Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0137

Experiment: L-Methionine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0135 and Dshi_0136 are separated by 50 nucleotidesDshi_0136 and Dshi_0137 overlap by 4 nucleotidesDshi_0137 and Dshi_0138 are separated by 22 nucleotides Dshi_0135: Dshi_0135 - protein of unknown function DUF482 (RefSeq), at 133,351 to 134,571 _0135 Dshi_0136: Dshi_0136 - glycerophosphoryl diester phosphodiesterase (RefSeq), at 134,622 to 135,395 _0136 Dshi_0137: Dshi_0137 - Endoribonuclease L-PSP (RefSeq), at 135,392 to 135,859 _0137 Dshi_0138: Dshi_0138 - type I secretion membrane fusion protein, HlyD family (RefSeq), at 135,882 to 137,189 _0138 Position (kb) 135 136Strain fitness (log2 ratio) -1 0 1at 134.485 kb on - strandat 134.603 kb on - strandat 134.779 kb on - strand, within Dshi_0136at 134.922 kb on - strand, within Dshi_0136at 134.991 kb on - strand, within Dshi_0136at 135.012 kb on - strand, within Dshi_0136at 135.098 kb on - strand, within Dshi_0136at 135.227 kb on + strand, within Dshi_0136at 135.381 kb on - strandat 135.584 kb on - strand, within Dshi_0137at 135.698 kb on - strand, within Dshi_0137at 135.739 kb on + strand, within Dshi_0137at 135.814 kb on + strandat 135.820 kb on + strandat 135.833 kb on - strandat 135.890 kb on + strandat 135.993 kb on - strandat 136.012 kb on - strandat 136.058 kb on - strand, within Dshi_0138at 136.225 kb on + strand, within Dshi_0138at 136.251 kb on - strand, within Dshi_0138at 136.251 kb on - strand, within Dshi_0138at 136.347 kb on - strand, within Dshi_0138at 136.492 kb on + strand, within Dshi_0138at 136.527 kb on - strand, within Dshi_0138at 136.566 kb on + strand, within Dshi_0138at 136.585 kb on - strand, within Dshi_0138at 136.724 kb on + strand, within Dshi_0138at 136.741 kb on + strand, within Dshi_0138at 136.781 kb on + strand, within Dshi_0138at 136.781 kb on + strand, within Dshi_0138

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Methionine (N)
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134,485 - -1.0
134,603 - +0.3
134,779 - Dshi_0136 0.20 -0.5
134,922 - Dshi_0136 0.39 -0.1
134,991 - Dshi_0136 0.48 -0.1
135,012 - Dshi_0136 0.50 -0.2
135,098 - Dshi_0136 0.61 -0.9
135,227 + Dshi_0136 0.78 -0.4
135,381 - -0.4
135,584 - Dshi_0137 0.41 -0.8
135,698 - Dshi_0137 0.65 -1.5
135,739 + Dshi_0137 0.74 -1.3
135,814 + -1.2
135,820 + -0.4
135,833 - -1.6
135,890 + -0.6
135,993 - -1.2
136,012 - -0.0
136,058 - Dshi_0138 0.13 +0.1
136,225 + Dshi_0138 0.26 +1.2
136,251 - Dshi_0138 0.28 -0.3
136,251 - Dshi_0138 0.28 -0.1
136,347 - Dshi_0138 0.36 +0.3
136,492 + Dshi_0138 0.47 -0.9
136,527 - Dshi_0138 0.49 +0.7
136,566 + Dshi_0138 0.52 +0.3
136,585 - Dshi_0138 0.54 -0.0
136,724 + Dshi_0138 0.64 +0.1
136,741 + Dshi_0138 0.66 +0.6
136,781 + Dshi_0138 0.69 +1.5
136,781 + Dshi_0138 0.69 -0.5

Or see this region's nucleotide sequence