Experiment: D-Glucose-6-Phosphate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS04575 and LRK54_RS04580 overlap by 1 nucleotides LRK54_RS04580 and LRK54_RS04585 are separated by 110 nucleotides LRK54_RS04585 and LRK54_RS04590 are separated by 83 nucleotides
LRK54_RS04575: LRK54_RS04575 - transcription antitermination factor NusB, at 974,816 to 975,268
_RS04575
LRK54_RS04580: LRK54_RS04580 - 6,7-dimethyl-8-ribityllumazine synthase, at 975,268 to 975,729
_RS04580
LRK54_RS04585: LRK54_RS04585 - muramoyltetrapeptide carboxypeptidase, at 975,840 to 976,784
_RS04585
LRK54_RS04590: LRK54_RS04590 - 3,4-dihydroxy-2-butanone-4-phosphate synthase, at 976,868 to 977,959
_RS04590
Position (kb) 975
976
977 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 976.027 kb on + strand, within LRK54_RS04585 at 976.027 kb on + strand, within LRK54_RS04585 at 976.039 kb on + strand, within LRK54_RS04585 at 976.039 kb on + strand, within LRK54_RS04585 at 976.040 kb on - strand, within LRK54_RS04585 at 976.120 kb on + strand, within LRK54_RS04585 at 976.120 kb on + strand, within LRK54_RS04585 at 976.121 kb on - strand, within LRK54_RS04585 at 976.121 kb on - strand, within LRK54_RS04585 at 976.121 kb on - strand, within LRK54_RS04585 at 976.168 kb on + strand, within LRK54_RS04585 at 976.168 kb on + strand, within LRK54_RS04585 at 976.168 kb on + strand, within LRK54_RS04585 at 976.168 kb on + strand, within LRK54_RS04585 at 976.168 kb on + strand, within LRK54_RS04585 at 976.168 kb on + strand, within LRK54_RS04585 at 976.168 kb on + strand, within LRK54_RS04585 at 976.168 kb on + strand, within LRK54_RS04585 at 976.169 kb on - strand, within LRK54_RS04585 at 976.169 kb on - strand, within LRK54_RS04585 at 976.169 kb on - strand, within LRK54_RS04585 at 976.169 kb on - strand, within LRK54_RS04585 at 976.169 kb on - strand, within LRK54_RS04585 at 976.169 kb on - strand, within LRK54_RS04585 at 976.169 kb on - strand, within LRK54_RS04585 at 976.169 kb on - strand, within LRK54_RS04585 at 976.213 kb on + strand, within LRK54_RS04585 at 976.213 kb on + strand, within LRK54_RS04585 at 976.213 kb on + strand, within LRK54_RS04585 at 976.213 kb on + strand, within LRK54_RS04585 at 976.214 kb on - strand, within LRK54_RS04585 at 976.214 kb on - strand, within LRK54_RS04585 at 976.214 kb on - strand, within LRK54_RS04585 at 976.214 kb on - strand, within LRK54_RS04585 at 976.214 kb on - strand, within LRK54_RS04585 at 976.214 kb on - strand, within LRK54_RS04585 at 976.215 kb on - strand, within LRK54_RS04585 at 976.481 kb on + strand, within LRK54_RS04585 at 976.516 kb on + strand, within LRK54_RS04585 at 976.516 kb on + strand, within LRK54_RS04585 at 976.516 kb on + strand, within LRK54_RS04585 at 976.517 kb on - strand, within LRK54_RS04585 at 976.517 kb on - strand, within LRK54_RS04585 at 976.643 kb on - strand, within LRK54_RS04585 at 976.813 kb on + strand at 976.813 kb on + strand at 976.813 kb on + strand at 976.813 kb on + strand at 976.814 kb on - strand at 976.814 kb on - strand at 976.814 kb on - strand at 976.875 kb on + strand at 976.875 kb on + strand at 976.875 kb on + strand at 976.875 kb on + strand at 976.875 kb on + strand