Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2857

Experiment: L-Methionine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2855 and Dshi_2856 are separated by 114 nucleotidesDshi_2856 and Dshi_2857 are separated by 85 nucleotidesDshi_2857 and Dshi_2858 are separated by 146 nucleotidesDshi_2858 and Dshi_2859 overlap by 4 nucleotides Dshi_2855: Dshi_2855 - methylmalonyl-CoA mutase, large subunit (RefSeq), at 3,013,589 to 3,015,562 _2855 Dshi_2856: Dshi_2856 - hypothetical protein (RefSeq), at 3,015,677 to 3,016,192 _2856 Dshi_2857: Dshi_2857 - hypothetical protein (RefSeq), at 3,016,278 to 3,016,748 _2857 Dshi_2858: Dshi_2858 - purine nucleoside phosphorylase (RefSeq), at 3,016,895 to 3,017,599 _2858 Dshi_2859: Dshi_2859 - hypothetical protein (RefSeq), at 3,017,596 to 3,018,039 _2859 Position (kb) 3016 3017Strain fitness (log2 ratio) -3 -2 -1 0 1at 3015.395 kb on - strandat 3015.680 kb on + strandat 3015.805 kb on - strand, within Dshi_2856at 3016.023 kb on + strand, within Dshi_2856at 3016.219 kb on + strandat 3016.231 kb on + strandat 3016.236 kb on + strandat 3016.237 kb on + strandat 3016.237 kb on + strandat 3016.419 kb on - strand, within Dshi_2857at 3016.465 kb on + strand, within Dshi_2857at 3016.511 kb on + strand, within Dshi_2857at 3016.583 kb on + strand, within Dshi_2857at 3016.622 kb on - strand, within Dshi_2857at 3016.863 kb on + strandat 3016.871 kb on - strandat 3017.113 kb on - strand, within Dshi_2858at 3017.144 kb on + strand, within Dshi_2858at 3017.358 kb on - strand, within Dshi_2858at 3017.530 kb on + strandat 3017.589 kb on - strandat 3017.644 kb on - strand, within Dshi_2859

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Methionine (N)
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3,015,395 - +1.0
3,015,680 + +0.4
3,015,805 - Dshi_2856 0.25 +0.1
3,016,023 + Dshi_2856 0.67 +0.4
3,016,219 + -1.5
3,016,231 + -0.2
3,016,236 + -0.1
3,016,237 + -0.5
3,016,237 + -1.1
3,016,419 - Dshi_2857 0.30 -0.2
3,016,465 + Dshi_2857 0.40 +0.1
3,016,511 + Dshi_2857 0.49 -1.0
3,016,583 + Dshi_2857 0.65 -0.2
3,016,622 - Dshi_2857 0.73 -2.8
3,016,863 + -0.0
3,016,871 - +0.5
3,017,113 - Dshi_2858 0.31 +0.8
3,017,144 + Dshi_2858 0.35 +0.1
3,017,358 - Dshi_2858 0.66 -0.8
3,017,530 + +0.2
3,017,589 - -0.0
3,017,644 - Dshi_2859 0.11 +1.2

Or see this region's nucleotide sequence