Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20699

Experiment: L-Lysine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20698 and SM_b20699 overlap by 4 nucleotidesSM_b20699 and SM_b20700 are separated by 86 nucleotidesSM_b20700 and SM_b20701 are separated by 76 nucleotides SM_b20698: SM_b20698 - transporter, at 1,498,701 to 1,500,353 _b20698 SM_b20699: SM_b20699 - protein secretion protein, at 1,500,350 to 1,501,447 _b20699 SM_b20700: SM_b20700 - hypothetical protein, at 1,501,534 to 1,501,947 _b20700 SM_b20701: SM_b20701 - hypothetical protein, at 1,502,024 to 1,502,776 _b20701 Position (kb) 1500 1501 1502Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1499.687 kb on - strand, within SM_b20698at 1500.170 kb on - strand, within SM_b20698at 1500.208 kb on + strandat 1500.208 kb on + strandat 1500.209 kb on - strandat 1500.209 kb on - strandat 1500.209 kb on - strandat 1500.209 kb on - strandat 1500.224 kb on + strandat 1500.286 kb on - strandat 1500.318 kb on + strandat 1500.318 kb on + strandat 1500.319 kb on - strandat 1500.565 kb on - strand, within SM_b20699at 1500.644 kb on + strand, within SM_b20699at 1500.644 kb on + strand, within SM_b20699at 1500.645 kb on - strand, within SM_b20699at 1500.645 kb on - strand, within SM_b20699at 1500.645 kb on - strand, within SM_b20699at 1500.665 kb on - strand, within SM_b20699at 1500.981 kb on + strand, within SM_b20699at 1501.247 kb on - strand, within SM_b20699at 1501.263 kb on + strand, within SM_b20699at 1501.264 kb on - strand, within SM_b20699at 1501.631 kb on - strand, within SM_b20700at 1501.631 kb on - strand, within SM_b20700at 1501.631 kb on - strand, within SM_b20700at 1501.631 kb on - strand, within SM_b20700at 1501.679 kb on + strand, within SM_b20700at 1501.680 kb on - strand, within SM_b20700at 1501.680 kb on - strand, within SM_b20700at 1501.680 kb on - strand, within SM_b20700at 1501.740 kb on - strandat 1501.740 kb on - strand, within SM_b20700at 1501.740 kb on - strand, within SM_b20700at 1501.740 kb on - strand, within SM_b20700at 1501.793 kb on + strand, within SM_b20700at 1501.794 kb on - strand, within SM_b20700at 1501.853 kb on - strand, within SM_b20700at 1502.404 kb on - strand, within SM_b20701

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine
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1,499,687 - SM_b20698 0.60 +0.5
1,500,170 - SM_b20698 0.89 +0.1
1,500,208 + -0.3
1,500,208 + +0.3
1,500,209 - +0.7
1,500,209 - +1.1
1,500,209 - -0.1
1,500,209 - +0.4
1,500,224 + -0.6
1,500,286 - +0.2
1,500,318 + -0.7
1,500,318 + -0.7
1,500,319 - +0.1
1,500,565 - SM_b20699 0.20 -0.8
1,500,644 + SM_b20699 0.27 -0.5
1,500,644 + SM_b20699 0.27 -0.5
1,500,645 - SM_b20699 0.27 -4.9
1,500,645 - SM_b20699 0.27 +0.2
1,500,645 - SM_b20699 0.27 -0.6
1,500,665 - SM_b20699 0.29 -0.1
1,500,981 + SM_b20699 0.57 -0.3
1,501,247 - SM_b20699 0.82 +0.6
1,501,263 + SM_b20699 0.83 -1.5
1,501,264 - SM_b20699 0.83 -0.2
1,501,631 - SM_b20700 0.23 +0.1
1,501,631 - SM_b20700 0.23 -0.1
1,501,631 - SM_b20700 0.23 +0.4
1,501,631 - SM_b20700 0.23 +0.6
1,501,679 + SM_b20700 0.35 -0.4
1,501,680 - SM_b20700 0.35 +0.2
1,501,680 - SM_b20700 0.35 +0.1
1,501,680 - SM_b20700 0.35 -0.1
1,501,740 - -0.9
1,501,740 - SM_b20700 0.50 +0.6
1,501,740 - SM_b20700 0.50 -0.4
1,501,740 - SM_b20700 0.50 +0.6
1,501,793 + SM_b20700 0.63 +0.1
1,501,794 - SM_b20700 0.63 +0.1
1,501,853 - SM_b20700 0.77 +0.6
1,502,404 - SM_b20701 0.50 +0.0

Or see this region's nucleotide sequence