Strain Fitness in Pantoea sp. MT58 around IAI47_05600

Experiment: Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
1,178,134	+				-0.3
1,178,134	+				+2.4
1,178,134	+				-0.9
1,178,134	+				-1.5
1,178,135	-				+0.4
1,178,135	-				+1.1
1,178,135	-				+0.1
1,178,146	-				-0.2
1,178,179	-				-0.9
1,178,188	+				+0.8
1,178,188	+				+0.4
1,178,240	+				+0.5
1,178,241	-				+0.1
1,178,246	+				+0.6
1,178,246	+				-1.9
1,178,247	-				-0.8
1,178,263	+				+3.0
1,178,277	-				+0.5
1,178,285	+				-1.9
1,178,306	+				-1.6
1,178,307	-				-0.4
1,178,311	+				-0.1
1,178,311	+				-0.5
1,178,311	+				-1.7
1,178,311	+				-3.5
1,178,311	+				-0.9
1,178,312	-				-2.4
1,178,312	-				-1.5
1,178,312	-				+1.5
1,178,312	-				-2.5
1,178,312	-				+3.3
1,178,312	-				-0.4
1,178,336	+				+0.5
1,178,414	+				+0.2
1,178,576	-		IAI47_05595	0.31	-2.4
1,178,576	-		IAI47_05595	0.31	+2.4
1,178,598	-		IAI47_05595	0.33	-1.5
1,178,648	+		IAI47_05595	0.40	+1.1
1,178,649	-		IAI47_05595	0.40	-0.5
1,178,651	+		IAI47_05595	0.40	+1.0
1,178,652	-		IAI47_05595	0.40	+1.7
1,178,652	-		IAI47_05595	0.40	-0.5
1,178,652	-		IAI47_05595	0.40	-0.3
1,178,652	-		IAI47_05595	0.40	-1.5
1,178,699	+		IAI47_05595	0.46	+0.9
1,178,700	-		IAI47_05595	0.47	-0.5
1,178,745	-		IAI47_05595	0.52	-0.9
1,178,766	+		IAI47_05595	0.55	+0.8
1,178,766	+		IAI47_05595	0.55	+0.1
1,178,767	-		IAI47_05595	0.55	-0.8
1,178,767	-		IAI47_05595	0.55	-2.5
1,178,771	+		IAI47_05595	0.56	-0.4
1,178,771	+		IAI47_05595	0.56	-2.1
1,178,771	+		IAI47_05595	0.56	-1.7
1,178,771	+		IAI47_05595	0.56	-0.6
1,178,771	+		IAI47_05595	0.56	-0.2
1,178,771	+		IAI47_05595	0.56	+0.9
1,178,772	-		IAI47_05595	0.56	-2.4
1,178,887	+		IAI47_05595	0.71	+1.7
1,178,888	-		IAI47_05595	0.71	-2.3
1,178,894	+		IAI47_05595	0.71	-0.6
1,178,894	+		IAI47_05595	0.71	-0.0
1,178,895	-		IAI47_05595	0.72	+2.3
1,178,957	+		IAI47_05595	0.79	-1.0
1,178,957	+		IAI47_05595	0.79	+1.0
1,178,957	+		IAI47_05595	0.79	+1.2
1,178,958	-		IAI47_05595	0.80	+0.4
1,178,958	-		IAI47_05595	0.80	-0.2
1,178,958	-		IAI47_05595	0.80	+0.3
1,178,978	+		IAI47_05595	0.82	+0.3
1,179,007	+		IAI47_05595	0.86	+0.7
1,179,008	-		IAI47_05595	0.86	-2.0
1,179,071	+				+2.0
1,179,071	+				+0.5
1,179,072	-				-1.1
1,179,114	+				-1.8
1,179,115	-				+0.5
1,179,115	-				-0.7
1,179,115	-				-0.1
1,179,120	+				+0.1
1,179,120	+				+1.5
1,179,121	-				+0.5
1,179,121	-				-0.3
1,179,153	-				-1.2
1,179,253	+		IAI47_05600	0.27	+0.2
1,179,253	+		IAI47_05600	0.27	+0.1
1,179,254	-		IAI47_05600	0.27	+1.5
1,179,254	-		IAI47_05600	0.27	-1.5
1,179,254	-		IAI47_05600	0.27	+1.9
1,179,254	-		IAI47_05600	0.27	-1.5
1,179,265	-		IAI47_05600	0.30	+1.6
1,179,333	+		IAI47_05600	0.45	+0.9
1,179,371	+		IAI47_05600	0.53	+2.1
1,179,387	+		IAI47_05600	0.57	-0.0
1,179,387	+		IAI47_05600	0.57	+1.4
1,179,387	+		IAI47_05600	0.57	-3.0
1,179,388	-		IAI47_05600	0.57	-2.0
1,179,426	+		IAI47_05600	0.65	+2.6
1,179,426	+		IAI47_05600	0.65	-0.3
1,179,427	-		IAI47_05600	0.66	+0.3
1,179,427	-		IAI47_05600	0.66	-1.0
1,179,427	-		IAI47_05600	0.66	+1.0
1,179,427	-		IAI47_05600	0.66	-2.5
1,179,427	-		IAI47_05600	0.66	+1.4
1,179,427	-		IAI47_05600	0.66	-1.2
1,179,453	+		IAI47_05600	0.71	-1.1
1,179,454	-		IAI47_05600	0.72	-2.1
1,179,468	+		IAI47_05600	0.75	-2.1
1,179,468	+		IAI47_05600	0.75	-2.2
