+		IAI47_16470	0.57	-0.3
3,489,805	-		IAI47_16470	0.57	+0.2
3,489,805	-		IAI47_16470	0.57	+0.5
3,489,805	-		IAI47_16470	0.57	+1.2
3,489,805	-		IAI47_16470	0.57	+1.5
3,489,932	+		IAI47_16470	0.82	+0.6
3,490,000	+				-1.8
3,490,001	-				-0.0
3,490,026	+				-1.6
3,490,026	+				+0.1
3,490,026	+				-2.5
3,490,027	-				-0.8
3,490,086	+				-1.6
3,490,087	-				-1.4
3,490,091	+				-1.2
3,490,097	+				+0.4
3,490,097	+				+0.6
3,490,097	+				-0.6
3,490,097	+				-2.7
3,490,097	+				+0.5
3,490,097	+				+1.1
3,490,097	+				-2.3
3,490,097	+				-1.1
3,490,097	+				-0.5
3,490,097	+				-0.3
3,490,098	-				-1.1
3,490,098	-				+0.2
3,490,098	-				-1.5
3,490,098	-				+0.1
3,490,098	-				+2.0
3,490,098	-				-0.8
3,490,098	-				-0.4
3,490,098	-				-2.9
3,490,098	-				-1.6
3,490,098	-				-0.6
3,490,103	+				-0.3
3,490,104	-				-1.3
3,490,128	+				+0.6
3,490,128	+				+0.6
3,490,128	+				-1.7
3,490,129	-				+0.2
3,490,171	-				-1.1
3,490,171	-				+0.1
3,490,207	+				-0.6
3,490,211	+				+3.6
3,490,211	+				+0.9
3,490,211	+				+0.2
3,490,211	+				-1.6
3,490,212	-				-0.1
3,490,212	-				+1.7
3,490,212	-				+0.2
3,490,225	-				+0.5
3,490,225	-				-1.8
3,490,261	-				+0.0
3,490,266	+				-0.5
3,490,266	+				+1.3
3,490,266	+				-2.2
3,490,267	-				+0.7
3,490,267	-				-0.9
3,490,267	-				+1.6
3,490,271	+				-0.0
3,490,272	-				+0.3
3,490,279	-		IAI47_16475	0.10	+0.1
3,490,299	+		IAI47_16475	0.12	-0.7
3,490,299	+		IAI47_16475	0.12	+0.6
3,490,300	-		IAI47_16475	0.12	-1.3
3,490,301	+		IAI47_16475	0.12	+1.5
3,490,301	+		IAI47_16475	0.12	-0.1
3,490,302	-		IAI47_16475	0.12	-0.2
3,490,302	-		IAI47_16475	0.12	-1.8
3,490,302	-		IAI47_16475	0.12	+1.1
3,490,302	-		IAI47_16475	0.12	+0.4
3,490,302	-		IAI47_16475	0.12	+0.0
3,490,313	+		IAI47_16475	0.13	+1.2
3,490,313	+		IAI47_16475	0.13	+0.4
3,490,314	-		IAI47_16475	0.13	+0.4
3,490,314	-		IAI47_16475	0.13	-1.6
3,490,314	-		IAI47_16475	0.13	+1.7
3,490,371	+		IAI47_16475	0.17	+0.7
3,490,382	+		IAI47_16475	0.18	-2.3
3,490,382	+		IAI47_16475	0.18	-1.1
3,490,404	+		IAI47_16475	0.20	+0.7
3,490,425	+		IAI47_16475	0.22	+0.8
3,490,426	-		IAI47_16475	0.22	+0.5
3,490,457	+		IAI47_16475	0.24	-2.2
3,490,457	+		IAI47_16475	0.24	+0.4
3,490,457	+		IAI47_16475	0.24	+1.4
3,490,457	+		IAI47_16475	0.24	-0.4
3,490,458	-		IAI47_16475	0.24	+2.9
3,490,458	-		IAI47_16475	0.24	-1.6
3,490,458	-		IAI47_16475	0.24	-1.6
3,490,458	-		IAI47_16475	0.24	+0.4
3,490,458	-		IAI47_16475	0.24	+0.9
3,490,458	-		IAI47_16475	0.24	-0.3
3,490,479	+		IAI47_16475	0.26	+0.7
3,490,479	+		IAI47_16475	0.26	-1.2
3,490,479	+		IAI47_16475	0.26	+0.2
3,490,479	+		IAI47_16475	0.26	-1.8
3,490,480	-		IAI47_16475	0.26	+0.9
3,490,480	-		IAI47_16475	0.26	+1.9
3,490,480	-		IAI47_16475	0.26	-0.8
