Experiment: Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_20710 and IAI47_20715 are separated by 392 nucleotides IAI47_20715 and IAI47_20720 are separated by 16 nucleotides
IAI47_20710: IAI47_20710 - FAD-dependent oxidoreductase, at 389,792 to 390,736
_20710
IAI47_20715: IAI47_20715 - helix-turn-helix transcriptional regulator, at 391,129 to 391,443
_20715
IAI47_20720: IAI47_20720 - alkene reductase, at 391,460 to 392,578
_20720
Position (kb) 391
392 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 390.201 kb on - strand, within IAI47_20710 at 390.280 kb on + strand, within IAI47_20710 at 390.281 kb on + strand, within IAI47_20710 at 390.281 kb on + strand, within IAI47_20710 at 390.282 kb on - strand, within IAI47_20710 at 390.282 kb on - strand, within IAI47_20710 at 390.302 kb on + strand, within IAI47_20710 at 390.302 kb on + strand, within IAI47_20710 at 390.303 kb on - strand, within IAI47_20710 at 390.303 kb on - strand, within IAI47_20710 at 390.303 kb on - strand, within IAI47_20710 at 390.303 kb on - strand, within IAI47_20710 at 390.303 kb on - strand, within IAI47_20710 at 390.363 kb on + strand, within IAI47_20710 at 390.363 kb on + strand, within IAI47_20710 at 390.364 kb on - strand, within IAI47_20710 at 390.467 kb on - strand, within IAI47_20710 at 390.494 kb on - strand, within IAI47_20710 at 390.776 kb on + strand at 390.777 kb on - strand at 390.777 kb on - strand at 390.777 kb on - strand at 390.777 kb on - strand at 390.777 kb on - strand at 390.795 kb on + strand at 390.795 kb on + strand at 390.797 kb on + strand at 390.797 kb on + strand at 390.797 kb on + strand at 390.797 kb on + strand at 390.797 kb on + strand at 390.797 kb on + strand at 390.797 kb on + strand at 390.798 kb on - strand at 390.798 kb on - strand at 390.798 kb on - strand at 390.798 kb on - strand at 390.798 kb on - strand at 390.798 kb on - strand at 390.798 kb on - strand at 390.865 kb on + strand at 390.865 kb on + strand at 390.865 kb on + strand at 390.865 kb on + strand at 390.866 kb on - strand at 390.866 kb on - strand at 390.889 kb on + strand at 390.890 kb on - strand at 390.890 kb on - strand at 390.890 kb on - strand at 390.897 kb on + strand at 390.897 kb on + strand at 390.897 kb on + strand at 390.898 kb on - strand at 390.916 kb on + strand at 390.916 kb on + strand at 390.916 kb on + strand at 390.916 kb on + strand at 390.916 kb on + strand at 390.917 kb on - strand at 390.917 kb on - strand at 390.917 kb on - strand at 390.917 kb on - strand at 390.927 kb on - strand at 390.943 kb on + strand at 390.946 kb on + strand at 390.947 kb on - strand at 390.986 kb on + strand at 390.987 kb on - strand at 390.992 kb on + strand at 390.993 kb on - strand at 390.993 kb on - strand at 391.036 kb on + strand at 391.037 kb on - strand at 391.089 kb on + strand at 391.095 kb on + strand at 391.095 kb on + strand at 391.095 kb on + strand at 391.096 kb on - strand at 391.115 kb on - strand at 391.131 kb on - strand at 391.176 kb on + strand, within IAI47_20715 at 391.176 kb on + strand, within IAI47_20715 at 391.177 kb on - strand, within IAI47_20715 at 391.197 