Experiment: L-Lysine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02487 and SMc02486 are separated by 36 nucleotides SMc02486 and SMc02485 overlap by 4 nucleotides SMc02485 and SMc02484 overlap by 1 nucleotides SMc02484 and SMc02483 are separated by 255 nucleotides
SMc02487: SMc02487 - dihydrolipoamide dehydrogenase, at 3,308,114 to 3,309,520
SMc02487
SMc02486: SMc02486 - oxidoreductase, at 3,309,557 to 3,310,309
SMc02486
SMc02485: SMc02485 - signal peptide protein, at 3,310,306 to 3,310,806
SMc02485
SMc02484: SMc02484 - amino acid efflux transmembrane protein, at 3,310,806 to 3,311,450
SMc02484
SMc02483: SMc02483 - dihydrolipoamide succinyltransferase, at 3,311,706 to 3,312,959
SMc02483
Position (kb)
3310
3311 Strain fitness (log2 ratio)
-1
0
1 at 3309.598 kb on - strand at 3309.598 kb on - strand at 3309.622 kb on - strand at 3309.765 kb on - strand, within SMc02486 at 3309.765 kb on - strand, within SMc02486 at 3309.835 kb on - strand, within SMc02486 at 3309.844 kb on - strand, within SMc02486 at 3309.844 kb on - strand, within SMc02486 at 3310.207 kb on - strand, within SMc02486 at 3310.207 kb on - strand, within SMc02486 at 3310.207 kb on - strand, within SMc02486 at 3310.354 kb on - strand at 3310.354 kb on - strand at 3310.354 kb on - strand at 3310.482 kb on - strand, within SMc02485 at 3310.695 kb on - strand, within SMc02485 at 3311.237 kb on - strand, within SMc02484 at 3311.279 kb on - strand, within SMc02484 at 3311.279 kb on - strand, within SMc02484 at 3311.279 kb on - strand, within SMc02484 at 3311.279 kb on - strand, within SMc02484 at 3311.441 kb on - strand at 3311.469 kb on - strand at 3311.518 kb on - strand at 3311.692 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine remove 3,309,598 - -0.1 3,309,598 - +0.3 3,309,622 - +0.7 3,309,765 - SMc02486 0.28 +0.2 3,309,765 - SMc02486 0.28 +1.2 3,309,835 - SMc02486 0.37 +0.5 3,309,844 - SMc02486 0.38 +0.2 3,309,844 - SMc02486 0.38 -0.9 3,310,207 - SMc02486 0.86 -0.1 3,310,207 - SMc02486 0.86 +0.3 3,310,207 - SMc02486 0.86 +0.3 3,310,354 - -0.3 3,310,354 - -0.3 3,310,354 - -1.2 3,310,482 - SMc02485 0.35 -1.6 3,310,695 - SMc02485 0.78 -0.7 3,311,237 - SMc02484 0.67 -0.7 3,311,279 - SMc02484 0.73 -0.6 3,311,279 - SMc02484 0.73 -1.4 3,311,279 - SMc02484 0.73 -0.4 3,311,279 - SMc02484 0.73 -1.6 3,311,441 - +0.3 3,311,469 - -1.4 3,311,518 - -0.5 3,311,692 - -0.8
Or see this region's nucleotide sequence