at 976.875 kb on + strand at 976.875 kb on + strand at 976.875 kb on + strand at 976.876 kb on - strand at 976.876 kb on - strand at 976.876 kb on - strand at 976.876 kb on - strand at 976.876 kb on - strand at 976.876 kb on - strand at 976.876 kb on - strand at 976.876 kb on - strand at 976.876 kb on - strand at 976.876 kb on - strand at 976.876 kb on - strand at 976.876 kb on - strand at 976.876 kb on - strand at 976.876 kb on - strand at 976.876 kb on - strand at 976.876 kb on - strand at 976.876 kb on - strand at 977.055 kb on - strand, within LRK54_RS04590 at 977.253 kb on + strand, within LRK54_RS04590 at 977.253 kb on + strand, within LRK54_RS04590 at 977.253 kb on + strand, within LRK54_RS04590 at 977.253 kb on + strand, within LRK54_RS04590 at 977.254 kb on - strand, within LRK54_RS04590 at 977.254 kb on - strand, within LRK54_RS04590
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate 20 mM remove 976,027 + LRK54_RS04585 0.20 -1.2 976,027 + LRK54_RS04585 0.20 +0.0 976,039 + LRK54_RS04585 0.21 -2.3 976,039 + LRK54_RS04585 0.21 -1.0 976,040 - LRK54_RS04585 0.21 -3.6 976,120 + LRK54_RS04585 0.30 -2.9 976,120 + LRK54_RS04585 0.30 -1.9 976,121 - LRK54_RS04585 0.30 -1.9 976,121 - LRK54_RS04585 0.30 -1.6 976,121 - LRK54_RS04585 0.30 -1.7 976,168 + LRK54_RS04585 0.35 -2.6 976,168 + LRK54_RS04585 0.35 -1.0 976,168 + LRK54_RS04585 0.35 -1.0 976,168 + LRK54_RS04585 0.35 -2.0 976,168 + LRK54_RS04585 0.35 -2.7 976,168 + LRK54_RS04585 0.35 -1.0 976,168 + LRK54_RS04585 0.35 -1.9 976,168 + LRK54_RS04585 0.35 -0.7 976,169 - LRK54_RS04585 0.35 -1.4 976,169 - LRK54_RS04585 0.35 -2.1 976,169 - LRK54_RS04585 0.35 -1.0 976,169 - LRK54_RS04585 0.35 -1.9 976,169 - LRK54_RS04585 0.35 -1.7 976,169 - LRK54_RS04585 0.35 -1.4 976,169 - LRK54_RS04585 0.35 -1.6 976,169 - LRK54_RS04585 0.35 -1.2 976,213 + LRK54_RS04585 0.39 +0.0 976,213 + LRK54_RS04585 0.39 -4.0 976,213 + LRK54_RS04585 0.39 -0.7 976,213 + LRK54_RS04585 0.39 -2.0 976,214 - LRK54_RS04585 0.40 -2.1 976,214 - LRK54_RS04585 0.40 +0.0 976,214 - LRK54_RS04585 0.40 +0.6 976,214 - LRK54_RS04585 0.40 -2.8 976,214 - LRK54_RS04585 0.40 -1.6 976,214 - LRK54_RS04585 0.40 -3.7 976,215 - LRK54_RS04585 0.40 -0.9 976,481 + LRK54_RS04585 0.68 -1.9 976,516 + LRK54_RS04585 0.72 -2.1 976,516 + LRK54_RS04585 0.72 -2.6 976,516 + LRK54_RS04585 0.72 +1.6 976,517 - LRK54_RS04585 0.72 -0.7 976,517 - LRK54_RS04585 0.72 -2.3 976,643 - LRK54_RS04585 0.85 -2.0 976,813 + +0.1 976,813 + +0.5 976,813 + +0.1 976,813 + -0.2 976,814 - +0.0 976,814 - +0.6 976,814 - -0.1 976,875 + -0.2 976,875 + +0.6 976,875 + -1.3 976,875 + -0.6 976,875 + -0.4 976,875 + -0.2 976,875 + -0.1 976,875 + -0.2 976,876 - +1.3 976,876 - +0.4 976,876 - -0.0 976,876 - +0.1 976,876 - -0.4 976,876 - -1.7 976,876 - -1.1 976,876 - +0.1 976,876 - +0.1 976,876 - +0.4 976,876 - -0.0 976,876 - +0.7 976,876 - -0.9 976,876 - -2.1 976,876 - +0.5 976,876 - -0.2 976,876 - -1.0 977,055 - LRK54_RS04590 0.17 +0.0 977,253 + LRK54_RS04590 0.35 -0.4 977,253 + LRK54_RS04590 0.35 -1.7 977,253 + LRK54_RS04590 0.35 -0.7 977,253 + LRK54_RS04590 0.35 -0.4 977,254 - LRK54_RS04590 0.35 +1.5 977,254 - LRK54_RS04590 0.35 -1.2
Or see this region's nucleotide sequence