Strain Fitness in Pantoea sp. MT58 around IAI47_08925

Experiment: Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
1,885,569	+		IAI47_08920	0.32	+0.1
1,885,570	-		IAI47_08920	0.32	-1.6
1,885,571	+		IAI47_08920	0.32	+1.9
1,885,571	+		IAI47_08920	0.32	-0.2
1,885,571	+		IAI47_08920	0.32	-1.2
1,885,571	+		IAI47_08920	0.32	+1.6
1,885,571	+		IAI47_08920	0.32	+1.2
1,885,571	+		IAI47_08920	0.32	-1.8
1,885,571	+		IAI47_08920	0.32	+0.1
1,885,572	-		IAI47_08920	0.32	-0.0
1,885,572	-		IAI47_08920	0.32	-0.2
1,885,572	-		IAI47_08920	0.32	+0.3
1,885,592	+		IAI47_08920	0.33	-1.6
1,885,592	+		IAI47_08920	0.33	+2.1
1,885,592	+		IAI47_08920	0.33	-1.8
1,885,592	+		IAI47_08920	0.33	-2.3
1,885,592	+		IAI47_08920	0.33	+0.3
1,885,593	-		IAI47_08920	0.34	+0.3
1,885,593	-		IAI47_08920	0.34	-1.9
1,885,613	+		IAI47_08920	0.35	-0.7
1,885,614	-		IAI47_08920	0.35	-1.1
1,885,614	-		IAI47_08920	0.35	-1.7
1,885,614	-		IAI47_08920	0.35	-2.5
1,885,614	-		IAI47_08920	0.35	+0.1
1,885,614	-		IAI47_08920	0.35	+0.5
1,885,614	-		IAI47_08920	0.35	+1.4
1,885,624	-		IAI47_08920	0.36	+1.3
1,885,624	-		IAI47_08920	0.36	+2.3
1,885,624	-		IAI47_08920	0.36	+0.3
1,885,625	+		IAI47_08920	0.36	-1.6
1,885,625	+		IAI47_08920	0.36	+2.5
1,885,625	+		IAI47_08920	0.36	+2.3
1,885,625	+		IAI47_08920	0.36	+2.4
1,885,625	+		IAI47_08920	0.36	+1.1
1,885,625	+		IAI47_08920	0.36	+0.6
1,885,625	+		IAI47_08920	0.36	-0.5
1,885,625	+		IAI47_08920	0.36	+1.2
1,885,625	+		IAI47_08920	0.36	+1.3
1,885,625	+		IAI47_08920	0.36	+0.3
1,885,626	-		IAI47_08920	0.36	-1.4
1,885,626	-		IAI47_08920	0.36	+2.4
1,885,626	-		IAI47_08920	0.36	-0.1
1,885,626	-		IAI47_08920	0.36	+1.9
1,885,626	-		IAI47_08920	0.36	+0.6
1,885,626	-		IAI47_08920	0.36	+1.1
1,885,626	-		IAI47_08920	0.36	-1.1
1,885,626	-		IAI47_08920	0.36	-0.3
1,885,626	-		IAI47_08920	0.36	-0.7
1,885,626	-		IAI47_08920	0.36	-0.1
1,885,626	-		IAI47_08920	0.36	-0.4
1,885,626	-		IAI47_08920	0.36	-0.1
1,885,626	-		IAI47_08920	0.36	-2.0
1,885,641	+		IAI47_08920	0.37	-2.5
1,885,807	+		IAI47_08920	0.50	-1.7
1,885,884	+		IAI47_08920	0.56	-0.8
1,885,884	+		IAI47_08920	0.56	-0.9
1,885,885	-		IAI47_08920	0.56	+1.2
1,885,933	+		IAI47_08920	0.60	-1.8
1,885,954	-		IAI47_08920	0.62	+1.1
1,885,971	+		IAI47_08920	0.63	+2.0
1,885,972	-		IAI47_08920	0.63	+0.4
1,885,998	+		IAI47_08920	0.65	-1.4
1,885,998	+		IAI47_08920	0.65	-1.3
1,885,998	+		IAI47_08920	0.65	-0.1
1,885,998	+		IAI47_08920	0.65	-0.5
1,885,998	+		IAI47_08920	0.65	+0.2
1,885,998	+		IAI47_08920	0.65	-2.1
1,885,998	+		IAI47_08920	0.65	-0.2
1,885,998	+		IAI47_08920	0.65	+1.2
1,885,998	+		IAI47_08920	0.65	+0.1
1,885,998	+		IAI47_08920	0.65	-2.6
1,885,999	-		IAI47_08920	0.65	-0.7
1,885,999	-		IAI47_08920	0.65	+0.3
1,885,999	-		IAI47_08920	0.65	-3.4
