Strain Fitness in Sinorhizobium meliloti 1021 around SMc04213

Experiment: L-Lysine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc04212 and SMc04213 are separated by 28 nucleotidesSMc04213 and SMc04214 are separated by 204 nucleotides SMc04212: SMc04212 - sensor histidine kinase transmembrane protein, at 2,040,134 to 2,041,669 SMc04212 SMc04213: SMc04213 - diacylglycerol kinase, at 2,041,698 to 2,042,111 SMc04213 SMc04214: SMc04214 - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, at 2,042,316 to 2,043,332 SMc04214 Position (kb) 2041 2042 2043Strain fitness (log2 ratio) -2 -1 0 1 2at 2040.812 kb on - strand, within SMc04212at 2040.822 kb on + strand, within SMc04212at 2040.822 kb on + strand, within SMc04212at 2040.823 kb on - strand, within SMc04212at 2040.931 kb on - strand, within SMc04212at 2041.006 kb on - strand, within SMc04212at 2041.040 kb on + strand, within SMc04212at 2041.041 kb on - strand, within SMc04212at 2041.376 kb on + strand, within SMc04212at 2041.722 kb on + strandat 2041.722 kb on + strandat 2041.729 kb on + strandat 2041.729 kb on + strandat 2041.730 kb on - strandat 2041.730 kb on - strandat 2041.906 kb on + strand, within SMc04213at 2041.907 kb on - strand, within SMc04213at 2042.021 kb on - strand, within SMc04213at 2042.093 kb on + strandat 2042.093 kb on + strandat 2042.094 kb on - strandat 2042.253 kb on + strandat 2042.254 kb on - strandat 2042.272 kb on + strandat 2042.273 kb on - strandat 2042.331 kb on + strandat 2042.332 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine
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2,040,812 - SMc04212 0.44 -0.1
2,040,822 + SMc04212 0.45 -1.1
2,040,822 + SMc04212 0.45 +2.5
2,040,823 - SMc04212 0.45 +0.2
2,040,931 - SMc04212 0.52 +0.8
2,041,006 - SMc04212 0.57 +0.4
2,041,040 + SMc04212 0.59 -0.6
2,041,041 - SMc04212 0.59 -0.8
2,041,376 + SMc04212 0.81 +0.4
2,041,722 + -1.1
2,041,722 + -1.1
2,041,729 + -0.3
2,041,729 + -1.6
2,041,730 - -1.6
2,041,730 - -0.9
2,041,906 + SMc04213 0.50 -1.2
2,041,907 - SMc04213 0.50 -1.8
2,042,021 - SMc04213 0.78 -1.8
2,042,093 + -1.4
2,042,093 + -1.1
2,042,094 - -1.9
2,042,253 + -0.8
2,042,254 - +0.5
2,042,272 + +0.2
2,042,273 - +0.1
2,042,331 + +0.1
2,042,332 - +0.3

Or see this region's nucleotide sequence