Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS02385

Experiment: D-Glucose-6-Phosphate 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS02380 and LRK54_RS02385 are separated by 19 nucleotidesLRK54_RS02385 and LRK54_RS02390 are separated by 3 nucleotides LRK54_RS02380: LRK54_RS02380 - argininosuccinate lyase, at 517,097 to 518,392 _RS02380 LRK54_RS02385: LRK54_RS02385 - N-acetyl-gamma-glutamyl-phosphate reductase, at 518,412 to 519,365 _RS02385 LRK54_RS02390: LRK54_RS02390 - acetylglutamate kinase, at 519,369 to 520,688 _RS02390 Position (kb) 518 519 520Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 517.440 kb on + strand, within LRK54_RS02380at 517.500 kb on + strand, within LRK54_RS02380at 517.500 kb on + strand, within LRK54_RS02380at 517.500 kb on + strand, within LRK54_RS02380at 517.500 kb on + strand, within LRK54_RS02380at 517.501 kb on - strand, within LRK54_RS02380at 517.501 kb on - strand, within LRK54_RS02380at 517.501 kb on - strand, within LRK54_RS02380at 517.501 kb on - strand, within LRK54_RS02380at 517.501 kb on - strand, within LRK54_RS02380at 517.569 kb on + strand, within LRK54_RS02380at 517.569 kb on + strand, within LRK54_RS02380at 517.570 kb on - strand, within LRK54_RS02380at 517.570 kb on - strand, within LRK54_RS02380at 517.570 kb on - strand, within LRK54_RS02380at 517.570 kb on - strand, within LRK54_RS02380at 517.587 kb on - strand, within LRK54_RS02380at 517.710 kb on + strand, within LRK54_RS02380at 517.710 kb on + strand, within LRK54_RS02380at 517.710 kb on + strand, within LRK54_RS02380at 517.710 kb on + strand, within LRK54_RS02380at 517.710 kb on + strand, within LRK54_RS02380at 517.711 kb on - strand, within LRK54_RS02380at 517.711 kb on - strand, within LRK54_RS02380at 517.929 kb on + strand, within LRK54_RS02380at 518.413 kb on + strandat 518.414 kb on - strandat 518.414 kb on - strandat 518.431 kb on + strandat 518.431 kb on + strandat 518.431 kb on + strandat 518.431 kb on + strandat 518.432 kb on - strandat 518.432 kb on - strandat 518.432 kb on - strandat 518.432 kb on - strandat 518.635 kb on + strand, within LRK54_RS02385at 518.689 kb on + strand, within LRK54_RS02385at 518.689 kb on + strand, within LRK54_RS02385at 518.689 kb on + strand, within LRK54_RS02385at 518.689 kb on + strand, within LRK54_RS02385at 518.689 kb on + strand, within LRK54_RS02385at 518.689 kb on + strand, within LRK54_RS02385at 518.689 kb on + strand, within LRK54_RS02385at 518.689 kb on + strand, within LRK54_RS02385at 518.689 kb on + strand, within LRK54_RS02385at 518.689 kb on + strand, within LRK54_RS02385at 518.690 kb on - strand, within LRK54_RS02385at 518.690 kb on - strand, within LRK54_RS02385at 518.690 kb on - strand, within LRK54_RS02385at 518.690 kb on - strand, within LRK54_RS02385at 518.690 kb on - strand, within LRK54_RS02385at 518.690 kb on - strand, within LRK54_RS02385at 518.806 kb on + strand, within LRK54_RS02385at 518.806 kb on + strand, within LRK54_RS02385at 518.956 kb on + strand, within LRK54_RS02385at 518.956 kb on + strand, within LRK54_RS02385at 