Experiment: L-Lysine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1375 and SMa1377 are separated by 29 nucleotides SMa1377 and SMa1379 are separated by 168 nucleotides
SMa1375: SMa1375 - ABC transporter substrate-binding protein, at 756,593 to 758,077
SMa1375
SMa1377: SMa1377 - amidase, at 758,107 to 759,522
SMa1377
SMa1379: SMa1379 - ABC transporter substrate-binding protein, at 759,691 to 761,166
SMa1379
Position (kb) 758
759
760 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 757.126 kb on - strand, within SMa1375 at 757.126 kb on - strand, within SMa1375 at 757.195 kb on - strand, within SMa1375 at 757.195 kb on - strand, within SMa1375 at 757.273 kb on + strand, within SMa1375 at 757.274 kb on - strand, within SMa1375 at 757.530 kb on + strand, within SMa1375 at 757.531 kb on - strand, within SMa1375 at 757.531 kb on - strand, within SMa1375 at 757.605 kb on + strand, within SMa1375 at 757.605 kb on + strand, within SMa1375 at 757.606 kb on - strand, within SMa1375 at 757.691 kb on - strand, within SMa1375 at 757.698 kb on + strand, within SMa1375 at 757.698 kb on + strand, within SMa1375 at 757.699 kb on - strand, within SMa1375 at 757.905 kb on + strand, within SMa1375 at 757.905 kb on + strand, within SMa1375 at 757.906 kb on - strand, within SMa1375 at 757.906 kb on - strand, within SMa1375 at 757.946 kb on - strand at 757.946 kb on - strand at 758.067 kb on - strand at 758.105 kb on + strand at 758.106 kb on - strand at 758.106 kb on - strand at 758.106 kb on - strand at 758.131 kb on + strand at 758.132 kb on - strand at 758.333 kb on + strand, within SMa1377 at 758.333 kb on + strand, within SMa1377 at 758.334 kb on - strand, within SMa1377 at 758.372 kb on + strand, within SMa1377 at 758.372 kb on + strand, within SMa1377 at 758.372 kb on + strand, within SMa1377 at 758.373 kb on - strand, within SMa1377 at 758.373 kb on - strand, within SMa1377 at 758.449 kb on - strand, within SMa1377 at 758.516 kb on - strand, within SMa1377 at 758.516 kb on - strand, within SMa1377 at 758.737 kb on + strand, within SMa1377 at 758.738 kb on - strand, within SMa1377 at 758.791 kb on + strand, within SMa1377 at 758.932 kb on - strand, within SMa1377 at 759.164 kb on - strand, within SMa1377 at 759.279 kb on + strand, within SMa1377 at 759.279 kb on + strand, within SMa1377 at 759.299 kb on - strand, within SMa1377 at 759.338 kb on + strand, within SMa1377 at 759.339 kb on - strand, within SMa1377 at 759.339 kb on - strand, within SMa1377 at 759.342 kb on + strand, within SMa1377 at 759.343 kb on - strand, within SMa1377 at 759.413 kb on + strand at 759.414 kb on - strand at 759.720 kb on + strand at 759.720 kb on + strand at 759.721 kb on - strand at 759.770 kb on + strand at 759.770 kb on + strand at 759.771 kb on - strand at 759.771 kb on - strand at 759.803 kb on + strand at 759.803 kb on + strand at 759.804 kb on - strand