Experiment: Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_19870 and IAI47_19875 are separated by 315 nucleotides IAI47_19875 and IAI47_19880 are separated by 561 nucleotides
IAI47_19870: IAI47_19870 - iron export ABC transporter permease subunit FetB, at 199,937 to 200,716
_19870
IAI47_19875: IAI47_19875 - TetR/AcrR family transcriptional regulator, at 201,032 to 201,670
_19875
IAI47_19880: IAI47_19880 - LysR family transcriptional regulator, at 202,232 to 203,191
_19880
Position (kb) 201
202 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 200.041 kb on + strand, within IAI47_19870 at 200.041 kb on + strand, within IAI47_19870 at 200.041 kb on + strand, within IAI47_19870 at 200.041 kb on + strand, within IAI47_19870 at 200.041 kb on + strand, within IAI47_19870 at 200.042 kb on - strand, within IAI47_19870 at 200.042 kb on - strand, within IAI47_19870 at 200.055 kb on + strand, within IAI47_19870 at 200.055 kb on + strand, within IAI47_19870 at 200.055 kb on + strand, within IAI47_19870 at 200.055 kb on + strand, within IAI47_19870 at 200.055 kb on + strand, within IAI47_19870 at 200.056 kb on - strand, within IAI47_19870 at 200.056 kb on - strand, within IAI47_19870 at 200.080 kb on + strand, within IAI47_19870 at 200.080 kb on + strand, within IAI47_19870 at 200.081 kb on - strand, within IAI47_19870 at 200.081 kb on - strand, within IAI47_19870 at 200.081 kb on - strand, within IAI47_19870 at 200.081 kb on - strand, within IAI47_19870 at 200.116 kb on + strand, within IAI47_19870 at 200.119 kb on + strand, within IAI47_19870 at 200.119 kb on + strand, within IAI47_19870 at 200.120 kb on - strand, within IAI47_19870 at 200.120 kb on - strand, within IAI47_19870 at 200.120 kb on - strand, within IAI47_19870 at 200.137 kb on - strand, within IAI47_19870 at 200.152 kb on + strand, within IAI47_19870 at 200.152 kb on + strand, within IAI47_19870 at 200.152 kb on + strand, within IAI47_19870 at 200.153 kb on - strand, within IAI47_19870 at 200.160 kb on + strand, within IAI47_19870 at 200.160 kb on + strand, within IAI47_19870 at 200.160 kb on + strand, within IAI47_19870 at 200.160 kb on + strand, within IAI47_19870 at 200.231 kb on - strand, within IAI47_19870 at 200.231 kb on - strand, within IAI47_19870 at 200.360 kb on + strand, within IAI47_19870 at 200.361 kb on - strand, within IAI47_19870 at 200.405 kb on - strand, within IAI47_19870 at 200.453 kb on - strand, within IAI47_19870 at 200.455 kb on + strand, within IAI47_19870 at 200.456 kb on - strand, within IAI47_19870 at 200.456 kb on - strand, within IAI47_19870 at 200.473 kb on + strand, within IAI47_19870 at 200.473 kb on + strand, within IAI47_19870 at 200.473 kb on + strand, within IAI47_19870 at 200.474 kb on - strand, within IAI47_19870 at 200.493 kb on + strand, within IAI47_19870 at 200.493 kb on + strand, within IAI47_19870 at 200.493 kb on + strand, within IAI47_19870 at 200.494 kb on - strand, within IAI47_19870 at 200.494 kb on - strand, within IAI47_19870 at 200.494 kb on - strand, within IAI47_19870 at 200.494 kb on - strand, within IAI47_19870 at 200.581 kb on + strand, within IAI47_19870 at 200.581 kb on + strand, within IAI47_19870 at 200.581 kb on + strand, within IAI47_19870 at 200.581 kb on + strand, within IAI47_19870 at 200.581 kb on + strand, within IAI47_19870 at 200.581 kb on + strand, within IAI47_19870 at 200.581 kb on + strand, within IAI47_19870 at 200.582 kb on - strand, within IAI47_19870 at 200.582 kb on - strand, within IAI47_19870 at 200.582 kb on - strand, within IAI47_19870 at 200.582 kb on - strand, within IAI47_19870 at 200.582 kb on - strand, within IAI47_19870 at 200.582 kb on - strand, within IAI47_19870 at 200.582 kb on - strand, within IAI47_19870 at 200.585 kb on + strand, within IAI47_19870 at 200.585 kb on + strand, within IAI47_19870 at 200.586 kb on - strand, within IAI47_19870 at 200.593 kb on + strand, within IAI47_19870 at 200.594 kb on - strand, within IAI47_19870 at 200.594 kb on - strand, within IAI47_19870 at 200.648 kb on + strand at 200.648 kb on + strand at 200.648 kb on + strand at 200.648 kb on + strand at 200.649 kb on - strand at 200.649 kb on - strand at 200.649 kb on - strand at 200.649 kb on - strand at 200.649 kb on - strand at 200.649 kb on - strand at 200.652 kb on + strand at 200.653 kb on - strand at 200.653 kb on - strand at 200.653 kb on - strand at 200.658 kb on - strand at 200.669 kb on + strand at 200.671 kb on + strand at 200.694 kb on + strand at 200.714 kb on + strand at 200.714 kb on + strand at 200.743 kb on - strand at 200.743 kb on - strand at 200.743 kb on - strand at 200.756 kb on + strand at 200.756 kb on + strand at 200.756 kb on + strand at 200.756 kb on + strand at 200.756 kb on + strand at 200.757 kb on - strand at 200.757 kb on - strand at 200.758 kb on + strand at 200.758 kb on + strand at 200.758 kb on + strand at 200.758 kb on + strand at 200.758 kb on + strand at 200.758 kb on + strand at 200.759 kb on - strand at 200.759 kb on - strand at 200.759 kb on - strand at 200.778 kb on - strand at 200.839 kb on - strand at 200.839 kb on - strand at 200.857 kb on + strand at 200.857 kb on + strand at 200.858 kb on - strand at 200.858 kb on - strand at 200.864 kb on + strand at 200.864 kb on + strand at 200.865 kb on - strand at 200.865 kb on - strand at 200.865 kb on - strand at 200.865 kb on - strand at 200.865 kb on - strand at 200.865 kb on - strand at 200.868 kb on + strand at 200.868 kb on + strand at 200.868 kb on + strand at 200.868 kb on + strand at 200.868 kb on + strand at 200.868 kb on + strand at 200.869 kb on - strand at 200.869 kb on - strand at 200.869 kb on - strand at 200.869 kb on - strand at 200.903 kb on + strand at 200.918 kb on + strand at 200.918 kb on + strand at 200.919 kb on - strand at 200.919 kb on - strand at 200.919 kb on - strand at 200.921 kb on + strand at 200.921 kb on + strand at 200.922 kb on - strand at 200.922 kb on - strand at 200.948 kb on + strand at 201.085 kb on + strand at 201.085 kb on + strand at 201.086 kb on - strand at 201.086 kb on - strand at 201.172 kb on + strand, within IAI47_19875 at 201.176 kb on + strand, within IAI47_19875 at 201.176 kb on + strand, within IAI47_19875 at 201.177 kb on - strand, within IAI47_19875 at 201.177 kb on - strand, within IAI47_19875 at 201.178 kb on + strand, within IAI47_19875 at 201.179 kb on - strand, within IAI47_19875 at 201.202 kb on + strand, within IAI47_19875 at 201.202 kb on + strand, within IAI47_19875 at 201.202 kb on + strand, within IAI47_19875 at 201.204 kb on + strand, within IAI47_19875 at 201.204 kb on + strand, within IAI47_19875 at 201.204 kb on + strand, within IAI47_19875 at 201.206 kb on + strand, within IAI47_19875 at 201.206 kb on + strand, within IAI47_19875 at 201.206 kb on + strand, within IAI47_19875 at 201.206 kb on + strand, within IAI47_19875 at 201.206 kb on + strand, within IAI47_19875 at 201.206 kb on + strand, within IAI47_19875 at 201.206 kb on + strand, within IAI47_19875 at 201.207 kb on - strand, within IAI47_19875 at 201.207 kb on - strand, within IAI47_19875 at 201.207 kb on - strand, within IAI47_19875 at 201.219 kb on + strand, within IAI47_19875 at 201.227 kb on + strand, within IAI47_19875 at 201.227 kb on + strand, within IAI47_19875 at 201.228 kb on - strand, within IAI47_19875 at 201.321 kb on + strand, within IAI47_19875 at 201.321 kb on + strand, within IAI47_19875 at 201.321 kb on + strand, within IAI47_19875 at 201.321 kb on + strand, within IAI47_19875 at 201.355 kb on + strand, within IAI47_19875 at 201.358 kb on + strand, within IAI47_19875 at 201.358 kb on + strand, within IAI47_19875 at 201.358 kb on + strand, within IAI47_19875 at 201.381 kb on + strand, within IAI47_19875 at 201.428 kb on - strand, within IAI47_19875 at 201.430 kb on + strand, within IAI47_19875 at 201.459 kb on + strand, within IAI47_19875 at 201.526 kb on + strand, within IAI47_19875 at 201.526 kb on + strand, within IAI47_19875 at 201.527 kb on - strand, within IAI47_19875 at 201.601 kb on + strand, within IAI47_19875 at 201.629 kb on + strand at 201.631 kb on + strand at 201.634 kb on + strand at 201.635 kb on - strand at 201.635 kb on - strand at 201.746 kb on + strand at 201.746 kb on + strand at 201.765 kb on + strand at 201.765 kb on + strand at 201.793 kb on - strand at 201.798 kb on - strand at 201.812 kb on + strand at 201.812 kb on + strand at 201.812 kb on + strand at 201.812 kb on + strand at 201.812 kb on + strand at 201.812 kb on + strand at 201.812 kb on + strand at 201.812 kb on + strand at 201.813 kb on - strand at 201.813 kb on - strand at 201.813 kb on - strand at 201.813 kb on - strand at 201.813 kb on - strand at 201.813 kb on - strand at 201.813 kb on - strand at 201.823 kb on + strand at 201.823 kb on + strand at 201.823 kb on + strand at 201.865 kb on + strand at 201.865 kb on + strand at 201.866 kb on - strand at 201.866 kb on - strand at 201.866 kb on - strand at 201.868 kb on + strand at 201.868 kb on + strand at 201.886 kb on - strand at 201.890 kb on + strand at 201.948 kb on + strand at 201.948 kb on + strand at 202.002 kb on + strand at 202.015 kb on + strand at 202.016 kb on - strand at 202.016 kb on - strand at 202.016 kb on - strand at 202.016 kb on - strand at 202.017 kb on + strand at 202.017 kb on + strand at 202.017 kb on + strand at 202.017 kb on + strand at 202.018 kb on - strand at 202.018 kb on - strand at 202.018 kb on - strand at 202.018 kb on - strand at 202.128 kb on + strand at 202.242 kb on + strand at 202.242 kb on + strand at 202.393 kb on + strand, within IAI47_19880 at 202.394 kb on - strand, within IAI47_19880 at 202.394 kb on - strand, within IAI47_19880 at 202.448 kb on + strand, within IAI47_19880 at 202.448 kb on + strand, within