Experiment: L-Lysine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21529 and SM_b21530 are separated by 41 nucleotides SM_b21530 and SM_b21531 are separated by 60 nucleotides
SM_b21529: SM_b21529 - taurine dehydrogenase, at 1,054,222 to 1,055,622
_b21529
SM_b21530: SM_b21530 - sulfoacetaldehyde acetyltransferase, at 1,055,664 to 1,057,439
_b21530
SM_b21531: SM_b21531 - hypothetical protein, at 1,057,500 to 1,058,537
_b21531
Position (kb)
1055
1056
1057
1058 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1054.696 kb on + strand, within SM_b21529 at 1054.696 kb on + strand, within SM_b21529 at 1054.696 kb on + strand, within SM_b21529 at 1054.697 kb on - strand, within SM_b21529 at 1054.697 kb on - strand, within SM_b21529 at 1054.697 kb on - strand, within SM_b21529 at 1054.780 kb on - strand, within SM_b21529 at 1054.843 kb on + strand, within SM_b21529 at 1054.843 kb on + strand, within SM_b21529 at 1054.844 kb on - strand, within SM_b21529 at 1054.844 kb on - strand at 1054.844 kb on - strand, within SM_b21529 at 1054.844 kb on - strand, within SM_b21529 at 1055.035 kb on + strand, within SM_b21529 at 1055.036 kb on - strand, within SM_b21529 at 1055.036 kb on - strand, within SM_b21529 at 1055.037 kb on + strand, within SM_b21529 at 1055.038 kb on - strand, within SM_b21529 at 1055.056 kb on - strand, within SM_b21529 at 1055.056 kb on - strand, within SM_b21529 at 1055.056 kb on - strand, within SM_b21529 at 1055.188 kb on + strand, within SM_b21529 at 1055.188 kb on + strand, within SM_b21529 at 1055.189 kb on - strand, within SM_b21529 at 1055.189 kb on - strand, within SM_b21529 at 1055.189 kb on - strand, within SM_b21529 at 1055.191 kb on + strand, within SM_b21529 at 1055.192 kb on - strand, within SM_b21529 at 1055.306 kb on - strand, within SM_b21529 at 1055.335 kb on + strand, within SM_b21529 at 1055.335 kb on + strand, within SM_b21529 at 1055.336 kb on - strand, within SM_b21529 at 1055.336 kb on - strand, within SM_b21529 at 1055.417 kb on - strand, within SM_b21529 at 1055.429 kb on - strand, within SM_b21529 at 1055.429 kb on - strand, within SM_b21529 at 1055.450 kb on - strand, within SM_b21529 at 1055.450 kb on - strand, within SM_b21529 at 1055.450 kb on - strand, within SM_b21529 at 1055.450 kb on - strand, within SM_b21529 at 1055.587 kb on + strand at 1055.588 kb on - strand at 1055.588 kb on - strand at 1055.596 kb on + strand at 1055.599 kb on + strand at 1055.599 kb on + strand at 1055.599 kb on + strand at 1055.600 kb on - strand at 1055.638 kb on + strand at 1055.638 kb on + strand at 1055.936 kb on + strand, within SM_b21530 at 1056.040 kb on - strand, within SM_b21530 at 1056.389 kb on + strand, within SM_b21530 at 1056.389 kb on + strand, within SM_b21530 at 1056.389 kb on + strand, within SM_b21530 at 1056.415 kb on - strand, within SM_b21530 at 1056.415 kb on - strand, within SM_b21530 at 1056.517 kb on + strand, within SM_b21530 at 1056.517 kb on + strand, within SM_b21530 at 1056.517 kb on + strand, within SM_b21530 at 1056.517 kb on + strand, within SM_b21530 at 1056.517 kb on + strand at 1056.518 kb on - strand, within SM_b21530 at 1056.518 kb on - strand, within SM_b21530 at 1056.518 kb on - strand, within SM_b21530 at 1056.522 kb on + strand, within SM_b21530 at 1056.523 kb on - strand, within SM_b21530 at 1056.907 kb on - strand, within SM_b21530 at 1056.933 kb on + strand, within SM_b21530 at 1057.123 kb on - strand, within SM_b21530 at 1057.148 kb on + strand, within SM_b21530 at 