Strain Fitness in Sinorhizobium meliloti 1021 around SMc02505

Experiment: L-Lysine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02506 and SMc02505 are separated by 228 nucleotidesSMc02505 and SMc02504 are separated by 14 nucleotidesSMc02504 and SMc02503 are separated by 103 nucleotides SMc02506: SMc02506 - iron transport system membrane ABC transporter protein, at 3,286,617 to 3,287,471 SMc02506 SMc02505: SMc02505 - hypothetical protein, at 3,287,700 to 3,288,584 SMc02505 SMc02504: SMc02504 - transcriptional regulator, at 3,288,599 to 3,289,051 SMc02504 SMc02503: SMc02503 - hypothetical protein, at 3,289,155 to 3,290,258 SMc02503 Position (kb) 3287 3288 3289Strain fitness (log2 ratio) -2 -1 0 1 2at 3287.418 kb on + strandat 3287.419 kb on - strandat 3287.475 kb on + strandat 3287.475 kb on + strandat 3287.475 kb on + strandat 3287.475 kb on + strandat 3287.475 kb on + strandat 3287.475 kb on + strandat 3287.475 kb on + strandat 3287.476 kb on - strandat 3287.624 kb on + strandat 3287.624 kb on + strandat 3287.625 kb on - strandat 3287.663 kb on + strandat 3287.894 kb on + strand, within SMc02505at 3288.185 kb on + strand, within SMc02505at 3288.597 kb on + strandat 3288.598 kb on - strandat 3288.598 kb on - strandat 3288.852 kb on + strand, within SMc02504at 3288.852 kb on + strand, within SMc02504at 3288.853 kb on - strand, within SMc02504at 3288.884 kb on + strand, within SMc02504at 3289.052 kb on - strandat 3289.103 kb on + strandat 3289.139 kb on - strandat 3289.220 kb on + strandat 3289.230 kb on + strandat 3289.336 kb on + strand, within SMc02503

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine
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3,287,418 + -0.2
3,287,419 - -0.2
3,287,475 + -0.0
3,287,475 + +0.0
3,287,475 + +0.4
3,287,475 + +0.2
3,287,475 + -1.3
3,287,475 + +0.8
3,287,475 + +0.3
3,287,476 - +0.3
3,287,624 + +0.4
3,287,624 + +1.0
3,287,625 - -1.2
3,287,663 + -0.7
3,287,894 + SMc02505 0.22 +0.6
3,288,185 + SMc02505 0.55 -2.3
3,288,597 + +0.6
3,288,598 - -0.8
3,288,598 - +2.2
3,288,852 + SMc02504 0.56 -1.0
3,288,852 + SMc02504 0.56 -0.5
3,288,853 - SMc02504 0.56 -0.2
3,288,884 + SMc02504 0.63 -0.3
3,289,052 - -0.4
3,289,103 + -1.4
3,289,139 - -1.0
3,289,220 + +0.3
3,289,230 + +0.3
3,289,336 + SMc02503 0.16 -0.5

Or see this region's nucleotide sequence