1,886,000	+		IAI47_08920	0.65	-1.4
1,886,000	+		IAI47_08920	0.65	-0.2
1,886,000	+		IAI47_08920	0.65	-0.6
1,886,000	+		IAI47_08920	0.65	+1.9
1,886,000	+		IAI47_08920	0.65	-2.0
1,886,001	-		IAI47_08920	0.66	-2.3
1,886,001	-		IAI47_08920	0.66	+1.5
1,886,001	-		IAI47_08920	0.66	-0.4
1,886,001	-		IAI47_08920	0.66	+0.6
1,886,001	-		IAI47_08920	0.66	+2.5
1,886,001	-		IAI47_08920	0.66	-1.3
1,886,001	-		IAI47_08920	0.66	+0.1
1,886,038	-		IAI47_08920	0.68	+1.9
1,886,072	+		IAI47_08920	0.71	-2.2
1,886,073	-		IAI47_08920	0.71	-2.2
1,886,073	-		IAI47_08920	0.71	+0.0
1,886,274	+		IAI47_08920	0.87	-0.7
1,886,275	-		IAI47_08920	0.87	+1.1
1,886,278	+		IAI47_08920	0.87	-1.6
1,886,278	+		IAI47_08920	0.87	+0.6
1,886,278	+		IAI47_08920	0.87	+2.5
1,886,278	+		IAI47_08920	0.87	-0.7
1,886,278	+		IAI47_08920	0.87	-0.1
1,886,279	-		IAI47_08920	0.87	-0.1
1,886,279	-		IAI47_08920	0.87	+3.2
1,886,280	+		IAI47_08920	0.87	-2.3
1,886,280	+		IAI47_08920	0.87	+0.7
1,886,281	-		IAI47_08920	0.88	+0.8
1,886,281	-		IAI47_08920	0.88	-0.1
1,886,322	+				+0.7
1,886,322	+				-0.4
1,886,349	+				-0.1
1,886,361	+				-0.7
1,886,361	+				-0.7
1,886,361	+				-0.1
1,886,361	+				+5.2
1,886,362	-				+1.7
1,886,362	-				+1.9
1,886,362	-				-1.6
1,886,362	-				+1.8
1,886,362	-				-0.2
1,886,362	-				-0.1
1,886,363	+				-0.2
1,886,363	+				+0.8
1,886,363	+				-1.9
1,886,364	-				-0.9
1,886,406	+				-0.8
1,886,406	+				+0.9
1,886,407	-				+1.0
1,886,432	+				-0.3
1,886,432	+				+0.2
1,886,442	+				-0.4
1,886,442	+				+0.2
1,886,442	+				-0.1
1,886,442	+				-1.1
1,886,442	+				-0.0
1,886,442	+				+1.6
1,886,443	-				-1.4
1,886,455	+				+0.1
1,886,455	+				-1.1
1,886,456	-				-1.3
1,886,462	+				-1.8
1,886,462	+				+0.9
1,886,462	+				+2.7
1,886,462	+				+0.8
1,886,462	+				-2.7
1,886,462	+				+2.5
1,886,462	+				+0.7
1,886,462	+				+0.9
1,886,462	+				-0.1
1,886,462	+				+0.4
1,886,463	-				-1.5
1,886,463	-				+2.9
1,886,463	-				+1.4
1,886,463	-				+1.5
1,886,463	-				+1.6
1,886,463	-				+4.1
1,886,505	+				-0.1
1,886,517	+				+0.0
1,886,517	+				+2.2
1,886,517	+				-1.6
1,886,517	+				-0.8
1,886,517	+				+0.3
1,886,517	+				+1.2
1,886,517	+				+1.6
1,886,517	+				+0.9
1,886,518	-				+0.7
1,886,518	-				-0.9
1,886,518	-				+0.6
1,886,518	-				+2.8
1,886,518	-				+0.5
1,886,518	-				-0.4
1,886,518	-				+0.3
1,886,524	-				-1.1
1,886,536	+				-0.1
1,886,550	+				+1.2
1,886,550	+				+0.3
1,886,551	-				+1.5
1,886,551	-				+0.5
1,886,551	-				+0.7
1,886,586	+				-0.1
1,886,654	-				+1.1
1,886,675	+				-1.6
1,886,675	+				-1.3
1,886,676	-				-1.6
1,886,676	-				+1.3
1,886,720	+		IAI47_08925	0.10	-1.3
1,886,721	-		IAI47_08925	0.10	-0.7
1,886,721	-		IAI47_08925	0.10	+3.2
1,886,758	+		IAI47_08925	0.12	+0.5
