Experiment: L-Lysine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21663 and SM_b21664 are separated by 99 nucleotides SM_b21664 and SM_b21665 are separated by 57 nucleotides SM_b21665 and SM_b20829 are separated by 46 nucleotides SM_b20829 and SM_b20830 are separated by 259 nucleotides
SM_b21663: SM_b21663 - hypothetical protein, at 618,700 to 619,116
_b21663
SM_b21664: SM_b21664 - hypothetical protein, at 619,216 to 619,485
_b21664
SM_b21665: SM_b21665 - hypothetical protein, at 619,543 to 619,899
_b21665
SM_b20829: SM_b20829 - secreted calcium-binding protein, at 619,946 to 621,625
_b20829
SM_b20830: SM_b20830 - arabinose-5-phosphate isomerase, at 621,885 to 622,898
_b20830
Position (kb) 619
620
621
622 Strain fitness (log2 ratio) -1
0
1
2
3 at 618.954 kb on - strand, within SM_b21663 at 619.084 kb on + strand at 619.085 kb on - strand at 619.231 kb on + strand at 619.293 kb on - strand, within SM_b21664 at 619.402 kb on + strand, within SM_b21664 at 619.402 kb on + strand, within SM_b21664 at 619.402 kb on + strand, within SM_b21664 at 619.402 kb on + strand, within SM_b21664 at 619.403 kb on - strand, within SM_b21664 at 619.403 kb on - strand, within SM_b21664 at 619.435 kb on + strand, within SM_b21664 at 619.435 kb on + strand, within SM_b21664 at 619.435 kb on + strand, within SM_b21664 at 619.436 kb on - strand, within SM_b21664 at 619.436 kb on - strand, within SM_b21664 at 619.436 kb on - strand, within SM_b21664 at 619.436 kb on - strand, within SM_b21664 at 619.755 kb on + strand, within SM_b21665 at 619.756 kb on - strand, within SM_b21665 at 619.756 kb on - strand, within SM_b21665 at 619.892 kb on + strand at 619.893 kb on - strand at 619.935 kb on - strand at 619.978 kb on + strand at 619.978 kb on + strand at 619.979 kb on - strand at 620.067 kb on + strand at 620.123 kb on + strand, within SM_b20829 at 620.123 kb on + strand, within SM_b20829 at 620.124 kb on - strand, within SM_b20829 at 620.124 kb on - strand, within SM_b20829 at 620.124 kb on - strand, within SM_b20829 at 620.185 kb on + strand, within SM_b20829 at 620.186 kb on - strand, within SM_b20829 at 620.245 kb on + strand, within SM_b20829 at 620.246 kb on - strand, within SM_b20829 at 620.248 kb on + strand, within SM_b20829 at 620.288 kb on - strand, within SM_b20829 at 620.312 kb on + strand, within SM_b20829 at 620.312 kb on + strand, within SM_b20829 at 620.313 kb on - strand, within SM_b20829 at 620.421 kb on - strand, within SM_b20829 at 620.434 kb on + strand, within SM_b20829 at 620.435 kb on - strand, within SM_b20829 at 620.440 kb on + strand, within SM_b20829 at 620.441 kb on - strand, within SM_b20829 at 620.441 kb on - strand, within SM_b20829 at 620.473 kb on + strand, within SM_b20829 at 620.473 kb on + strand, within SM_b20829 at 620.473 kb on + strand at 620.474 kb on - strand, within SM_b20829 at 620.474 kb on - strand, within SM_b20829 at 620.551 kb on - strand, within SM_b20829 at 620.551 kb on - strand, within SM_b20829 at 620.561 kb on - strand, within SM_b20829 at 620.657 kb on + strand, within SM_b20829 at 620.657 kb on + strand, within SM_b20829 at 620.658 kb on - strand, within SM_b20829 at 620.660 kb on - strand, within SM_b20829 at 620.685 kb on - strand, within SM_b20829 at 620.758 kb on + strand, within SM_b20829 at 620.759 kb on - strand, within SM_b20829 at 620.765 kb on + strand, within SM_b20829 at 620.766 kb on - strand, within SM_b20829 at 620.796 kb on + strand, within SM_b20829 at 620.796 kb on + strand, within SM_b20829 at 620.846 kb on + strand, within SM_b20829 at 620.847 kb on - strand, within SM_b20829 at 620.847 kb on - strand, within SM_b20829 at 620.910 kb on + strand, within SM_b20829 at 620.910 kb on + strand, within SM_b20829 at 620.910 kb on + strand, within SM_b20829 at 620.911 kb on - strand, within SM_b20829 at 620.911 kb on - strand, within SM_b20829 at 621.012 kb on + strand, within SM_b20829 at 621.012 kb on + strand, within SM_b20829 at 621.013 kb on - strand, within SM_b20829 at 621.013 kb on - strand, within SM_b20829 at 621.013 kb on - strand, within SM_b20829 at 621.013 kb on - strand, within