518.957 kb on - strand, within LRK54_RS02385at 518.957 kb on - strand, within LRK54_RS02385at 519.022 kb on + strand, within LRK54_RS02385at 519.022 kb on + strand, within LRK54_RS02385at 519.022 kb on + strand, within LRK54_RS02385at 519.022 kb on + strand, within LRK54_RS02385at 519.022 kb on + strand, within LRK54_RS02385at 519.022 kb on + strand, within LRK54_RS02385at 519.023 kb on - strand, within LRK54_RS02385at 519.023 kb on - strand, within LRK54_RS02385at 519.025 kb on + strand, within LRK54_RS02385at 519.025 kb on + strand, within LRK54_RS02385at 519.025 kb on + strand, within LRK54_RS02385at 519.025 kb on + strand, within LRK54_RS02385at 519.025 kb on + strand, within LRK54_RS02385at 519.026 kb on - strand, within LRK54_RS02385at 519.026 kb on - strand, within LRK54_RS02385at 519.026 kb on - strand, within LRK54_RS02385at 519.026 kb on - strand, within LRK54_RS02385at 519.026 kb on - strand, within LRK54_RS02385at 519.026 kb on - strand, within LRK54_RS02385at 519.026 kb on - strand, within LRK54_RS02385at 519.026 kb on - strand, within LRK54_RS02385at 519.046 kb on + strand, within LRK54_RS02385at 519.047 kb on - strand, within LRK54_RS02385at 519.190 kb on + strand, within LRK54_RS02385at 519.190 kb on + strand, within LRK54_RS02385at 519.190 kb on + strand, within LRK54_RS02385at 519.190 kb on + strand, within LRK54_RS02385at 519.191 kb on - strand, within LRK54_RS02385at 519.191 kb on - strand, within LRK54_RS02385at 519.342 kb on + strandat 519.342 kb on + strandat 519.343 kb on - strandat 519.496 kb on + strandat 519.496 kb on + strandat 519.496 kb on + strandat 519.497 kb on - strandat 519.497 kb on - strandat 519.497 kb on - strandat 519.499 kb on + strandat 519.499 kb on + strandat 519.499 kb on + strandat 519.500 kb on - strandat 519.500 kb on - strandat 519.500 kb on - strandat 519.500 kb on - strandat 519.632 kb on - strand, within LRK54_RS02390at 519.673 kb on + strand, within LRK54_RS02390at 519.673 kb on + strand, within LRK54_RS02390at 519.673 kb on + strand, within LRK54_RS02390at 519.673 kb on + strand, within LRK54_RS02390at 519.673 kb on + strand, within LRK54_RS02390at 519.673 kb on + strand, within LRK54_RS02390at 519.674 kb on - strand, within LRK54_RS02390at 519.674 kb on - strand, within LRK54_RS02390at 519.674 kb on - strand, within LRK54_RS02390at 519.674 kb on - strand, within LRK54_RS02390at 519.688 kb on + strand, within LRK54_RS02390at 519.688 kb on + strand, within LRK54_RS02390at 519.688 kb on + strand, within LRK54_RS02390at 519.688 kb on + strand, within LRK54_RS02390at 519.688 kb on + strand, within LRK54_RS02390at 519.688 kb on + strand, within LRK54_RS02390at 519.689 kb on - strand, within LRK54_RS02390at 519.689 kb on - strand, within LRK54_RS02390at 519.689 kb on - strand, within LRK54_RS02390at 519.689 kb on - strand, within LRK54_RS02390at 519.689 kb on - strand, within LRK54_RS02390at 519.689 kb on - strand, within LRK54_RS02390at 519.689 kb on - strand, within LRK54_RS02390at 519.718 kb on + strand, within LRK54_RS02390at 519.719 kb on - strand, within LRK54_RS02390at 519.719 kb on - strand, within LRK54_RS02390at 519.998 kb on + strand, within LRK54_RS02390at 520.075 kb on + strand, within LRK54_RS02390at 520.075 kb on + strand, within LRK54_RS02390at 520.075 kb on + strand, within LRK54_RS02390at 520.075 kb on + strand, within LRK54_RS02390at 520.075 kb on + strand, within LRK54_RS02390at 520.075 kb on + strand, within LRK54_RS02390at 520.075 kb on + strand, within LRK54_RS02390at 520.076 kb on - strand, within LRK54_RS02390at 520.076 kb on - strand, within LRK54_RS02390at 520.076 kb on - strand, within LRK54_RS02390at 520.076 kb on - strand, within LRK54_RS02390at 520.076 kb on - strand, within LRK54_RS02390at 520.076 kb on - strand, within LRK54_RS02390at 520.076 kb on - strand, within LRK54_RS02390at 520.076 kb on - strand, within LRK54_RS02390at 520.261 kb on + strand, within LRK54_RS02390at 520.261 kb on + strand, within LRK54_RS02390at 520.262 kb on - strand, within LRK54_RS02390at 520.262 kb on - strand, within LRK54_RS02390at 520.262 kb on - strand, within LRK54_RS02390at 520.262 kb on - strand, within LRK54_RS02390at 520.262 kb on - strand, within LRK54_RS02390at 520.262 kb on - strand, within LRK54_RS02390

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate 20 mM
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517,440 + LRK54_RS02380 0.26 -2.4
517,500 + LRK54_RS02380 0.31 -2.2
517,500 + LRK54_RS02380 0.31 -1.2
517,500 + LRK54_RS02380 0.31 +0.0
517,500 + LRK54_RS02380 0.31 -2.8
517,501 - LRK54_RS02380 0.31 -1.5
517,501 - LRK54_RS02380 0.31 -1.9
517,501 - LRK54_RS02380 0.31 +0.6
517,501 - LRK54_RS02380 0.31 -0.7
517,501 - LRK54_RS02380 0.31 -1.0
517,569 + LRK54_RS02380 0.36 -1.4
517,569 + LRK54_RS02380 0.36 -4.1
517,570 - LRK54_RS02380 0.36 -1.2
517,570 - LRK54_RS02380 0.36 -0.4
517,570 - LRK54_RS02380 0.36 -0.2
517,570 - LRK54_RS02380 0.36 -2.6
517,587 - LRK54_RS02380 0.38 -1.9
517,710 + LRK54_RS02380 0.47 -2.0
517,710 + LRK54_RS02380 0.47 -2.8
517,710 + LRK54_RS02380 0.47 +0.0
517,710 + LRK54_RS02380 0.47 -0.4
517,710 + LRK54_RS02380 0.47 -0.8
517,711 - LRK54_RS02380 0.47 -2.1
517,711 - LRK54_RS02380 0.47 -1.9
517,929 + LRK54_RS02380 0.64 -2.6
518,413 + -0.2
518,414 - +0.9
518,414 - +1.3
518,431 + -1.9
518,431 + -1.8
518,431 + -0.7
518,431 + -2.1
518,432 - -1.9
518,432 - -4.1
518,432 - -2.2
518,432 - -1.7
518,635 + LRK54_RS02385 0.23 -1.9
518,689 + LRK54_RS02385 0.29 -0.7
518,689 + LRK54_RS02385 0.29 -2.1
518,689 + LRK54_RS02385 0.29 -2.2
518,689 + LRK54_RS02385 0.29 -0.7
518,689 + LRK54_RS02385 0.29 -2.3
518,689 + LRK54_RS02385 0.29 -2.0
518,689 + LRK54_RS02385 0.29 -1.9
518,689 + LRK54_RS02385 0.29 -3.4
518,689 + LRK54_RS02385 0.29 -3.0
518,689 + LRK54_RS02385 0.29 +0.6
518,690 - LRK54_RS02385 0.29 -3.2
518,690 - LRK54_RS02385 0.29 -1.2
518,690 - LRK54_RS02385 0.29 +0.0
518,690 - LRK54_RS02385 0.29 -1.6
518,690 - LRK54_RS02385 0.29 -2.4
518,690 - LRK54_RS02385 0.29 -2.7
518,806 + LRK54_RS02385 0.41 -1.0
518,806 + LRK54_RS02385 0.41 -1.0
518,956 + LRK54_RS02385 0.57 -1.7
518,956 + LRK54_RS02385 0.57 +1.6