1,886,759	-		IAI47_08925	0.12	-0.4
1,886,759	-		IAI47_08925	0.12	+0.9
1,886,759	-		IAI47_08925	0.12	+3.2
1,886,759	-		IAI47_08925	0.12	-1.0
1,886,761	+		IAI47_08925	0.12	+0.6
1,886,761	+		IAI47_08925	0.12	-2.1
1,886,761	+		IAI47_08925	0.12	-0.1
1,886,761	+		IAI47_08925	0.12	-0.2
1,886,761	+		IAI47_08925	0.12	-0.4
1,886,761	+		IAI47_08925	0.12	+0.3
1,886,761	+		IAI47_08925	0.12	+0.3
1,886,762	-		IAI47_08925	0.12	-2.2
1,886,762	-		IAI47_08925	0.12	+1.5
1,886,801	-		IAI47_08925	0.14	-0.4
1,886,818	+		IAI47_08925	0.15	+0.9
1,886,905	-		IAI47_08925	0.20	-1.4
1,886,934	+		IAI47_08925	0.21	-1.3
1,886,934	+		IAI47_08925	0.21	+2.0
1,886,934	+		IAI47_08925	0.21	-1.2
1,886,934	+		IAI47_08925	0.21	+0.5
1,886,934	+		IAI47_08925	0.21	+0.3
1,886,935	-		IAI47_08925	0.21	+1.9
1,886,935	-		IAI47_08925	0.21	-1.1
1,886,943	+		IAI47_08925	0.22	-0.7
1,886,944	-		IAI47_08925	0.22	-1.7
1,886,967	+		IAI47_08925	0.23	+0.3
1,886,976	+		IAI47_08925	0.23	+1.6
1,886,976	+		IAI47_08925	0.23	+1.8
1,886,977	-		IAI47_08925	0.23	+0.5
1,886,989	-		IAI47_08925	0.24	+0.9
1,887,024	+		IAI47_08925	0.26	-0.5
1,887,024	+		IAI47_08925	0.26	-2.2
1,887,025	-		IAI47_08925	0.26	+0.9
1,887,029	-		IAI47_08925	0.26	+1.7
1,887,040	-		IAI47_08925	0.27	-0.4
1,887,046	+		IAI47_08925	0.27	+1.9
1,887,046	+		IAI47_08925	0.27	+0.8
1,887,060	+		IAI47_08925	0.28	-0.4
1,887,061	-		IAI47_08925	0.28	-0.6
1,887,117	+		IAI47_08925	0.31	-2.3
1,887,117	+		IAI47_08925	0.31	+0.6
1,887,117	+		IAI47_08925	0.31	+3.5
1,887,117	+		IAI47_08925	0.31	-2.3
1,887,117	+		IAI47_08925	0.31	-0.1
1,887,118	-		IAI47_08925	0.31	+2.9
1,887,118	-		IAI47_08925	0.31	+1.0
1,887,118	-		IAI47_08925	0.31	+0.7
1,887,118	-		IAI47_08925	0.31	+2.4
1,887,118	-		IAI47_08925	0.31	-0.7
1,887,118	-		IAI47_08925	0.31	-0.6
1,887,118	-		IAI47_08925	0.31	+1.0
1,887,118	-		IAI47_08925	0.31	+0.3
1,887,163	+		IAI47_08925	0.33	+2.3
1,887,164	-		IAI47_08925	0.33	-0.4
1,887,164	-		IAI47_08925	0.33	-1.3
1,887,184	+		IAI47_08925	0.34	-1.7
1,887,184	+		IAI47_08925	0.34	-1.4
1,887,234	+		IAI47_08925	0.37	-0.1
1,887,234	+		IAI47_08925	0.37	+0.1
1,887,235	-		IAI47_08925	0.37	-2.4
1,887,243	+		IAI47_08925	0.37	+0.3
1,887,243	+		IAI47_08925	0.37	-0.8
1,887,297	+		IAI47_08925	0.40	-2.6
1,887,297	+		IAI47_08925	0.40	-0.1
1,887,297	+		IAI47_08925	0.40	-0.7
1,887,298	-		IAI47_08925	0.40	-0.4
1,887,298	-		IAI47_08925	0.40	-0.4
1,887,298	-		IAI47_08925	0.40	+1.5
1,887,315	+		IAI47_08925	0.41	-1.1
1,887,315	+		IAI47_08925	0.41	-1.0
1,887,316	-		IAI47_08925	0.41	-0.7
1,887,319	+		IAI47_08925	0.41	-1.3
1,887,319	+		IAI47_08925	0.41	-2.3
1,887,320	-		IAI47_08925	0.41	+0.7
1,887,320	-		IAI47_08925	0.41	-2.2
1,887,422	+		IAI47_08925	0.46	+0.1
1,887,435	+		IAI47_08925	0.47	+1.9
1,887,435	+		IAI47_08925	0.47	-0.3
