Experiment: L-Lysine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02701 and SMc02702 overlap by 4 nucleotides SMc02702 and SMc02703 are separated by 298 nucleotides SMc02703 and SMc02704 are separated by 3 nucleotides SMc02704 and SMc02705 overlap by 4 nucleotides
SMc02701: SMc02701 - hypothetical protein, at 2,549,297 to 2,549,929
SMc02701
SMc02702: SMc02702 - hypothetical protein, at 2,549,926 to 2,550,609
SMc02702
SMc02703: SMc02703 - hypothetical protein, at 2,550,908 to 2,551,921
SMc02703
SMc02704: SMc02704 - hypothetical protein, at 2,551,925 to 2,552,845
SMc02704
SMc02705: SMc02705 - hypothetical protein, at 2,552,842 to 2,555,655
SMc02705
Position (kb)
2550
2551
2552 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2550.047 kb on + strand, within SMc02702 at 2550.047 kb on + strand, within SMc02702 at 2550.047 kb on + strand, within SMc02702 at 2550.047 kb on + strand, within SMc02702 at 2550.047 kb on + strand, within SMc02702 at 2550.048 kb on - strand, within SMc02702 at 2550.048 kb on - strand, within SMc02702 at 2550.048 kb on - strand, within SMc02702 at 2550.048 kb on - strand, within SMc02702 at 2550.098 kb on + strand, within SMc02702 at 2550.293 kb on + strand, within SMc02702 at 2550.294 kb on - strand, within SMc02702 at 2550.294 kb on - strand, within SMc02702 at 2550.294 kb on - strand, within SMc02702 at 2550.294 kb on - strand, within SMc02702 at 2550.294 kb on - strand, within SMc02702 at 2550.294 kb on - strand, within SMc02702 at 2550.374 kb on + strand, within SMc02702 at 2550.375 kb on - strand, within SMc02702 at 2550.375 kb on - strand, within SMc02702 at 2550.375 kb on - strand, within SMc02702 at 2550.653 kb on + strand at 2550.654 kb on - strand at 2550.662 kb on + strand at 2550.662 kb on + strand at 2550.685 kb on + strand at 2550.701 kb on - strand at 2550.737 kb on + strand at 2550.796 kb on + strand at 2552.794 kb on + strand at 2552.794 kb on + strand at 2552.794 kb on + strand at 2552.794 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine remove 2,550,047 + SMc02702 0.18 +0.1 2,550,047 + SMc02702 0.18 -0.5 2,550,047 + SMc02702 0.18 -0.6 2,550,047 + SMc02702 0.18 -2.2 2,550,047 + SMc02702 0.18 -0.8 2,550,048 - SMc02702 0.18 +0.5 2,550,048 - SMc02702 0.18 +0.1 2,550,048 - SMc02702 0.18 -0.4 2,550,048 - SMc02702 0.18 -2.6 2,550,098 + SMc02702 0.25 +1.5 2,550,293 + SMc02702 0.54 -1.6 2,550,294 - SMc02702 0.54 -0.5 2,550,294 - SMc02702 0.54 -0.8 2,550,294 - SMc02702 0.54 +0.8 2,550,294 - SMc02702 0.54 -0.7 2,550,294 - SMc02702 0.54 -0.1 2,550,294 - SMc02702 0.54 -0.1 2,550,374 + SMc02702 0.65 -0.9 2,550,375 - SMc02702 0.66 -0.3 2,550,375 - SMc02702 0.66 -0.5 2,550,375 - SMc02702 0.66 +0.5 2,550,653 + +0.2 2,550,654 - -0.1 2,550,662 + -0.4 2,550,662 + +0.1 2,550,685 + +1.9 2,550,701 - -0.5 2,550,737 + -0.7 2,550,796 + -0.5 2,552,794 + +0.2 2,552,794 + -0.2 2,552,794 + +3.1 2,552,794 + +0.2
Or see this region's nucleotide sequence