3,490,480	-		IAI47_16475	0.26	+1.2
3,490,484	+		IAI47_16475	0.26	+0.9
3,490,484	+		IAI47_16475	0.26	-0.1
3,490,484	+		IAI47_16475	0.26	-0.8
3,490,485	-		IAI47_16475	0.26	-0.0
3,490,485	-		IAI47_16475	0.26	+1.6
3,490,595	+		IAI47_16475	0.35	+3.6
3,490,653	+		IAI47_16475	0.40	-1.3
3,490,653	+		IAI47_16475	0.40	-0.2
3,490,653	+		IAI47_16475	0.40	+0.7
3,490,653	+		IAI47_16475	0.40	+3.7
3,490,654	-		IAI47_16475	0.40	+0.7
3,490,654	-		IAI47_16475	0.40	+0.9
3,490,654	-		IAI47_16475	0.40	+4.4
3,490,654	-		IAI47_16475	0.40	+1.1
3,490,654	-		IAI47_16475	0.40	+1.7
3,490,654	-		IAI47_16475	0.40	-1.6
3,490,654	-		IAI47_16475	0.40	+0.0
3,490,654	-		IAI47_16475	0.40	-1.6
3,490,654	-		IAI47_16475	0.40	+0.2
3,490,654	-		IAI47_16475	0.40	+1.5
3,490,699	+		IAI47_16475	0.44	+1.9
3,490,699	+		IAI47_16475	0.44	-0.7
3,490,699	+		IAI47_16475	0.44	+2.1
3,490,699	+		IAI47_16475	0.44	+1.9
3,490,699	+		IAI47_16475	0.44	-0.9
3,490,699	+		IAI47_16475	0.44	+0.0
3,490,699	+		IAI47_16475	0.44	+0.4
3,490,700	-		IAI47_16475	0.44	-3.3
3,490,700	-		IAI47_16475	0.44	-0.3
3,490,700	-		IAI47_16475	0.44	+0.9
3,490,700	-		IAI47_16475	0.44	+0.5
3,490,700	-		IAI47_16475	0.44	+0.6
3,490,705	-		IAI47_16475	0.44	-0.2
3,490,705	-		IAI47_16475	0.44	+1.6
3,490,722	-		IAI47_16475	0.45	-0.9
3,490,736	+		IAI47_16475	0.46	-0.4
3,490,736	+		IAI47_16475	0.46	-1.1
3,490,736	+		IAI47_16475	0.46	-1.6
3,490,737	-		IAI47_16475	0.47	+0.9
3,490,737	-		IAI47_16475	0.47	+1.7
3,490,737	-		IAI47_16475	0.47	+1.1
3,490,737	-		IAI47_16475	0.47	-2.3
3,490,737	-		IAI47_16475	0.47	+0.2
3,490,778	+		IAI47_16475	0.50	-0.9
3,490,778	+		IAI47_16475	0.50	+2.6
3,490,779	-		IAI47_16475	0.50	-1.3
3,490,779	-		IAI47_16475	0.50	-1.3
3,490,779	-		IAI47_16475	0.50	-0.2
3,490,779	-		IAI47_16475	0.50	-0.7
3,490,779	-		IAI47_16475	0.50	+0.5
3,490,779	-		IAI47_16475	0.50	-1.8
3,490,836	-		IAI47_16475	0.54	+0.3
3,490,836	-		IAI47_16475	0.54	-0.8
3,490,870	-		IAI47_16475	0.57	-0.0
3,490,901	-		IAI47_16475	0.60	+0.4
3,490,901	-		IAI47_16475	0.60	-1.2
3,490,912	+		IAI47_16475	0.61	+0.3
3,490,912	+		IAI47_16475	0.61	-1.3
3,490,913	-		IAI47_16475	0.61	+0.0
3,490,938	+		IAI47_16475	0.63	+1.0
3,490,938	+		IAI47_16475	0.63	+0.3
3,490,938	+		IAI47_16475	0.63	+2.7
3,490,938	+		IAI47_16475	0.63	-2.6
3,490,939	-		IAI47_16475	0.63	+0.2
3,490,939	-		IAI47_16475	0.63	-0.6
3,490,974	+		IAI47_16475	0.65	+1.1
3,490,974	+		IAI47_16475	0.65	+0.3
3,490,974	+		IAI47_16475	0.65	-2.0
3,490,975	-		IAI47_16475	0.66	-2.4
3,490,992	+		IAI47_16475	0.67	-1.4
3,490,992	+		IAI47_16475	0.67	-0.1
3,490,992	+		IAI47_16475	0.67	-0.5
3,490,993	-		IAI47_16475	0.67	+1.8
3,490,993	-		IAI47_16475	0.67	-0.2
3,490,993	-		IAI47_16475	0.67	-1.6
3,491,014	-		IAI47_16475	0.69	+1.2