Experiment: L-Lysine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21177 and SM_b21178 are separated by 166 nucleotides SM_b21178 and SM_b21179 are separated by 102 nucleotides
SM_b21177: SM_b21177 - phosphate uptake ABC transporter ATP-binding protein, at 923,271 to 924,110
_b21177
SM_b21178: SM_b21178 - membrane protein, methyltransferase, at 924,277 to 925,530
_b21178
SM_b21179: SM_b21179 - FAD-dependent glycerol-3-phosphate dehydrogenase, at 925,633 to 926,808
_b21179
Position (kb) 924
925
926 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 923.390 kb on - strand, within SM_b21177 at 923.390 kb on - strand, within SM_b21177 at 923.479 kb on + strand, within SM_b21177 at 923.479 kb on + strand, within SM_b21177 at 923.480 kb on - strand, within SM_b21177 at 923.501 kb on + strand, within SM_b21177 at 923.502 kb on - strand, within SM_b21177 at 923.781 kb on + strand, within SM_b21177 at 923.922 kb on + strand, within SM_b21177 at 923.923 kb on - strand, within SM_b21177 at 923.971 kb on - strand, within SM_b21177 at 924.014 kb on + strand, within SM_b21177 at 924.014 kb on + strand, within SM_b21177 at 924.040 kb on - strand at 924.091 kb on - strand at 924.590 kb on + strand, within SM_b21178 at 924.623 kb on + strand, within SM_b21178 at 924.645 kb on + strand, within SM_b21178 at 924.734 kb on + strand, within SM_b21178 at 924.735 kb on - strand, within SM_b21178 at 924.735 kb on - strand, within SM_b21178 at 924.792 kb on - strand, within SM_b21178 at 924.792 kb on - strand, within SM_b21178 at 924.792 kb on - strand, within SM_b21178 at 924.792 kb on - strand, within SM_b21178 at 924.792 kb on - strand, within SM_b21178 at 924.792 kb on - strand, within SM_b21178 at 924.792 kb on - strand, within SM_b21178 at 924.860 kb on + strand, within SM_b21178 at 924.860 kb on + strand, within SM_b21178 at 924.860 kb on + strand, within SM_b21178 at 924.860 kb on + strand, within SM_b21178 at 925.260 kb on + strand, within SM_b21178 at 925.339 kb on + strand, within SM_b21178 at 925.339 kb on + strand, within SM_b21178 at 925.339 kb on + strand, within SM_b21178 at 925.340 kb on - strand, within SM_b21178 at 925.340 kb on - strand, within SM_b21178 at 925.468 kb on - strand at 925.573 kb on + strand at 925.574 kb on - strand at 925.574 kb on - strand at 925.577 kb on + strand at 925.577 kb on + strand at 925.578 kb on - strand at 925.578 kb on - strand at 925.578 kb on - strand at 925.578 kb on - strand at 925.578 kb on - strand at 925.908 kb on - strand, within SM_b21179 at 926.062 kb on + strand, within SM_b21179 at 926.062 kb on + strand, within SM_b21179 at 926.367 kb on - strand, within SM_b21179 at 926.516 kb on - strand, within SM_b21179
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine remove 923,390 - SM_b21177 0.14 -1.7 923,390 - SM_b21177 0.14 -1.7 923,479 + SM_b21177 0.25 -6.1 923,479 + SM_b21177 0.25 -4.6 923,480 - SM_b21177 0.25 -3.0 923,501 + SM_b21177 0.27 -1.4 923,502 - SM_b21177 0.28 -4.1 923,781 + SM_b21177 0.61 -3.9 923,922 + SM_b21177 0.78 -2.7 923,923 - SM_b21177 0.78 -4.4 923,971 - SM_b21177 0.83 -1.0 924,014 + SM_b21177 0.88 -3.0 924,014 + SM_b21177 0.88 -3.2 924,040 - -4.6 924,091 - -3.9 924,590 + SM_b21178 0.25 -0.6 924,623 + SM_b21178 0.28 -0.1 924,645 + SM_b21178 0.29 -1.6 924,734 + SM_b21178 0.36 -0.6 924,735 - SM_b21178 0.37 +0.2 924,735 - SM_b21178 0.37 -2.0 924,792 - SM_b21178 0.41 -0.5 924,792 - SM_b21178 0.41 -0.2 924,792 - SM_b21178 0.41 -0.9 924,792 - SM_b21178 0.41 -0.3 924,792 - SM_b21178 0.41 -0.4 924,792 - SM_b21178 0.41 -0.5 924,792 - SM_b21178 0.41 -0.3 924,860 + SM_b21178 0.46 +0.3 924,860 + SM_b21178 0.46 -1.0 924,860 + SM_b21178 0.46 -1.1 924,860 + SM_b21178 0.46 -0.7 925,260 + SM_b21178 0.78 -0.4 925,339 + SM_b21178 0.85 +0.8 925,339 + SM_b21178 0.85 -0.2 925,339 + SM_b21178 0.85 +0.0 925,340 - SM_b21178 0.85 -2.1 925,340 - SM_b21178 0.85 -0.1 925,468 - -0.1 925,573 + +0.5 925,574 - -0.3 925,574 - -0.1 925,577 + -1.4 925,577 + -0.7 925,578 - -0.6 925,578 - -0.1 925,578 - +0.4 925,578 - -0.2 925,578 - +0.9 925,908 - SM_b21179 0.23 -1.2 926,062 + SM_b21179 0.36 -2.2 926,062 + SM_b21179 0.36 -0.4 926,367 - SM_b21179 0.62 +0.4 926,516 - SM_b21179 0.75 +0.9
Or see this region's nucleotide sequence