kb on - strand, within IAI47_20715 at 391.197 kb on - strand, within IAI47_20715 at 391.199 kb on + strand, within IAI47_20715 at 391.199 kb on + strand, within IAI47_20715 at 391.199 kb on + strand at 391.199 kb on + strand, within IAI47_20715 at 391.199 kb on + strand, within IAI47_20715 at 391.199 kb on + strand, within IAI47_20715 at 391.200 kb on - strand, within IAI47_20715 at 391.200 kb on - strand, within IAI47_20715 at 391.200 kb on - strand, within IAI47_20715 at 391.200 kb on - strand, within IAI47_20715 at 391.200 kb on - strand, within IAI47_20715 at 391.200 kb on - strand, within IAI47_20715 at 391.200 kb on - strand, within IAI47_20715 at 391.200 kb on - strand, within IAI47_20715 at 391.200 kb on - strand, within IAI47_20715 at 391.200 kb on - strand, within IAI47_20715 at 391.200 kb on - strand, within IAI47_20715 at 391.200 kb on - strand, within IAI47_20715 at 391.200 kb on - strand, within IAI47_20715 at 391.283 kb on - strand, within IAI47_20715 at 391.283 kb on - strand, within IAI47_20715 at 391.283 kb on - strand, within IAI47_20715 at 391.283 kb on - strand, within IAI47_20715 at 391.283 kb on - strand, within IAI47_20715 at 391.301 kb on - strand, within IAI47_20715 at 391.301 kb on - strand, within IAI47_20715 at 391.322 kb on + strand, within IAI47_20715 at 391.323 kb on - strand, within IAI47_20715 at 391.323 kb on - strand, within IAI47_20715 at 391.323 kb on - strand, within IAI47_20715 at 391.323 kb on - strand, within IAI47_20715 at 391.338 kb on - strand, within IAI47_20715 at 391.347 kb on + strand, within IAI47_20715 at 391.348 kb on - strand, within IAI47_20715 at 391.378 kb on - strand, within IAI47_20715 at 391.378 kb on - strand, within IAI47_20715 at 391.378 kb on - strand, within IAI47_20715 at 391.378 kb on - strand, within IAI47_20715 at 391.378 kb on - strand, within IAI47_20715 at 391.378 kb on - strand, within IAI47_20715 at 391.418 kb on - strand at 391.418 kb on - strand at 391.459 kb on - strand at 391.480 kb on - strand at 391.485 kb on + strand at 391.486 kb on + strand at 391.487 kb on - strand at 391.487 kb on - strand at 391.487 kb on - strand at 391.487 kb on - strand at 391.487 kb on - strand at 391.487 kb on - strand at 391.487 kb on - strand at 391.488 kb on + strand at 391.489 kb on - strand at 391.489 kb on - strand at 391.489 kb on - strand at 391.509 kb on + strand at 391.552 kb on + strand at 391.552 kb on + strand at 391.553 kb on - strand at 391.583 kb on - strand, within IAI47_20720 at 391.628 kb on + strand, within IAI47_20720 at 391.629 kb on - strand, within IAI47_20720 at 391.629 kb on - strand, within IAI47_20720 at 391.629 kb on - strand, within IAI47_20720 at 391.629 kb on - strand, within IAI47_20720 at 391.653 kb on + strand, within IAI47_20720 at 391.653 kb on + strand, within IAI47_20720 at 391.665 kb on + strand, within IAI47_20720 at 391.665 kb on + strand, within IAI47_20720 at 391.665 kb on + strand, within IAI47_20720 at 391.666 kb on - strand, within IAI47_20720 at 391.666 kb on - strand, within IAI47_20720 at 391.666 kb on - strand, within IAI47_20720 at 391.666 kb on - strand, within