Strain Fitness in Sinorhizobium meliloti 1021 around SMc00925

Experiment: L-Lysine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00926 and SMc00925 are separated by 238 nucleotidesSMc00925 and SMc00924 are separated by 190 nucleotides SMc00926: SMc00926 - D-lactate dehydrogenase, iron-sulfur subunit GlcF (EC 1.1.99.6) (from data), at 856,192 to 857,523 SMc00926 SMc00925: SMc00925 - signal peptide protein, at 857,762 to 858,457 SMc00925 SMc00924: SMc00924 - hypothetical protein, at 858,648 to 859,388 SMc00924 Position (kb) 857 858 859Strain fitness (log2 ratio) -1 0 1 2at 856.762 kb on + strand, within SMc00926at 857.026 kb on - strand, within SMc00926at 857.026 kb on - strand, within SMc00926at 857.059 kb on + strand, within SMc00926at 857.060 kb on - strand, within SMc00926at 857.067 kb on + strand, within SMc00926at 857.068 kb on - strand, within SMc00926at 857.068 kb on - strand, within SMc00926at 857.068 kb on - strand, within SMc00926at 857.068 kb on - strand, within SMc00926at 857.089 kb on + strand, within SMc00926at 857.089 kb on + strand, within SMc00926at 857.089 kb on + strand, within SMc00926at 857.090 kb on - strand, within SMc00926at 857.194 kb on + strand, within SMc00926at 857.323 kb on + strand, within SMc00926at 857.323 kb on + strand, within SMc00926at 857.323 kb on + strand, within SMc00926at 857.323 kb on + strand, within SMc00926at 857.324 kb on - strand, within SMc00926at 857.324 kb on - strand, within SMc00926at 857.324 kb on - strand, within SMc00926at 857.324 kb on - strand, within SMc00926at 857.380 kb on - strand, within SMc00926at 857.419 kb on - strandat 857.456 kb on + strandat 857.457 kb on - strandat 857.494 kb on + strandat 857.495 kb on - strandat 857.495 kb on - strandat 857.607 kb on + strandat 857.608 kb on - strandat 857.877 kb on + strand, within SMc00925at 857.877 kb on + strand, within SMc00925at 857.877 kb on + strand, within SMc00925at 857.877 kb on + strand, within SMc00925at 857.878 kb on - strand, within SMc00925at 857.878 kb on - strand, within SMc00925at 857.994 kb on + strand, within SMc00925at 857.994 kb on + strand, within SMc00925at 857.995 kb on - strand, within SMc00925at 858.001 kb on - strand, within SMc00925at 858.001 kb on - strand, within SMc00925at 858.001 kb on - strand, within SMc00925at 858.217 kb on - strand, within SMc00925at 858.222 kb on + strand, within SMc00925at 858.222 kb on + strand, within SMc00925at 858.223 kb on - strand, within SMc00925at 858.223 kb on - strand, within SMc00925at 858.295 kb on - strand, within SMc00925at 858.401 kb on - strandat 858.401 kb on - strandat 858.532 kb on + strandat 858.532 kb on + strandat 858.533 kb on - strandat 858.533 kb on - strandat 858.533 kb on - strandat 858.533 kb on - strandat 858.533 kb on - strandat 858.560 kb on + strandat 858.629 kb on + strandat 858.629 kb on + strandat 858.649 kb on + strandat 858.649 kb on + strandat 858.650 kb on - strandat 858.650 kb on - strandat 858.651 kb on + strandat 858.688 kb on + strandat 858.782 kb on - strand, within SMc00924at 858.795 kb on + strand, within SMc00924at 858.795 kb on + strand, within SMc00924at 858.796 kb on - strand, within SMc00924at 858.796 kb on - strand, within SMc00924at 858.799 kb on + strand, within SMc00924at 858.799 kb on + strand, within SMc00924at 858.799 kb on + strand, within SMc00924at 858.799 kb on + strand, within SMc00924at 858.799 kb on + strand, within SMc00924at 858.799 kb on + strand, within SMc00924at 858.800 kb on - strand, within SMc00924at 