Experiment: L-Lysine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01099 and SMc01098 are separated by 137 nucleotides SMc01098 and SMc01394 overlap by 134 nucleotides SMc01394 and SMc01097 are separated by 253 nucleotides SMc01097 and SMc01096 overlap by 14 nucleotides
SMc01099: SMc01099 - tRNA pseudouridine synthase A, at 457,078 to 457,821
SMc01099
SMc01098: SMc01098 - hypothetical protein, at 457,959 to 458,564
SMc01098
SMc01394: SMc01394 - hypothetical protein, at 458,431 to 458,886
SMc01394
SMc01097: SMc01097 - hypothetical protein, at 459,140 to 459,736
SMc01097
SMc01096: SMc01096 - succinyl-diaminopimelate desuccinylase, at 459,723 to 460,916
SMc01096
Position (kb) 458
459 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 457.799 kb on - strand at 457.816 kb on + strand at 457.816 kb on + strand at 457.956 kb on - strand at 459.372 kb on + strand, within SMc01097 at 459.372 kb on + strand, within SMc01097 at 459.373 kb on - strand, within SMc01097 at 459.373 kb on - strand, within SMc01097 at 459.707 kb on - strand at 459.707 kb on - strand at 459.707 kb on - strand at 459.707 kb on - strand at 459.708 kb on + strand at 459.708 kb on + strand at 459.708 kb on + strand at 459.709 kb on - strand at 459.709 kb on - strand at 459.709 kb on - strand at 459.709 kb on - strand at 459.709 kb on - strand at 459.709 kb on - strand at 459.709 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine remove 457,799 - +1.8 457,816 + +0.8 457,816 + +0.1 457,956 - -0.7 459,372 + SMc01097 0.39 -1.2 459,372 + SMc01097 0.39 -0.8 459,373 - SMc01097 0.39 +0.6 459,373 - SMc01097 0.39 -1.6 459,707 - -2.7 459,707 - -0.6 459,707 - -1.5 459,707 - +1.6 459,708 + -1.8 459,708 + -1.0 459,708 + -0.6 459,709 - -0.4 459,709 - -0.1 459,709 - -2.2 459,709 - -3.0 459,709 - -1.2 459,709 - -0.6 459,709 - -1.7
Or see this region's nucleotide sequence