IAI47_20720 at 391.729 kb on + strand, within IAI47_20720 at 391.729 kb on + strand, within IAI47_20720 at 391.729 kb on + strand, within IAI47_20720 at 391.730 kb on - strand, within IAI47_20720 at 391.730 kb on - strand, within IAI47_20720 at 391.730 kb on - strand, within IAI47_20720 at 391.732 kb on + strand, within IAI47_20720 at 391.733 kb on - strand, within IAI47_20720 at 391.761 kb on + strand, within IAI47_20720 at 391.762 kb on - strand, within IAI47_20720 at 391.803 kb on + strand, within IAI47_20720 at 391.803 kb on + strand, within IAI47_20720 at 391.804 kb on - strand, within IAI47_20720 at 391.804 kb on - strand, within IAI47_20720 at 391.839 kb on + strand, within IAI47_20720 at 391.858 kb on + strand, within IAI47_20720 at 391.859 kb on - strand, within IAI47_20720 at 391.859 kb on - strand, within IAI47_20720 at 391.971 kb on + strand, within IAI47_20720 at 391.971 kb on + strand, within IAI47_20720 at 391.972 kb on - strand, within IAI47_20720 at 391.972 kb on - strand, within IAI47_20720 at 391.972 kb on - strand, within IAI47_20720 at 391.972 kb on - strand, within IAI47_20720 at 391.990 kb on + strand, within IAI47_20720 at 391.990 kb on + strand, within IAI47_20720 at 391.990 kb on + strand, within IAI47_20720 at 391.990 kb on + strand, within IAI47_20720 at 391.990 kb on + strand, within IAI47_20720 at 391.990 kb on + strand, within IAI47_20720 at 391.991 kb on - strand, within IAI47_20720 at 391.991 kb on - strand, within IAI47_20720 at 391.991 kb on - strand, within IAI47_20720 at 391.993 kb on + strand, within IAI47_20720 at 391.993 kb on + strand, within IAI47_20720 at 391.994 kb on - strand, within IAI47_20720 at 391.994 kb on - strand, within IAI47_20720 at 391.994 kb on - strand, within IAI47_20720 at 391.994 kb on - strand, within IAI47_20720 at 391.994 kb on - strand, within IAI47_20720 at 392.005 kb on + strand, within IAI47_20720 at 392.005 kb on + strand, within IAI47_20720 at 392.006 kb on - strand, within IAI47_20720 at 392.015 kb on - strand, within IAI47_20720 at 392.022 kb on + strand, within IAI47_20720 at 392.022 kb on + strand, within IAI47_20720 at 392.092 kb on - strand, within IAI47_20720 at 392.092 kb on - strand, within IAI47_20720 at 392.110 kb on + strand, within IAI47_20720 at 392.111 kb on - strand, within IAI47_20720 at 392.111 kb on - strand, within IAI47_20720 at 392.182 kb on + strand, within IAI47_20720 at 392.182 kb on + strand, within IAI47_20720 at 392.182 kb on + strand, within IAI47_20720 at 392.186 kb on + strand, within IAI47_20720 at 392.186 kb on + strand, within IAI47_20720 at 392.236 kb on + strand, within IAI47_20720 at 392.236 kb on + strand, within IAI47_20720 at 392.236 kb on + strand, within IAI47_20720 at 392.237 kb on - strand, within IAI47_20720 at 392.313 kb on - strand, within IAI47_20720 at 392.313 kb on - strand, within IAI47_20720 at 392.356 kb on + strand, within IAI47_20720 at 392.357 kb on - strand, within IAI47_20720 at 392.379 kb on + strand, within IAI47_20720 at 392.379 kb on + strand, within IAI47_20720 at 392.379 kb on + strand, within IAI47_20720 at 392.379 kb on + strand, within IAI47_20720 at 392.380 kb on - strand, within IAI47_20720 at 392.380 kb on - strand, within IAI47_20720 at 392.380 kb on - strand, within IAI47_20720