518,957 - LRK54_RS02385 0.57 -2.9
518,957 - LRK54_RS02385 0.57 -1.4
519,022 + LRK54_RS02385 0.64 -1.2
519,022 + LRK54_RS02385 0.64 -3.7
519,022 + LRK54_RS02385 0.64 -2.4
519,022 + LRK54_RS02385 0.64 -3.3
519,022 + LRK54_RS02385 0.64 -3.5
519,022 + LRK54_RS02385 0.64 -2.9
519,023 - LRK54_RS02385 0.64 -0.4
519,023 - LRK54_RS02385 0.64 -3.8
519,025 + LRK54_RS02385 0.64 -2.4
519,025 + LRK54_RS02385 0.64 -2.9
519,025 + LRK54_RS02385 0.64 -2.9
519,025 + LRK54_RS02385 0.64 -1.0
519,025 + LRK54_RS02385 0.64 -2.3
519,026 - LRK54_RS02385 0.64 -1.2
519,026 - LRK54_RS02385 0.64 -2.5
519,026 - LRK54_RS02385 0.64 -2.6
519,026 - LRK54_RS02385 0.64 -2.5
519,026 - LRK54_RS02385 0.64 -0.4
519,026 - LRK54_RS02385 0.64 -1.4
519,026 - LRK54_RS02385 0.64 -1.4
519,026 - LRK54_RS02385 0.64 -2.9
519,046 + LRK54_RS02385 0.66 -1.0
519,047 - LRK54_RS02385 0.67 -3.6
519,190 + LRK54_RS02385 0.82 -2.8
519,190 + LRK54_RS02385 0.82 -1.7
519,190 + LRK54_RS02385 0.82 -1.0
519,190 + LRK54_RS02385 0.82 -0.7
519,191 - LRK54_RS02385 0.82 -2.3
519,191 - LRK54_RS02385 0.82 -1.0
519,342 + +0.0
519,342 + -0.6
519,343 - -0.2
519,496 + -1.6
519,496 + -1.3
519,496 + +0.0
519,497 - -3.5
519,497 - -1.4
519,497 - -1.2
519,499 + -2.4
519,499 + +0.6
519,499 + -0.6
519,500 - -1.7
519,500 - -1.7
519,500 - +0.0
519,500 - -2.0
519,632 - LRK54_RS02390 0.20 +1.6
519,673 + LRK54_RS02390 0.23 +1.0
519,673 + LRK54_RS02390 0.23 -1.0
519,673 + LRK54_RS02390 0.23 -2.0
519,673 + LRK54_RS02390 0.23 -2.5
519,673 + LRK54_RS02390 0.23 +0.0
519,673 + LRK54_RS02390 0.23 -1.7
519,674 - LRK54_RS02390 0.23 -1.9
519,674 - LRK54_RS02390 0.23 -1.0
519,674 - LRK54_RS02390 0.23 -1.6
519,674 - LRK54_RS02390 0.23 -0.4
519,688 + LRK54_RS02390 0.24 -1.7
519,688 + LRK54_RS02390 0.24 +1.6
519,688 + LRK54_RS02390 0.24 +0.0
519,688 + LRK54_RS02390 0.24 -0.3
519,688 + LRK54_RS02390 0.24 -3.2
519,688 + LRK54_RS02390 0.24 -1.8
519,689 - LRK54_RS02390 0.24 -2.7
519,689 - LRK54_RS02390 0.24 +0.6
519,689 - LRK54_RS02390 0.24 -1.1
519,689 - LRK54_RS02390 0.24 -1.0
519,689 - LRK54_RS02390 0.24 -2.7
519,689 - LRK54_RS02390 0.24 -2.0
519,689 - LRK54_RS02390 0.24 -0.7
519,718 + LRK54_RS02390 0.26 -0.7
519,719 - LRK54_RS02390 0.27 -1.6
519,719 - LRK54_RS02390 0.27 -1.9
519,998 + LRK54_RS02390 0.48 -2.2
520,075 + LRK54_RS02390 0.53 -1.4
520,075 + LRK54_RS02390 0.53 -1.2
520,075 + LRK54_RS02390 0.53 +1.0
520,075 + LRK54_RS02390 0.53 -2.2
520,075 + LRK54_RS02390 0.53 -3.1
520,075 + LRK54_RS02390 0.53 -2.7
520,075 + LRK54_RS02390 0.53 -1.9
520,076 - LRK54_RS02390 0.54 +0.6
520,076 - LRK54_RS02390 0.54 -4.4
520,076 - LRK54_RS02390 0.54 -1.2
520,076 - LRK54_RS02390 0.54 +0.0
520,076 - LRK54_RS02390 0.54 -1.7
520,076 - LRK54_RS02390 0.54 -0.4
520,076 - LRK54_RS02390 0.54 -1.7
520,076 - LRK54_RS02390 0.54 -1.4
520,261 + LRK54_RS02390 0.68 -1.6
520,261 + LRK54_RS02390 0.68 -1.7
520,262 - LRK54_RS02390 0.68 -1.8
520,262 - LRK54_RS02390 0.68 -1.6
520,262 - LRK54_RS02390 0.68 -0.4
520,262 - LRK54_RS02390 0.68 -3.2
520,262 - LRK54_RS02390 0.68 -0.6
520,262 - LRK54_RS02390 0.68 -1.6

Or see this region's nucleotide sequence