1,887,485	-		IAI47_08925	0.50	+0.3
1,887,486	+		IAI47_08925	0.50	-0.1
1,887,486	+		IAI47_08925	0.50	-0.4
1,887,486	+		IAI47_08925	0.50	-0.9
1,887,486	+		IAI47_08925	0.50	-0.0
1,887,486	+		IAI47_08925	0.50	-0.4
1,887,487	-		IAI47_08925	0.50	-2.5
1,887,487	-		IAI47_08925	0.50	+0.5
1,887,487	-		IAI47_08925	0.50	+0.1
1,887,487	-		IAI47_08925	0.50	-0.1
1,887,487	-		IAI47_08925	0.50	+0.8
1,887,487	-		IAI47_08925	0.50	-0.4
1,887,511	+		IAI47_08925	0.51	+0.9
1,887,511	+		IAI47_08925	0.51	-2.3
1,887,511	+		IAI47_08925	0.51	+0.9
1,887,511	+		IAI47_08925	0.51	-0.1
1,887,511	+		IAI47_08925	0.51	-0.1
1,887,512	-		IAI47_08925	0.51	-1.1
1,887,512	-		IAI47_08925	0.51	-1.4
1,887,512	-		IAI47_08925	0.51	-2.6
1,887,512	-		IAI47_08925	0.51	-0.1
1,887,565	+		IAI47_08925	0.54	+0.1
1,887,565	+		IAI47_08925	0.54	-0.4
1,887,565	+		IAI47_08925	0.54	+1.0
1,887,566	-		IAI47_08925	0.54	-2.3
1,887,566	-		IAI47_08925	0.54	+1.1
1,887,566	-		IAI47_08925	0.54	+2.9
1,887,566	-		IAI47_08925	0.54	+0.1
1,887,609	+		IAI47_08925	0.56	+0.9
1,887,609	+		IAI47_08925	0.56	+0.3
1,887,610	-		IAI47_08925	0.56	+2.2
1,887,610	-				+2.5
1,887,610	-		IAI47_08925	0.56	-0.4
1,887,610	-		IAI47_08925	0.56	+1.1
1,887,636	-		IAI47_08925	0.57	+0.0
1,887,636	-		IAI47_08925	0.57	-0.7
1,887,652	+		IAI47_08925	0.58	+0.1
1,887,652	+		IAI47_08925	0.58	+1.3
1,887,653	-		IAI47_08925	0.58	+0.2
1,887,664	+		IAI47_08925	0.59	-1.0
1,887,664	+		IAI47_08925	0.59	-3.3
1,887,664	+		IAI47_08925	0.59	+0.2
1,887,664	+		IAI47_08925	0.59	-0.9
1,887,726	+		IAI47_08925	0.62	-0.7
1,887,726	+		IAI47_08925	0.62	-1.6
1,887,727	-		IAI47_08925	0.62	+2.5
1,887,796	+		IAI47_08925	0.66	+0.8
1,887,796	+		IAI47_08925	0.66	-1.4
1,887,796	+		IAI47_08925	0.66	-1.4
1,887,829	+		IAI47_08925	0.67	-1.7
1,887,830	-		IAI47_08925	0.67	+0.5
1,887,830	-		IAI47_08925	0.67	+1.9
1,887,889	+		IAI47_08925	0.70	-1.7
1,887,889	+		IAI47_08925	0.70	+2.5
1,887,890	-		IAI47_08925	0.71	+0.9
1,887,934	+		IAI47_08925	0.73	-0.9
1,887,934	+		IAI47_08925	0.73	-1.3
1,887,934	+		IAI47_08925	0.73	+0.3
1,887,934	+		IAI47_08925	0.73	+1.7
1,887,935	-		IAI47_08925	0.73	+0.7
1,887,935	-		IAI47_08925	0.73	-0.1
1,887,935	-		IAI47_08925	0.73	+0.7
1,887,935	-		IAI47_08925	0.73	+2.3
1,887,949	-		IAI47_08925	0.74	-0.7
1,887,966	+		IAI47_08925	0.74	-0.4
1,887,967	-		IAI47_08925	0.75	-0.1
1,888,029	-		IAI47_08925	0.78	-1.0
1,888,062	+		IAI47_08925	0.79	-0.8
1,888,062	+		IAI47_08925	0.79	-2.1
1,888,062	+		IAI47_08925	0.79	-1.9
1,888,062	+		IAI47_08925	0.79	+2.1
1,888,063	-		IAI47_08925	0.79	+1.0
1,888,063	-		IAI47_08925	0.79	-0.4
1,888,063	-		IAI47_08925	0.79	+0.9
1,888,063	-		IAI47_08925	0.79	-1.4
1,888,066	+		IAI47_08925	0.80	-0.6
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