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 remove 390,201 - IAI47_20710 0.43 -0.4 390,280 + IAI47_20710 0.52 +0.3 390,281 + IAI47_20710 0.52 -0.2 390,281 + IAI47_20710 0.52 +0.2 390,282 - IAI47_20710 0.52 +2.1 390,282 - IAI47_20710 0.52 -0.3 390,302 + IAI47_20710 0.54 -2.0 390,302 + IAI47_20710 0.54 -1.1 390,303 - IAI47_20710 0.54 -1.4 390,303 - IAI47_20710 0.54 +0.6 390,303 - IAI47_20710 0.54 +0.4 390,303 - IAI47_20710 0.54 +0.1 390,303 - IAI47_20710 0.54 -0.4 390,363 + IAI47_20710 0.60 -1.1 390,363 + IAI47_20710 0.60 -0.0 390,364 - IAI47_20710 0.61 -2.0 390,467 - IAI47_20710 0.71 +2.4 390,494 - IAI47_20710 0.74 -0.4 390,776 + +1.8 390,777 - +1.3 390,777 - +1.2 390,777 - +0.4 390,777 - -0.3 390,777 - -0.4 390,795 + +0.4 390,795 + -1.9 390,797 + +1.2 390,797 + -1.3 390,797 + -1.8 390,797 + +0.8 390,797 + -1.9 390,797 + +0.7 390,797 + -0.4 390,798 - -0.5 390,798 - -1.8 390,798 - +0.1 390,798 - -2.3 390,798 - +1.6 390,798 - -1.0 390,798 - +0.3 390,865 + +1.1 390,865 + -1.0 390,865 + -1.6 390,865 + -1.5 390,866 - +1.6 390,866 - +0.5 390,889 + -3.2 390,890 - -0.1 390,890 - +2.6 390,890 - -1.9 390,897 + +0.5 390,897 + +1.3 390,897 + -0.7 390,898 - +1.9 390,916 + -1.3 390,916 + +0.8 390,916 + +1.0 390,916 + -0.4 390,916 + +1.1 390,917 - +0.9 390,917 - +1.1 390,917 - +0.6 390,917 - +0.7 390,927 - -0.0 390,943 + +1.6 390,946 + +0.8 390,947 - +2.0 390,986 + -1.7 390,987 - -0.0 390,992 + -1.8 390,993 - +1.7 390,993 - +1.3 391,036 + -0.8 391,037 - -1.5 391,089 + -0.9 391,095 + -0.4 391,095 + +1.0 391,095 + -0.8 391,096 - +0.0 391,115 - +0.3 391,131 - +0.6 391,176 + IAI47_20715 0.15 +1.0 391,176 + IAI47_20715 0.15 -2.6 391,177 - IAI47_20715 0.15 +1.4 391,197 - IAI47_20715 0.22 -0.9 391,197 - IAI47_20715 0.22 +0.5 391,199 + IAI47_20715 0.22 -1.0 391,199 + IAI47_20715 0.22 -1.6 391,199 + +1.6 391,199 + IAI47_20715 0.22 -1.1 391,199 + IAI47_20715 0.22 -0.4 391,199 + IAI47_20715 0.22 +1.1 391,200 - IAI47_20715 0.23 +1.6 391,200 - IAI47_20715 0.23 +0.1 391,200 - IAI47_20715 0.23 -0.4 391,200 - IAI47_20715 0.23 -1.0 391,200 - IAI47_20715 0.23 +0.2 391,200 - IAI47_20715 0.23 +1.0 391,200 - IAI47_20715 0.23 -0.6 391,200 - IAI47_20715 0.23 +1.2 391,200 - IAI47_20715 0.23 +2.7 391,200 - IAI47_20715 0.23 +0.1 391,200 - IAI47_20715 0.23 +0.2 391,200 - IAI47_20715 0.23 -0.3 391,200 - IAI47_20715 0.23 -2.3 391,283 - IAI47_20715 0.49 +0.1 391,283 - IAI47_20715 0.49 +0.4 391,283 - IAI47_20715 0.49 +4.1 391,283 - IAI47_20715 0.49 -0.7 391,283 - IAI47_20715 0.49 +0.6 391,301 - IAI47_20715 0.55 +2.6 391,301 - IAI47_20715 0.55 +2.4 391,322 + IAI47_20715 0.61 -2.8 391,323 - IAI47_20715 0.62 +1.6 391,323 - IAI47_20715 0.62 +3.1 391,323 - IAI47_20715 0.62 -0.4 391,323 - IAI47_20715 0.62 -0.6 391,338 - IAI47_20715 0.66 -0.9 391,347 + IAI47_20715 0.69 -1.3 391,348 - IAI47_20715 0.70 +2.1 391,378 - IAI47_20715 0.79 +2.4 391,378 - IAI47_20715 0.79 +1.6 391,378 - IAI47_20715 0.79 +0.8 391,378 - IAI47_20715 0.79 -0.4 391,378 - IAI47_20715 0.79 +0.7 391,378 - IAI47_20715 0.79 +1.0 391,418 - -0.4 391,418 - +0.2 391,459 - -0.0 391,480 - +3.1 391,485 + -2.1 391,486 + -0.4 391,487 - -2.5 391,487 - +0.6 391,487 - -1.0 391,487 - +1.0 391,487 - +1.6 391,487 - -0.4 391,487 - +0.3 391,488 + -0.1 391,489 - +1.0 391,489 - +1.7 391,489 - +0.2 391,509 + -3.1 391,552 + +1.0 391,552 + -0.3 391,553 - +0.8 391,583 - IAI47_20720 0.11 -1.4 391,628 + IAI47_20720 0.15 -1.0 391,629 - IAI47_20720 0.15 -2.3 391,629 - IAI47_20720 0.15 -0.1 391,629 - IAI47_20720 0.15 -2.0 391,629 - IAI47_20720 0.15 +0.2 391,653 + IAI47_20720 0.17 -0.5 391,653 + IAI47_20720 0.17 +3.3 391,665 + IAI47_20720 0.18 -1.4 391,665 + IAI47_20720 0.18 +3.9 391,665 + IAI47_20720 0.18 +1.2 391,666 - IAI47_20720 0.18 +2.0 391,666 - IAI47_20720 0.18 -0.0 391,666 - IAI47_20720 0.18 +1.0 391,666 - IAI47_20720 0.18 -1.6 391,729 + IAI47_20720 0.24 +1.1 391,729 + IAI47_20720 0.24 -0.4 391,729 + IAI47_20720 0.24 +1.3 391,730 - IAI47_20720 0.24 -0.1 391,730 - IAI47_20720 0.24 +1.8 391,730 - IAI47_20720 0.24 +3.1 391,732 + IAI47_20720 0.24 -0.1 391,733 - IAI47_20720 0.24 -0.0 391,761 + IAI47_20720 0.27 -1.0 391,762 - IAI47_20720 0.27 +3.4 391,803 + IAI47_20720 0.31 +1.0 391,803 + IAI47_20720 0.31 +0.5 391,804 - IAI47_20720 0.31 -1.9 391,804 - IAI47_20720 0.31 +0.9 391,839 + IAI47_20720 0.34 -1.4 391,858 + IAI47_20720 0.36 -2.5 391,859 - IAI47_20720 0.36 -2.4 391,859 - IAI47_20720 0.36 +2.1 391,971 + IAI47_20720 0.46 -0.4 391,971 + IAI47_20720 0.46 +0.0 391,972 - IAI47_20720 0.46 -1.0 391,972 - IAI47_20720 0.46 +0.6 391,972 - IAI47_20720 0.46 +0.4 391,972 - IAI47_20720 0.46 +2.0 391,990 + IAI47_20720 0.47 -2.6 391,990 + IAI47_20720 0.47 +4.1 391,990 + IAI47_20720 0.47 -2.1 391,990 + IAI47_20720 0.47 +1.6 391,990 + IAI47_20720 0.47 -0.4 391,990 + IAI47_20720 0.47 +3.3 391,991 - IAI47_20720 0.47 -1.3 391,991 - IAI47_20720 0.47 -0.8 391,991 - IAI47_20720 0.47 +1.6 391,993 + IAI47_20720 0.48 +1.8 391,993 + IAI47_20720 0.48 -0.6 391,994 - IAI47_20720 0.48 +0.6 391,994 - IAI47_20720 0.48 -0.8 391,994 - IAI47_20720 0.48 -2.0 391,994 - IAI47_20720 0.48 -0.6 391,994 - IAI47_20720 0.48 +3.1 392,005 + IAI47_20720 0.49 +2.4 392,005 + IAI47_20720 0.49 -1.3 392,006 - IAI47_20720 0.49 -0.8 392,015 - IAI47_20720 0.50 +2.0 392,022 + IAI47_20720 0.50 +2.3 392,022 + IAI47_20720 0.50 -0.9 392,092 - IAI47_20720 0.56 -2.4 392,092 - IAI47_20720 0.56 -1.0 392,110 + IAI47_20720 0.58 +0.9 392,111 - IAI47_20720 0.58 -1.4 392,111 - IAI47_20720 0.58 -1.9 392,182 + IAI47_20720 0.65 +0.6 392,182 + IAI47_20720 0.65 -0.6 392,182 + IAI47_20720 0.65 +0.6 392,186 + IAI47_20720 0.65 -0.0 392,186 + IAI47_20720 0.65 -1.6 392,236 + IAI47_20720 0.69 +1.2 392,236 + IAI47_20720 0.69 -0.3 392,236 + IAI47_20720 0.69 +0.8 392,237 - IAI47_20720 0.69 -1.4 392,313 - IAI47_20720 0.76 -1.5 392,313 - IAI47_20720 0.76 +0.8 392,356 + IAI47_20720 0.80 +0.4 392,357 - IAI47_20720 0.80 +1.6 392,379 + IAI47_20720 0.82 -2.2 392,379 + IAI47_20720 0.82 +1.5 392,379 + IAI47_20720 0.82 -1.4 392,379 + IAI47_20720 0.82 -0.1 392,380 - IAI47_20720 0.82 -0.4 392,380 - IAI47_20720 0.82 -2.3 392,380 - IAI47_20720 0.82 -1.1
Or see this region's nucleotide sequence