858.800 kb on - strand, within SMc00924at 858.800 kb on - strand, within SMc00924at 858.800 kb on - strand, within SMc00924at 858.856 kb on + strand, within SMc00924at 858.856 kb on + strand, within SMc00924at 859.015 kb on + strand, within SMc00924at 859.015 kb on + strand, within SMc00924at 859.016 kb on - strand, within SMc00924at 859.016 kb on - strand, within SMc00924at 859.016 kb on - strand, within SMc00924at 859.073 kb on - strand, within SMc00924at 859.219 kb on - strand, within SMc00924at 859.231 kb on + strand, within SMc00924at 859.231 kb on + strand, within SMc00924at 859.232 kb on - strand, within SMc00924at 859.232 kb on - strand, within SMc00924at 859.312 kb on + strand, within SMc00924at 859.354 kb on - strandat 859.354 kb on - strandat 859.354 kb on - strandat 859.354 kb on - strandat 859.402 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine
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856,762 + SMc00926 0.43 +0.6
857,026 - SMc00926 0.63 +0.1
857,026 - SMc00926 0.63 +0.4
857,059 + SMc00926 0.65 -0.1
857,060 - SMc00926 0.65 -0.1
857,067 + SMc00926 0.66 +0.6
857,068 - SMc00926 0.66 -0.0
857,068 - SMc00926 0.66 -0.4
857,068 - SMc00926 0.66 +0.0
857,068 - SMc00926 0.66 +0.2
857,089 + SMc00926 0.67 +0.8
857,089 + SMc00926 0.67 -0.8
857,089 + SMc00926 0.67 -0.1
857,090 - SMc00926 0.67 +0.1
857,194 + SMc00926 0.75 -1.0
857,323 + SMc00926 0.85 +1.6
857,323 + SMc00926 0.85 +0.2
857,323 + SMc00926 0.85 -1.3
857,323 + SMc00926 0.85 +0.0
857,324 - SMc00926 0.85 -0.9
857,324 - SMc00926 0.85 -0.6
857,324 - SMc00926 0.85 -0.6
857,324 - SMc00926 0.85 -0.2
857,380 - SMc00926 0.89 +1.3
857,419 - -0.0
857,456 + -0.2
857,457 - -0.1
857,494 + -0.0
857,495 - +1.9
857,495 - -0.2
857,607 + +0.4
857,608 - +0.1
857,877 + SMc00925 0.17 -1.7
857,877 + SMc00925 0.17 -0.4
857,877 + SMc00925 0.17 -0.4
857,877 + SMc00925 0.17 +0.6
857,878 - SMc00925 0.17 -0.4
857,878 - SMc00925 0.17 -0.3
857,994 + SMc00925 0.33 +0.6
857,994 + SMc00925 0.33 -0.3
857,995 - SMc00925 0.33 -0.6
858,001 - SMc00925 0.34 -1.2
858,001 - SMc00925 0.34 -1.3
858,001 - SMc00925 0.34 +0.2
858,217 - SMc00925 0.65 -0.7
858,222 + SMc00925 0.66 -0.1
858,222 + SMc00925 0.66 +0.0
858,223 - SMc00925 0.66 -0.8
858,223 - SMc00925 0.66 -0.1
858,295 - SMc00925 0.77 -0.4
858,401 - +0.8
858,401 - -0.0
858,532 + -1.2
858,532 + -1.3
858,533 - -0.3
858,533 - -0.7
858,533 - -0.4
858,533 - +0.3
858,533 - -0.7
858,560 + -0.2
858,629 + +2.2
858,629 + -0.3
858,649 + -0.2
858,649 + -0.1
858,650 - +0.3
858,650 - -0.6
858,651 + -0.7
858,688 + +0.5
858,782 - SMc00924 0.18 +0.3
858,795 + SMc00924 0.20 +0.2
858,795 + SMc00924 0.20 -0.7
858,796 - SMc00924 0.20 +0.2
858,796 - SMc00924 0.20 -0.9
858,799 + SMc00924 0.20 +0.3
858,799 + SMc00924 0.20 -1.2
858,799 + SMc00924 0.20 +0.4
858,799 + SMc00924 0.20 -0.7
858,799 + SMc00924 0.20 +0.2
858,799 + SMc00924 0.20 -1.0
858,800 - SMc00924 0.21 -0.3
858,800 - SMc00924 0.21 -0.7
858,800 - SMc00924 0.21 -0.1
858,800 - SMc00924 0.21 -0.5
858,856 + SMc00924 0.28 +0.6
858,856 + SMc00924 0.28 +0.9
859,015 + SMc00924 0.50 -0.8
859,015 + SMc00924 0.50 +1.0
859,016 - SMc00924 0.50 +0.6
859,016 - SMc00924 0.50 -0.8
859,016 - SMc00924 0.50 +0.6
859,073 - SMc00924 0.57 +0.2
859,219 - SMc00924 0.77 -0.7
859,231 + SMc00924 0.79 +0.3
859,231 + SMc00924 0.79 +0.3
859,232 - SMc00924 0.79 +1.4
859,232 - SMc00924 0.79 -0.7
859,312 + SMc00924 0.90 +1.4
859,354 - +0.8
859,354 - +0.9
859,354 - -0.3
859,354 - -0.3
859,402 + -0.8

Or see this region's nucleotide sequence