at 759.804 kb on - strand at 759.840 kb on - strand, within SMa1379 at 759.998 kb on + strand, within SMa1379 at 759.998 kb on + strand, within SMa1379 at 759.999 kb on - strand, within SMa1379 at 759.999 kb on - strand, within SMa1379 at 759.999 kb on - strand, within SMa1379 at 760.040 kb on + strand, within SMa1379 at 760.040 kb on + strand, within SMa1379 at 760.041 kb on - strand, within SMa1379 at 760.041 kb on - strand, within SMa1379 at 760.095 kb on - strand, within SMa1379 at 760.095 kb on - strand, within SMa1379 at 760.217 kb on + strand, within SMa1379 at 760.217 kb on + strand, within SMa1379 at 760.244 kb on + strand, within SMa1379 at 760.282 kb on + strand, within SMa1379 at 760.283 kb on - strand, within SMa1379
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine remove 757,126 - SMa1375 0.36 -0.2 757,126 - SMa1375 0.36 +0.8 757,195 - SMa1375 0.41 +0.2 757,195 - SMa1375 0.41 +0.3 757,273 + SMa1375 0.46 -0.7 757,274 - SMa1375 0.46 -0.9 757,530 + SMa1375 0.63 +0.0 757,531 - SMa1375 0.63 -0.2 757,531 - SMa1375 0.63 +0.4 757,605 + SMa1375 0.68 +0.5 757,605 + SMa1375 0.68 +1.0 757,606 - SMa1375 0.68 +0.3 757,691 - SMa1375 0.74 -0.4 757,698 + SMa1375 0.74 +0.5 757,698 + SMa1375 0.74 -1.0 757,699 - SMa1375 0.74 +0.5 757,905 + SMa1375 0.88 +0.1 757,905 + SMa1375 0.88 -0.7 757,906 - SMa1375 0.88 +0.5 757,906 - SMa1375 0.88 +0.8 757,946 - +2.2 757,946 - +0.4 758,067 - -0.6 758,105 + -0.2 758,106 - +0.2 758,106 - +0.7 758,106 - -1.4 758,131 + -1.2 758,132 - -0.4 758,333 + SMa1377 0.16 -1.1 758,333 + SMa1377 0.16 -0.3 758,334 - SMa1377 0.16 -0.4 758,372 + SMa1377 0.19 -0.1 758,372 + SMa1377 0.19 -0.7 758,372 + SMa1377 0.19 -1.0 758,373 - SMa1377 0.19 -1.0 758,373 - SMa1377 0.19 -0.5 758,449 - SMa1377 0.24 -0.2 758,516 - SMa1377 0.29 -0.3 758,516 - SMa1377 0.29 +0.4 758,737 + SMa1377 0.44 -0.5 758,738 - SMa1377 0.45 -1.4 758,791 + SMa1377 0.48 +0.3 758,932 - SMa1377 0.58 -1.0 759,164 - SMa1377 0.75 +0.1 759,279 + SMa1377 0.83 +0.3 759,279 + SMa1377 0.83 +0.4 759,299 - SMa1377 0.84 -0.8 759,338 + SMa1377 0.87 +1.0 759,339 - SMa1377 0.87 -1.7 759,339 - SMa1377 0.87 +1.3 759,342 + SMa1377 0.87 -0.1 759,343 - SMa1377 0.87 +2.2 759,413 + +0.4 759,414 - -0.7 759,720 + -2.2 759,720 + +0.1 759,721 - +2.2 759,770 + -0.3 759,770 + +0.0 759,771 - -0.5 759,771 - -0.6 759,803 + +0.5 759,803 + +1.6 759,804 - +1.9 759,804 - -3.0 759,840 - SMa1379 0.10 -0.1 759,998 + SMa1379 0.21 +0.1 759,998 + SMa1379 0.21 -0.2 759,999 - SMa1379 0.21 +0.5 759,999 - SMa1379 0.21 -0.1 759,999 - SMa1379 0.21 +0.8 760,040 + SMa1379 0.24 -0.5 760,040 + SMa1379 0.24 +0.1 760,041 - SMa1379 0.24 +0.2 760,041 - SMa1379 0.24 -0.0 760,095 - SMa1379 0.27 +0.3 760,095 - SMa1379 0.27 -0.5 760,217 + SMa1379 0.36 +0.5 760,217 + SMa1379 0.36 -0.4 760,244 + SMa1379 0.37 -1.2 760,282 + SMa1379 0.40 -0.4 760,283 - SMa1379 0.40 -0.1
Or see this region's nucleotide sequence