1057.149 kb on - strand, within SM_b21530 at 1057.149 kb on - strand, within SM_b21530 at 1057.206 kb on + strand, within SM_b21530 at 1057.433 kb on + strand at 1057.433 kb on + strand at 1057.433 kb on + strand at 1057.434 kb on - strand at 1057.437 kb on + strand at 1057.437 kb on + strand at 1057.438 kb on - strand at 1057.560 kb on + strand at 1057.560 kb on + strand at 1057.560 kb on + strand at 1057.560 kb on + strand at 1057.561 kb on - strand at 1057.561 kb on - strand at 1057.561 kb on - strand at 1057.771 kb on + strand, within SM_b21531 at 1057.771 kb on + strand, within SM_b21531 at 1057.771 kb on + strand, within SM_b21531 at 1057.772 kb on - strand, within SM_b21531 at 1058.055 kb on + strand, within SM_b21531 at 1058.056 kb on - strand, within SM_b21531
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine remove 1,054,696 + SM_b21529 0.34 -0.6 1,054,696 + SM_b21529 0.34 +2.2 1,054,696 + SM_b21529 0.34 -0.0 1,054,697 - SM_b21529 0.34 -0.2 1,054,697 - SM_b21529 0.34 +0.2 1,054,697 - SM_b21529 0.34 -0.1 1,054,780 - SM_b21529 0.40 +0.9 1,054,843 + SM_b21529 0.44 -0.0 1,054,843 + SM_b21529 0.44 +0.1 1,054,844 - SM_b21529 0.44 -0.3 1,054,844 - +0.6 1,054,844 - SM_b21529 0.44 -0.5 1,054,844 - SM_b21529 0.44 +0.6 1,055,035 + SM_b21529 0.58 +0.3 1,055,036 - SM_b21529 0.58 -1.4 1,055,036 - SM_b21529 0.58 -0.2 1,055,037 + SM_b21529 0.58 -0.5 1,055,038 - SM_b21529 0.58 -0.7 1,055,056 - SM_b21529 0.60 -0.6 1,055,056 - SM_b21529 0.60 +0.8 1,055,056 - SM_b21529 0.60 +0.7 1,055,188 + SM_b21529 0.69 +0.5 1,055,188 + SM_b21529 0.69 -0.4 1,055,189 - SM_b21529 0.69 +0.6 1,055,189 - SM_b21529 0.69 +0.3 1,055,189 - SM_b21529 0.69 -0.2 1,055,191 + SM_b21529 0.69 +1.2 1,055,192 - SM_b21529 0.69 -1.4 1,055,306 - SM_b21529 0.77 +0.1 1,055,335 + SM_b21529 0.79 -0.3 1,055,335 + SM_b21529 0.79 -2.6 1,055,336 - SM_b21529 0.80 -0.6 1,055,336 - SM_b21529 0.80 +0.2 1,055,417 - SM_b21529 0.85 -0.4 1,055,429 - SM_b21529 0.86 +0.6 1,055,429 - SM_b21529 0.86 +0.3 1,055,450 - SM_b21529 0.88 -1.6 1,055,450 - SM_b21529 0.88 -0.7 1,055,450 - SM_b21529 0.88 +0.0 1,055,450 - SM_b21529 0.88 +2.1 1,055,587 + +1.1 1,055,588 - -0.1 1,055,588 - -0.8 1,055,596 + +1.4 1,055,599 + +0.2 1,055,599 + +0.1 1,055,599 + +0.3 1,055,600 - -0.6 1,055,638 + -1.0 1,055,638 + -0.7 1,055,936 + SM_b21530 0.15 +0.8 1,056,040 - SM_b21530 0.21 -0.0 1,056,389 + SM_b21530 0.41 +0.3 1,056,389 + SM_b21530 0.41 +0.3 1,056,389 + SM_b21530 0.41 +1.0 1,056,415 - SM_b21530 0.42 +0.5 1,056,415 - SM_b21530 0.42 +0.6 1,056,517 + SM_b21530 0.48 +1.1 1,056,517 + SM_b21530 0.48 -1.9 1,056,517 + SM_b21530 0.48 -0.1 1,056,517 + SM_b21530 0.48 +0.5 1,056,517 + +2.6 1,056,518 - SM_b21530 0.48 +0.4 1,056,518 - SM_b21530 0.48 -0.2 1,056,518 - SM_b21530 0.48 +0.2 1,056,522 + SM_b21530 0.48 +0.2 1,056,523 - SM_b21530 0.48 +0.5 1,056,907 - SM_b21530 0.70 -2.0 1,056,933 + SM_b21530 0.71 +0.8 1,057,123 - SM_b21530 0.82 +0.0 1,057,148 + SM_b21530 0.84 -1.0 1,057,149 - SM_b21530 0.84 +0.6 1,057,149 - SM_b21530 0.84 +0.8 1,057,206 + SM_b21530 0.87 -1.2 1,057,433 + +0.3 1,057,433 + -0.7 1,057,433 + -0.7 1,057,434 - +0.4 1,057,437 + -0.0 1,057,437 + -0.1 1,057,438 - -0.6 1,057,560 + -0.4 1,057,560 + +0.3 1,057,560 + +1.5 1,057,560 + +0.0 1,057,561 - -0.7 1,057,561 - +0.2 1,057,561 - -0.9 1,057,771 + SM_b21531 0.26 +0.2 1,057,771 + SM_b21531 0.26 +0.0 1,057,771 + SM_b21531 0.26 -0.4 1,057,772 - SM_b21531 0.26 +0.2 1,058,055 + SM_b21531 0.53 +0.6 1,058,056 - SM_b21531 0.54 +0.2
Or see this region's nucleotide sequence