Experiment: L-Lysine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0343 and SMa0346 are separated by 3 nucleotides SMa0346 and SMa0347 are separated by 47 nucleotides SMa0347 and SMa0349 are separated by 308 nucleotides SMa0349 and SMa0352 are separated by 35 nucleotides
SMa0343: SMa0343 - hypothetical protein, at 186,903 to 187,337
SMa0343
SMa0346: SMa0346 - NAD(P)H dehydrogenase, at 187,341 to 187,958
SMa0346
SMa0347: SMa0347 - LysR family transcriptional regulator, at 188,006 to 188,893
SMa0347
SMa0349: SMa0349 - hypothetical protein, at 189,202 to 189,798
SMa0349
SMa0352: SMa0352 - hypothetical protein, at 189,834 to 190,730
SMa0352
Position (kb) 188
189 Strain fitness (log2 ratio) -2
-1
0
1
2 at 187.072 kb on + strand at 187.198 kb on - strand, within SMa0343 at 187.198 kb on - strand, within SMa0343 at 187.362 kb on + strand at 187.453 kb on + strand, within SMa0346 at 187.454 kb on - strand, within SMa0346 at 187.518 kb on + strand, within SMa0346 at 187.634 kb on - strand, within SMa0346 at 187.642 kb on + strand, within SMa0346 at 187.642 kb on + strand, within SMa0346 at 187.643 kb on - strand, within SMa0346 at 187.699 kb on + strand, within SMa0346 at 187.728 kb on - strand, within SMa0346 at 187.778 kb on + strand, within SMa0346 at 187.778 kb on + strand, within SMa0346 at 187.778 kb on + strand, within SMa0346 at 187.779 kb on - strand, within SMa0346 at 187.779 kb on - strand, within SMa0346 at 187.779 kb on - strand, within SMa0346 at 187.967 kb on + strand at 187.986 kb on + strand at 187.986 kb on + strand at 187.987 kb on - strand at 187.987 kb on - strand at 187.987 kb on - strand at 187.987 kb on - strand at 187.987 kb on - strand at 187.993 kb on + strand at 187.993 kb on + strand at 187.997 kb on - strand at 188.028 kb on + strand at 188.179 kb on + strand, within SMa0347 at 188.224 kb on + strand, within SMa0347 at 188.224 kb on + strand, within SMa0347 at 188.224 kb on + strand, within SMa0347 at 188.225 kb on - strand, within SMa0347 at 188.225 kb on - strand, within SMa0347 at 188.242 kb on + strand, within SMa0347 at 188.242 kb on + strand, within SMa0347 at 188.243 kb on - strand, within SMa0347 at 188.272 kb on - strand, within SMa0347 at 188.358 kb on + strand at 188.359 kb on - strand, within SMa0347 at 188.516 kb on + strand, within SMa0347 at 188.516 kb on + strand, within SMa0347 at 188.516 kb on - strand, within SMa0347 at 188.517 kb on - strand, within SMa0347 at 188.566 kb on + strand, within SMa0347 at 188.871 kb on + strand at 188.871 kb on + strand at 188.872 kb on - strand at 188.902 kb on + strand at 188.903 kb on - strand at 189.029 kb on + strand at 189.029 kb on + strand at 189.029 kb on + strand at 189.030 kb on - strand at 189.093 kb on - strand at 189.106 kb on + strand at 189.197 kb on + strand at 189.252 kb on + strand at 189.472 kb on - strand, within SMa0349 at 189.570 kb on + strand, within SMa0349 at 189.594 kb on - strand, within SMa0349
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine remove 187,072 + -0.3 187,198 - SMa0343 0.68 -0.2 187,198 - SMa0343 0.68 -0.0 187,362 + -0.2 187,453 + SMa0346 0.18 -0.5 187,454 - SMa0346 0.18 +0.4 187,518 + SMa0346 0.29 +2.2 187,634 - SMa0346 0.47 +0.4 187,642 + SMa0346 0.49 -0.6 187,642 + SMa0346 0.49 +0.7 187,643 - SMa0346 0.49 -1.4 187,699 + SMa0346 0.58 +1.4 187,728 - SMa0346 0.63 -0.8 187,778 + SMa0346 0.71 -0.2 187,778 + SMa0346 0.71 -0.7 187,778 + SMa0346 0.71 +1.1 187,779 - SMa0346 0.71 +0.4 187,779 - SMa0346 0.71 +0.2 187,779 - SMa0346 0.71 -1.3 187,967 + +0.8 187,986 + +0.2 187,986 + +0.7 187,987 - -0.0 187,987 - +0.6 187,987 - -0.3 187,987 - +0.2 187,987 - -0.2 187,993 + +0.2 187,993 + +0.4 187,997 - +1.2 188,028 + +0.7 188,179 + SMa0347 0.19 -0.6 188,224 + SMa0347 0.25 -0.4 188,224 + SMa0347 0.25 -0.6 188,224 + SMa0347 0.25 +0.1 188,225 - SMa0347 0.25 -0.1 188,225 - SMa0347 0.25 -0.3 188,242 + SMa0347 0.27 -0.5 188,242 + SMa0347 0.27 +2.2 188,243 - SMa0347 0.27 -0.1 188,272 - SMa0347 0.30 +0.0 188,358 + -0.3 188,359 - SMa0347 0.40 -1.1 188,516 + SMa0347 0.57 -0.6 188,516 + SMa0347 0.57 -0.6 188,516 - SMa0347 0.57 -2.4 188,517 - SMa0347 0.58 +0.7 188,566 + SMa0347 0.63 +0.6 188,871 + -1.1 188,871 + +0.3 188,872 - +1.0 188,902 + -1.2 188,903 - -0.1 189,029 + +0.1 189,029 + -0.1 189,029 + -0.8 189,030 - -0.0 189,093 - -0.9 189,106 + -0.1 189,197 + -1.6 189,252 + +1.1 189,472 - SMa0349 0.45 -0.3 189,570 + SMa0349 0.62 -1.1 189,594 - SMa0349 0.66 -0.3
Or see this region's nucleotide sequence