Experiment: L-Lysine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20698 and SM_b20699 overlap by 4 nucleotides SM_b20699 and SM_b20700 are separated by 86 nucleotides SM_b20700 and SM_b20701 are separated by 76 nucleotides
SM_b20698: SM_b20698 - transporter, at 1,498,701 to 1,500,353
_b20698
SM_b20699: SM_b20699 - protein secretion protein, at 1,500,350 to 1,501,447
_b20699
SM_b20700: SM_b20700 - hypothetical protein, at 1,501,534 to 1,501,947
_b20700
SM_b20701: SM_b20701 - hypothetical protein, at 1,502,024 to 1,502,776
_b20701
Position (kb)
1500
1501
1502 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 1499.687 kb on - strand, within SM_b20698 at 1500.170 kb on - strand, within SM_b20698 at 1500.208 kb on + strand at 1500.208 kb on + strand at 1500.209 kb on - strand at 1500.209 kb on - strand at 1500.209 kb on - strand at 1500.209 kb on - strand at 1500.224 kb on + strand at 1500.286 kb on - strand at 1500.318 kb on + strand at 1500.318 kb on + strand at 1500.319 kb on - strand at 1500.565 kb on - strand, within SM_b20699 at 1500.644 kb on + strand, within SM_b20699 at 1500.644 kb on + strand, within SM_b20699 at 1500.645 kb on - strand, within SM_b20699 at 1500.645 kb on - strand, within SM_b20699 at 1500.645 kb on - strand, within SM_b20699 at 1500.665 kb on - strand, within SM_b20699 at 1500.981 kb on + strand, within SM_b20699 at 1501.247 kb on - strand, within SM_b20699 at 1501.263 kb on + strand, within SM_b20699 at 1501.264 kb on - strand, within SM_b20699 at 1501.631 kb on - strand, within SM_b20700 at 1501.631 kb on - strand, within SM_b20700 at 1501.631 kb on - strand, within SM_b20700 at 1501.631 kb on - strand, within SM_b20700 at 1501.679 kb on + strand, within SM_b20700 at 1501.680 kb on - strand, within SM_b20700 at 1501.680 kb on - strand, within SM_b20700 at 1501.680 kb on - strand, within SM_b20700 at 1501.740 kb on - strand at 1501.740 kb on - strand, within SM_b20700 at 1501.740 kb on - strand, within SM_b20700 at 1501.740 kb on - strand, within SM_b20700 at 1501.793 kb on + strand, within SM_b20700 at 1501.794 kb on - strand, within SM_b20700 at 1501.853 kb on - strand, within SM_b20700 at 1502.404 kb on - strand, within SM_b20701
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine remove 1,499,687 - SM_b20698 0.60 +0.5 1,500,170 - SM_b20698 0.89 +0.1 1,500,208 + -0.3 1,500,208 + +0.3 1,500,209 - +0.7 1,500,209 - +1.1 1,500,209 - -0.1 1,500,209 - +0.4 1,500,224 + -0.6 1,500,286 - +0.2 1,500,318 + -0.7 1,500,318 + -0.7 1,500,319 - +0.1 1,500,565 - SM_b20699 0.20 -0.8 1,500,644 + SM_b20699 0.27 -0.5 1,500,644 + SM_b20699 0.27 -0.5 1,500,645 - SM_b20699 0.27 -4.9 1,500,645 - SM_b20699 0.27 +0.2 1,500,645 - SM_b20699 0.27 -0.6 1,500,665 - SM_b20699 0.29 -0.1 1,500,981 + SM_b20699 0.57 -0.3 1,501,247 - SM_b20699 0.82 +0.6 1,501,263 + SM_b20699 0.83 -1.5 1,501,264 - SM_b20699 0.83 -0.2 1,501,631 - SM_b20700 0.23 +0.1 1,501,631 - SM_b20700 0.23 -0.1 1,501,631 - SM_b20700 0.23 +0.4 1,501,631 - SM_b20700 0.23 +0.6 1,501,679 + SM_b20700 0.35 -0.4 1,501,680 - SM_b20700 0.35 +0.2 1,501,680 - SM_b20700 0.35 +0.1 1,501,680 - SM_b20700 0.35 -0.1 1,501,740 - -0.9 1,501,740 - SM_b20700 0.50 +0.6 1,501,740 - SM_b20700 0.50 -0.4 1,501,740 - SM_b20700 0.50 +0.6 1,501,793 + SM_b20700 0.63 +0.1 1,501,794 - SM_b20700 0.63 +0.1 1,501,853 - SM_b20700 0.77 +0.6 1,502,404 - SM_b20701 0.50 +0.0
Or see this region's nucleotide sequence