Experiment: L-Lysine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03044 and SMc03045 overlap by 65 nucleotides SMc03045 and SMc03046 are separated by 271 nucleotides SMc03046 and SMc03047 are separated by 90 nucleotides
SMc03044: SMc03044 - chemotaxis protein (motility protein D), at 740,239 to 741,666
SMc03044
SMc03045: SMc03045 - hypothetical protein, at 741,602 to 742,168
SMc03045
SMc03046: SMc03046 - transcriptional regulator, at 742,440 to 743,111
SMc03046
SMc03047: SMc03047 - flagellar hook protein FlgE, at 743,202 to 744,422
SMc03047
Position (kb) 742
743
744 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 741.609 kb on + strand at 741.609 kb on + strand at 741.658 kb on + strand at 741.664 kb on + strand at 741.664 kb on + strand at 741.664 kb on + strand at 741.665 kb on - strand at 741.722 kb on + strand, within SMc03045 at 741.747 kb on - strand, within SMc03045 at 741.821 kb on + strand, within SMc03045 at 741.917 kb on + strand, within SMc03045 at 741.918 kb on - strand, within SMc03045 at 741.984 kb on - strand, within SMc03045 at 742.088 kb on + strand, within SMc03045 at 742.089 kb on - strand, within SMc03045 at 742.308 kb on + strand at 742.309 kb on - strand at 742.368 kb on + strand at 742.483 kb on - strand at 742.915 kb on - strand, within SMc03046 at 742.915 kb on - strand, within SMc03046 at 742.915 kb on - strand at 742.958 kb on - strand, within SMc03046 at 742.958 kb on - strand, within SMc03046 at 742.971 kb on + strand, within SMc03046 at 742.972 kb on - strand, within SMc03046 at 743.091 kb on + strand at 743.168 kb on + strand at 743.169 kb on - strand at 743.169 kb on - strand at 743.202 kb on - strand at 743.212 kb on - strand at 743.212 kb on - strand at 743.307 kb on + strand at 743.364 kb on + strand, within SMc03047 at 743.365 kb on - strand, within SMc03047 at 743.366 kb on + strand, within SMc03047 at 743.367 kb on - strand, within SMc03047 at 743.380 kb on + strand, within SMc03047 at 743.381 kb on - strand, within SMc03047 at 743.381 kb on - strand, within SMc03047 at 743.381 kb on - strand, within SMc03047 at 743.397 kb on + strand, within SMc03047 at 743.502 kb on + strand, within SMc03047 at 743.502 kb on + strand, within SMc03047 at 743.580 kb on + strand, within SMc03047 at 743.581 kb on - strand, within SMc03047 at 743.587 kb on - strand, within SMc03047 at 743.587 kb on - strand, within SMc03047 at 743.757 kb on + strand, within SMc03047 at 743.757 kb on + strand, within SMc03047 at 743.889 kb on - strand, within SMc03047 at 743.889 kb on - strand, within SMc03047 at 744.108 kb on + strand, within SMc03047 at 744.108 kb on + strand, within SMc03047 at 744.108 kb on + strand, within SMc03047 at 744.109 kb on - strand, within SMc03047 at 744.109 kb on - strand, within SMc03047
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine remove 741,609 + -1.4 741,609 + +1.0 741,658 + -0.6 741,664 + -0.6 741,664 + +0.1 741,664 + +0.1 741,665 - -0.7 741,722 + SMc03045 0.21 -0.3 741,747 - SMc03045 0.26 -0.2 741,821 + SMc03045 0.39 +0.1 741,917 + SMc03045 0.56 -0.2 741,918 - SMc03045 0.56 -0.2 741,984 - SMc03045 0.67 -0.3 742,088 + SMc03045 0.86 +0.2 742,089 - SMc03045 0.86 -0.8 742,308 + +0.1 742,309 - -0.8 742,368 + -2.4 742,483 - -3.0 742,915 - SMc03046 0.71 -1.4 742,915 - SMc03046 0.71 -3.1 742,915 - -1.4 742,958 - SMc03046 0.77 -1.6 742,958 - SMc03046 0.77 -0.8 742,971 + SMc03046 0.79 -0.8 742,972 - SMc03046 0.79 -1.1 743,091 + -0.4 743,168 + -0.3 743,169 - -0.7 743,169 - -0.4 743,202 - -1.7 743,212 - -0.4 743,212 - +1.3 743,307 + -2.6 743,364 + SMc03047 0.13 -0.9 743,365 - SMc03047 0.13 -1.1 743,366 + SMc03047 0.13 -0.3 743,367 - SMc03047 0.14 -3.1 743,380 + SMc03047 0.15 -1.4 743,381 - SMc03047 0.15 -0.4 743,381 - SMc03047 0.15 -0.7 743,381 - SMc03047 0.15 +0.7 743,397 + SMc03047 0.16 -1.1 743,502 + SMc03047 0.25 -0.7 743,502 + SMc03047 0.25 -1.9 743,580 + SMc03047 0.31 -0.7 743,581 - SMc03047 0.31 -0.3 743,587 - SMc03047 0.32 -0.2 743,587 - SMc03047 0.32 -1.1 743,757 + SMc03047 0.45 -0.7 743,757 + SMc03047 0.45 +1.6 743,889 - SMc03047 0.56 -0.4 743,889 - SMc03047 0.56 +0.1 744,108 + SMc03047 0.74 -0.8 744,108 + SMc03047 0.74 -0.5 744,108 + SMc03047 0.74 -0.1 744,109 - SMc03047 0.74 -0.5 744,109 - SMc03047 0.74 +0.4
Or see this region's nucleotide sequence