SM_b20829 at 621.057 kb on + strand, within SM_b20829 at 621.058 kb on - strand, within SM_b20829 at 621.138 kb on - strand, within SM_b20829 at 621.264 kb on - strand, within SM_b20829 at 621.264 kb on - strand, within SM_b20829 at 621.264 kb on - strand, within SM_b20829 at 621.264 kb on - strand, within SM_b20829 at 621.375 kb on - strand, within SM_b20829 at 621.375 kb on - strand, within SM_b20829 at 621.379 kb on + strand, within SM_b20829 at 621.380 kb on - strand, within SM_b20829 at 621.422 kb on - strand, within SM_b20829 at 621.500 kb on - strand at 621.534 kb on + strand at 621.535 kb on - strand at 621.538 kb on + strand at 621.539 kb on - strand at 621.539 kb on - strand at 621.539 kb on - strand at 621.539 kb on - strand at 621.539 kb on - strand at 621.630 kb on - strand at 621.669 kb on - strand at 621.673 kb on + strand at 621.673 kb on + strand at 621.673 kb on + strand at 621.674 kb on - strand at 621.674 kb on - strand at 621.682 kb on + strand at 621.795 kb on + strand at 621.826 kb on + strand at 622.153 kb on - strand, within SM_b20830
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine remove 618,954 - SM_b21663 0.61 +0.0 619,084 + -0.9 619,085 - +0.4 619,231 + +0.2 619,293 - SM_b21664 0.29 -0.1 619,402 + SM_b21664 0.69 +0.2 619,402 + SM_b21664 0.69 -0.7 619,402 + SM_b21664 0.69 +0.6 619,402 + SM_b21664 0.69 -0.2 619,403 - SM_b21664 0.69 +3.6 619,403 - SM_b21664 0.69 +2.6 619,435 + SM_b21664 0.81 -0.6 619,435 + SM_b21664 0.81 -1.7 619,435 + SM_b21664 0.81 +0.3 619,436 - SM_b21664 0.81 +0.9 619,436 - SM_b21664 0.81 +0.0 619,436 - SM_b21664 0.81 -0.5 619,436 - SM_b21664 0.81 +0.0 619,755 + SM_b21665 0.59 -0.1 619,756 - SM_b21665 0.60 +0.7 619,756 - SM_b21665 0.60 +0.1 619,892 + -0.2 619,893 - -0.3 619,935 - -0.1 619,978 + +0.0 619,978 + -0.1 619,979 - -0.8 620,067 + +0.7 620,123 + SM_b20829 0.11 +1.0 620,123 + SM_b20829 0.11 +0.1 620,124 - SM_b20829 0.11 -0.3 620,124 - SM_b20829 0.11 +0.1 620,124 - SM_b20829 0.11 +0.3 620,185 + SM_b20829 0.14 +0.7 620,186 - SM_b20829 0.14 +0.0 620,245 + SM_b20829 0.18 +0.3 620,246 - SM_b20829 0.18 -0.5 620,248 + SM_b20829 0.18 +0.1 620,288 - SM_b20829 0.20 -0.1 620,312 + SM_b20829 0.22 +0.2 620,312 + SM_b20829 0.22 +0.7 620,313 - SM_b20829 0.22 -0.4 620,421 - SM_b20829 0.28 -0.0 620,434 + SM_b20829 0.29 +0.3 620,435 - SM_b20829 0.29 +0.5 620,440 + SM_b20829 0.29 +1.2 620,441 - SM_b20829 0.29 +0.3 620,441 - SM_b20829 0.29 -1.3 620,473 + SM_b20829 0.31 +0.3 620,473 + SM_b20829 0.31 +0.3 620,473 + -0.9 620,474 - SM_b20829 0.31 +0.1 620,474 - SM_b20829 0.31 +1.2 620,551 - SM_b20829 0.36 -0.8 620,551 - SM_b20829 0.36 +0.9 620,561 - SM_b20829 0.37 +0.5 620,657 + SM_b20829 0.42 +0.2 620,657 + SM_b20829 0.42 +0.2 620,658 - SM_b20829 0.42 +0.2 620,660 - SM_b20829 0.42 -0.2 620,685 - SM_b20829 0.44 +0.8 620,758 + SM_b20829 0.48 +0.2 620,759 - SM_b20829 0.48 -0.1 620,765 + SM_b20829 0.49 -1.3 620,766 - SM_b20829 0.49 +0.5 620,796 + SM_b20829 0.51 +0.2 620,796 + SM_b20829 0.51 -0.6 620,846 + SM_b20829 0.54 -0.0 620,847 - SM_b20829 0.54 +1.2 620,847 - SM_b20829 0.54 -0.3 620,910 + SM_b20829 0.57 -0.0 620,910 + SM_b20829 0.57 +0.1 620,910 + SM_b20829 0.57 +0.0 620,911 - SM_b20829 0.57 -1.1 620,911 - SM_b20829 0.57 -0.3 621,012 + SM_b20829 0.63 -0.1 621,012 + SM_b20829 0.63 +1.5 621,013 - SM_b20829 0.64 -0.5 621,013 - SM_b20829 0.64 -0.5 621,013 - SM_b20829 0.64 -0.1 621,013 - SM_b20829 0.64 -0.0 621,057 + SM_b20829 0.66 +0.2 621,058 - SM_b20829 0.66 +0.5 621,138 - SM_b20829 0.71 -0.2 621,264 - SM_b20829 0.78 +0.2 621,264 - SM_b20829 0.78 -0.4 621,264 - SM_b20829 0.78 +0.4 621,264 - SM_b20829 0.78 -0.6 621,375 - SM_b20829 0.85 +0.7 621,375 - SM_b20829 0.85 +0.3 621,379 + SM_b20829 0.85 +0.3 621,380 - SM_b20829 0.85 +0.1 621,422 - SM_b20829 0.88 +0.7 621,500 - +0.3 621,534 + -0.7 621,535 - +0.4 621,538 + +0.1 621,539 - +0.3 621,539 - +0.5 621,539 - +0.0 621,539 - +0.4 621,539 - -0.5 621,630 - +0.2 621,669 - +0.7 621,673 + +0.5 621,673 + -0.2 621,673 + -0.2 621,674 - +1.0 621,674 - +0.2 621,682 + +0.5 621,795 + +0.2 621,826 + -0.5 622,153 - SM_b20830 0.26 -0.2
Or see this region's nucleotide sequence