Experiment: L-Lysine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20253 and SM_b20254 are separated by 208 nucleotides SM_b20254 and SM_b20255 are separated by 74 nucleotides SM_b20255 and SM_b20256 are separated by 131 nucleotides SM_b20256 and SM_b20257 are separated by 182 nucleotides
SM_b20253: SM_b20253 - hypothetical protein, at 259,295 to 260,200
_b20253
SM_b20254: SM_b20254 - hypothetical protein, at 260,409 to 260,684
_b20254
SM_b20255: SM_b20255 - hypothetical protein, at 260,759 to 261,310
_b20255
SM_b20256: SM_b20256 - hypothetical protein, at 261,442 to 261,891
_b20256
SM_b20257: SM_b20257 - adenylate cyclase, at 262,074 to 263,132
_b20257
Position (kb) 260
261
262 Strain fitness (log2 ratio) -2
-1
0
1 at 259.899 kb on + strand, within SM_b20253 at 259.900 kb on - strand, within SM_b20253 at 259.900 kb on - strand, within SM_b20253 at 259.948 kb on - strand, within SM_b20253 at 260.053 kb on + strand, within SM_b20253 at 260.152 kb on - strand at 260.200 kb on + strand at 260.316 kb on + strand at 260.317 kb on - strand at 260.367 kb on + strand at 260.368 kb on - strand at 260.760 kb on + strand at 260.760 kb on + strand at 260.760 kb on + strand at 260.879 kb on + strand, within SM_b20255 at 260.879 kb on + strand, within SM_b20255 at 260.879 kb on + strand, within SM_b20255 at 261.071 kb on + strand, within SM_b20255 at 261.071 kb on + strand, within SM_b20255 at 261.355 kb on + strand at 261.674 kb on + strand, within SM_b20256 at 261.674 kb on + strand, within SM_b20256 at 261.736 kb on + strand, within SM_b20256 at 261.749 kb on + strand, within SM_b20256 at 261.964 kb on + strand at 261.965 kb on - strand at 262.062 kb on + strand at 262.063 kb on - strand at 262.063 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine remove 259,899 + SM_b20253 0.67 +0.4 259,900 - SM_b20253 0.67 +0.1 259,900 - SM_b20253 0.67 -0.3 259,948 - SM_b20253 0.72 +0.7 260,053 + SM_b20253 0.84 -0.6 260,152 - +0.3 260,200 + +1.0 260,316 + -0.4 260,317 - -0.5 260,367 + -0.0 260,368 - -0.2 260,760 + -0.9 260,760 + -0.0 260,760 + +0.4 260,879 + SM_b20255 0.22 +0.3 260,879 + SM_b20255 0.22 +0.5 260,879 + SM_b20255 0.22 -0.1 261,071 + SM_b20255 0.57 +0.0 261,071 + SM_b20255 0.57 -0.4 261,355 + -0.6 261,674 + SM_b20256 0.52 -2.3 261,674 + SM_b20256 0.52 -1.1 261,736 + SM_b20256 0.65 -0.5 261,749 + SM_b20256 0.68 -0.4 261,964 + +0.1 261,965 - +0.7 262,062 + +0.1 262,063 - -1.5 262,063 - -1.0
Or see this region's nucleotide sequence