1,179,468	+		IAI47_05600	0.75	+2.4
1,179,468	+		IAI47_05600	0.75	-2.1
1,179,469	-		IAI47_05600	0.75	-1.5
1,179,469	-				+2.7
1,179,469	-		IAI47_05600	0.75	+0.0
1,179,506	+		IAI47_05600	0.83	-1.1
1,179,506	+		IAI47_05600	0.83	+1.4
1,179,509	+		IAI47_05600	0.84	+0.3
1,179,509	+		IAI47_05600	0.84	-0.2
1,179,509	+		IAI47_05600	0.84	+1.8
1,179,560	+				+0.4
1,179,561	-				-1.4
1,179,561	-				-2.8
1,179,573	+				+0.1
1,179,609	+				+1.1
1,179,612	+				-0.4
1,179,612	+				+0.1
1,179,648	+				+1.2
1,179,648	+				-1.9
1,179,648	+				-0.3
1,179,649	-				-0.8
1,179,724	-		IAI47_05605	0.16	-1.6
1,179,724	-		IAI47_05605	0.16	+1.0
1,179,724	-		IAI47_05605	0.16	+0.2
1,179,789	-		IAI47_05605	0.24	+0.1
1,179,852	-		IAI47_05605	0.32	-1.3
1,179,984	+		IAI47_05605	0.49	+0.2
1,179,985	-		IAI47_05605	0.49	-0.6
1,179,985	-		IAI47_05605	0.49	-1.1
1,179,988	+		IAI47_05605	0.49	-0.8
1,179,988	+		IAI47_05605	0.49	+1.3
1,179,988	+		IAI47_05605	0.49	+1.6
1,179,988	+		IAI47_05605	0.49	+0.2
1,179,988	+		IAI47_05605	0.49	+1.2
1,179,988	+		IAI47_05605	0.49	-1.5
1,179,988	+		IAI47_05605	0.49	+0.7
1,179,988	+		IAI47_05605	0.49	+0.3
1,179,988	+				+1.7
1,179,988	+		IAI47_05605	0.49	+1.1
1,179,988	+		IAI47_05605	0.49	+0.9
1,179,988	+		IAI47_05605	0.49	-1.5
1,179,988	+		IAI47_05605	0.49	+2.3
1,179,988	+		IAI47_05605	0.49	+0.1
1,179,988	+		IAI47_05605	0.49	+3.0
1,179,988	+		IAI47_05605	0.49	-0.3
1,179,989	-		IAI47_05605	0.49	+0.9
1,179,989	-		IAI47_05605	0.49	-0.6
1,179,989	-		IAI47_05605	0.49	+0.7
1,179,989	-		IAI47_05605	0.49	+0.1
1,179,989	-		IAI47_05605	0.49	-0.9
1,179,989	-		IAI47_05605	0.49	+1.1
1,179,989	-		IAI47_05605	0.49	+0.5
1,179,989	-		IAI47_05605	0.49	-0.8
1,179,989	-		IAI47_05605	0.49	-1.6
1,179,989	-		IAI47_05605	0.49	+1.6
1,179,990	+		IAI47_05605	0.49	+0.1
1,179,991	-		IAI47_05605	0.49	+1.0
1,180,004	+		IAI47_05605	0.51	-0.8
1,180,005	-		IAI47_05605	0.51	+1.3
1,180,031	+		IAI47_05605	0.54	+1.6
1,180,056	+		IAI47_05605	0.57	+1.3
1,180,061	-		IAI47_05605	0.58	-1.7
1,180,083	+		IAI47_05605	0.61	-2.3
1,180,084	-		IAI47_05605	0.61	+1.3
1,180,084	-		IAI47_05605	0.61	-0.3
1,180,089	-		IAI47_05605	0.62	+0.7
1,180,095	+		IAI47_05605	0.62	-0.6
1,180,095	+		IAI47_05605	0.62	+0.4
1,180,095	+		IAI47_05605	0.62	-0.0
1,180,095	+		IAI47_05605	0.62	-1.5
1,180,096	-		IAI47_05605	0.62	-0.8
1,180,096	-		IAI47_05605	0.62	-0.6
1,180,100	+		IAI47_05605	0.63	+1.0
1,180,152	+		IAI47_05605	0.69	-0.5
1,180,153	-		IAI47_05605	0.70	-2.9
1,180,183	-		IAI47_05605	0.73	-0.8
1,180,263	+		IAI47_05605	0.83	-0.2
1,180,264	-		IAI47_05605	0.83	-0.8
1,180,321	+				+0.9
1,180,321	+				+2.7
1,180,321	+				-2.4
1,180,321	+				-2.4
1,180,321	+				+2.0
1,180,322	-				+0.4
1,180,322	-				-1.5
1,180,340	+				+1.7
1,180,340	+				+0.8
1,180,340	+				-0.8
1,180,340	+				+1.7
1,180,341	-				+4.1
1,180,367	+				+1.0
1,180,367	+				+1.1
1,180,367	+				+1.1
1,180,367	+				+1.5
1,180,368	-				+2.9
1,180,368	-				+0.1
1,180,371	+				+1.7
1,180,371	+				-2.1
1,180,372	-				+2.5
1,180,372	-				-1.8
1,180,372	-				+0.5
1,180,372	-				-1.7
1,180,396	+				-1.6
1,180,397	-				+2.1
1,180,412	-				-1.3
1,180,433	+				-3.2
1,180,520	+				+1.0
1,180,520	+				-2.0
1,180,520	+				-2.5
1,180,521	-				+0.6
1,180,521	-				-1.0
1,180,521	-				-2.5