Experiment: L-Lysine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02506 and SMc02505 are separated by 228 nucleotides SMc02505 and SMc02504 are separated by 14 nucleotides SMc02504 and SMc02503 are separated by 103 nucleotides
SMc02506: SMc02506 - iron transport system membrane ABC transporter protein, at 3,286,617 to 3,287,471
SMc02506
SMc02505: SMc02505 - hypothetical protein, at 3,287,700 to 3,288,584
SMc02505
SMc02504: SMc02504 - transcriptional regulator, at 3,288,599 to 3,289,051
SMc02504
SMc02503: SMc02503 - hypothetical protein, at 3,289,155 to 3,290,258
SMc02503
Position (kb)
3287
3288
3289 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3287.418 kb on + strand at 3287.419 kb on - strand at 3287.475 kb on + strand at 3287.475 kb on + strand at 3287.475 kb on + strand at 3287.475 kb on + strand at 3287.475 kb on + strand at 3287.475 kb on + strand at 3287.475 kb on + strand at 3287.476 kb on - strand at 3287.624 kb on + strand at 3287.624 kb on + strand at 3287.625 kb on - strand at 3287.663 kb on + strand at 3287.894 kb on + strand, within SMc02505 at 3288.185 kb on + strand, within SMc02505 at 3288.597 kb on + strand at 3288.598 kb on - strand at 3288.598 kb on - strand at 3288.852 kb on + strand, within SMc02504 at 3288.852 kb on + strand, within SMc02504 at 3288.853 kb on - strand, within SMc02504 at 3288.884 kb on + strand, within SMc02504 at 3289.052 kb on - strand at 3289.103 kb on + strand at 3289.139 kb on - strand at 3289.220 kb on + strand at 3289.230 kb on + strand at 3289.336 kb on + strand, within SMc02503
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine remove 3,287,418 + -0.2 3,287,419 - -0.2 3,287,475 + -0.0 3,287,475 + +0.0 3,287,475 + +0.4 3,287,475 + +0.2 3,287,475 + -1.3 3,287,475 + +0.8 3,287,475 + +0.3 3,287,476 - +0.3 3,287,624 + +0.4 3,287,624 + +1.0 3,287,625 - -1.2 3,287,663 + -0.7 3,287,894 + SMc02505 0.22 +0.6 3,288,185 + SMc02505 0.55 -2.3 3,288,597 + +0.6 3,288,598 - -0.8 3,288,598 - +2.2 3,288,852 + SMc02504 0.56 -1.0 3,288,852 + SMc02504 0.56 -0.5 3,288,853 - SMc02504 0.56 -0.2 3,288,884 + SMc02504 0.63 -0.3 3,289,052 - -0.4 3,289,103 + -1.4 3,289,139 - -1.0 3,289,220 + +0.3 3,289,230 + +0.3 3,289,336 + SMc02503 0.16 -0.5
Or see this region's nucleotide sequence