Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS09150

Experiment: Cytidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS09145 and BWI76_RS09150 are separated by 28 nucleotidesBWI76_RS09150 and BWI76_RS09155 are separated by 125 nucleotides BWI76_RS09145: BWI76_RS09145 - serine-type D-Ala-D-Ala carboxypeptidase, at 1,931,960 to 1,933,162 _RS09145 BWI76_RS09150: BWI76_RS09150 - DNA-binding transcriptional repressor DeoR, at 1,933,191 to 1,933,949 _RS09150 BWI76_RS09155: BWI76_RS09155 - undecaprenyl-diphosphatase, at 1,934,075 to 1,934,668 _RS09155 Position (kb) 1933 1934Strain fitness (log2 ratio) -2 -1 0 1 2at 1932.218 kb on - strand, within BWI76_RS09145at 1932.451 kb on + strand, within BWI76_RS09145at 1932.507 kb on - strand, within BWI76_RS09145at 1933.337 kb on + strand, within BWI76_RS09150at 1933.391 kb on + strand, within BWI76_RS09150at 1933.393 kb on - strand, within BWI76_RS09150at 1933.765 kb on - strand, within BWI76_RS09150at 1933.892 kb on - strandat 1933.896 kb on + strandat 1934.328 kb on - strand, within BWI76_RS09155at 1934.407 kb on - strand, within BWI76_RS09155at 1934.407 kb on - strand, within BWI76_RS09155at 1934.410 kb on + strand, within BWI76_RS09155at 1934.523 kb on + strand, within BWI76_RS09155at 1934.625 kb on + strandat 1934.625 kb on + strandat 1934.625 kb on + strandat 1934.625 kb on + strandat 1934.625 kb on + strandat 1934.625 kb on + strandat 1934.633 kb on - strandat 1934.633 kb on - strandat 1934.633 kb on - strandat 1934.633 kb on - strandat 1934.678 kb on - strandat 1934.697 kb on - strandat 1934.737 kb on - strandat 1934.737 kb on - strandat 1934.801 kb on + strandat 1934.803 kb on + strandat 1934.819 kb on + strandat 1934.819 kb on + strandat 1934.891 kb on - strandat 1934.892 kb on - strandat 1934.920 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine (C)
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1,932,218 - BWI76_RS09145 0.21 -1.1
1,932,451 + BWI76_RS09145 0.41 -0.2
1,932,507 - BWI76_RS09145 0.45 +2.5
1,933,337 + BWI76_RS09150 0.19 +0.9
1,933,391 + BWI76_RS09150 0.26 +1.0
1,933,393 - BWI76_RS09150 0.27 +2.0
1,933,765 - BWI76_RS09150 0.76 +1.6
1,933,892 - +2.6
1,933,896 + +2.0
1,934,328 - BWI76_RS09155 0.43 +0.2
1,934,407 - BWI76_RS09155 0.56 -0.4
1,934,407 - BWI76_RS09155 0.56 +0.3
1,934,410 + BWI76_RS09155 0.56 +0.4
1,934,523 + BWI76_RS09155 0.75 +0.9
1,934,625 + +0.6
1,934,625 + -0.3
1,934,625 + +0.0
1,934,625 + -1.0
1,934,625 + -0.1
1,934,625 + +0.4
1,934,633 - +0.3
1,934,633 - +0.9
1,934,633 - -0.0
1,934,633 - -0.6
1,934,678 - +0.5
1,934,697 - -0.4
1,934,737 - -1.0
1,934,737 - -0.4
1,934,801 + -1.9
1,934,803 + +0.1
1,934,819 + +0.2
1,934,819 + +0.4
1,934,891 - +0.0
1,934,892 - -0.2
1,934,920 + +0.0

Or see this region's nucleotide sequence