Experiment: L-Lysine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02142 and SMc02141 are separated by 86 nucleotides SMc02141 and SMc02140 are separated by 110 nucleotides SMc02140 and SMc02139 are separated by 94 nucleotides
SMc02142: SMc02142 - phosphate transporter ATP-binding protein, at 570,657 to 571,472
SMc02142
SMc02141: SMc02141 - phosphate transporter PhoU, at 571,559 to 572,272
SMc02141
SMc02140: SMc02140 - phosphate regulon transcriptional regulatory protein, at 572,383 to 573,066
SMc02140
SMc02139: SMc02139 - hypothetical protein, at 573,161 to 573,682
SMc02139
Position (kb) 572
573
574 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 571.403 kb on + strand at 571.449 kb on + strand at 571.449 kb on + strand at 571.450 kb on - strand at 571.450 kb on - strand at 571.450 kb on - strand at 571.510 kb on + strand at 571.511 kb on - strand at 571.558 kb on + strand at 571.804 kb on - strand, within SMc02141 at 571.985 kb on + strand, within SMc02141 at 571.985 kb on + strand, within SMc02141 at 572.052 kb on - strand, within SMc02141 at 572.082 kb on - strand, within SMc02141 at 572.082 kb on - strand, within SMc02141 at 572.193 kb on - strand, within SMc02141 at 572.193 kb on - strand, within SMc02141 at 572.193 kb on - strand, within SMc02141 at 572.365 kb on - strand at 572.377 kb on + strand at 572.736 kb on + strand, within SMc02140 at 572.948 kb on - strand, within SMc02140 at 574.007 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine remove 571,403 + +0.6 571,449 + +0.1 571,449 + +0.7 571,450 - -3.1 571,450 - -0.6 571,450 - -0.8 571,510 + +0.2 571,511 - -2.2 571,558 + -0.4 571,804 - SMc02141 0.34 -3.3 571,985 + SMc02141 0.60 -1.5 571,985 + SMc02141 0.60 +0.8 572,052 - SMc02141 0.69 -0.4 572,082 - SMc02141 0.73 -1.5 572,082 - SMc02141 0.73 -1.5 572,193 - SMc02141 0.89 -0.7 572,193 - SMc02141 0.89 -1.0 572,193 - SMc02141 0.89 -3.8 572,365 - -0.5 572,377 + -1.3 572,736 + SMc02140 0.52 -1.2 572,948 - SMc02140 0.83 -2.5 574,007 + -0.3
Or see this region's nucleotide sequence