IAI47_19880 at 202.448 kb on + strand, within IAI47_19880 at 202.448 kb on + strand, within IAI47_19880 at 202.448 kb on + strand, within IAI47_19880 at 202.449 kb on - strand, within IAI47_19880 at 202.449 kb on - strand, within IAI47_19880 at 202.449 kb on - strand, within IAI47_19880 at 202.449 kb on - strand, within IAI47_19880 at 202.449 kb on - strand, within IAI47_19880 at 202.449 kb on - strand, within IAI47_19880 at 202.449 kb on - strand, within IAI47_19880 at 202.474 kb on - strand, within IAI47_19880 at 202.474 kb on - strand, within IAI47_19880 at 202.482 kb on + strand, within IAI47_19880 at 202.482 kb on + strand, within IAI47_19880 at 202.482 kb on + strand, within IAI47_19880 at 202.483 kb on - strand, within IAI47_19880 at 202.483 kb on - strand, within IAI47_19880 at 202.532 kb on - strand, within IAI47_19880 at 202.564 kb on - strand, within IAI47_19880 at 202.564 kb on - strand, within IAI47_19880
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 remove 200,041 + IAI47_19870 0.13 -0.8 200,041 + IAI47_19870 0.13 +1.3 200,041 + IAI47_19870 0.13 +0.6 200,041 + IAI47_19870 0.13 +0.7 200,041 + IAI47_19870 0.13 -0.1 200,042 - IAI47_19870 0.13 -0.2 200,042 - IAI47_19870 0.13 -0.8 200,055 + IAI47_19870 0.15 +0.6 200,055 + IAI47_19870 0.15 -1.9 200,055 + IAI47_19870 0.15 +1.3 200,055 + IAI47_19870 0.15 -1.9 200,055 + IAI47_19870 0.15 -1.7 200,056 - IAI47_19870 0.15 -0.6 200,056 - IAI47_19870 0.15 -0.8 200,080 + IAI47_19870 0.18 -0.5 200,080 + IAI47_19870 0.18 +2.1 200,081 - IAI47_19870 0.18 -0.3 200,081 - IAI47_19870 0.18 -1.0 200,081 - IAI47_19870 0.18 +1.8 200,081 - IAI47_19870 0.18 -0.2 200,116 + IAI47_19870 0.23 -0.8 200,119 + IAI47_19870 0.23 -1.9 200,119 + IAI47_19870 0.23 +0.5 200,120 - IAI47_19870 0.23 -0.5 200,120 - IAI47_19870 0.23 +0.2 200,120 - IAI47_19870 0.23 -0.8 200,137 - IAI47_19870 0.26 -0.0 200,152 + IAI47_19870 0.28 -1.0 200,152 + IAI47_19870 0.28 -0.0 200,152 + IAI47_19870 0.28 +0.5 200,153 - IAI47_19870 0.28 +1.6 200,160 + IAI47_19870 0.29 -1.0 200,160 + IAI47_19870 0.29 +0.5 200,160 + IAI47_19870 0.29 -1.6 200,160 + IAI47_19870 0.29 -1.2 200,231 - IAI47_19870 0.38 -1.0 200,231 - IAI47_19870 0.38 +0.7 200,360 + IAI47_19870 0.54 -0.0 200,361 - IAI47_19870 0.54 -1.0 200,405 - IAI47_19870 0.60 +0.7 200,453 - IAI47_19870 0.66 -1.2 200,455 + IAI47_19870 0.66 -0.2 200,456 - IAI47_19870 0.67 +1.6 200,456 - IAI47_19870 0.67 +1.6 200,473 + IAI47_19870 0.69 +1.6 200,473 + IAI47_19870 0.69 -1.6 200,473 + IAI47_19870 0.69 +0.2 200,474 - IAI47_19870 0.69 -0.0 200,493 + IAI47_19870 0.71 +0.5 200,493 + IAI47_19870 0.71 -0.5 200,493 + IAI47_19870 0.71 -1.3 200,494 - IAI47_19870 0.71 -0.9 200,494 - IAI47_19870 0.71 +2.0 200,494 - IAI47_19870 0.71 +1.8 200,494 - IAI47_19870 0.71 +1.2 200,581 + IAI47_19870 0.83 +0.8 200,581 + IAI47_19870 0.83 -2.4 200,581 + IAI47_19870 0.83 -3.1 200,581 + IAI47_19870 0.83 +1.0 200,581 + IAI47_19870 0.83 -1.3 200,581 + IAI47_19870 0.83 -0.0 200,581 + IAI47_19870 0.83 -1.8 200,582 - IAI47_19870 0.83 -1.6 200,582 - IAI47_19870 0.83 -1.4 200,582 - IAI47_19870 0.83 +1.5 200,582 - IAI47_19870 0.83 +0.6 200,582 - IAI47_19870 0.83 -0.8 200,582 - IAI47_19870 0.83 +0.7 200,582 - IAI47_19870 0.83 -1.0 200,585 + IAI47_19870 0.83 -1.8 200,585 + IAI47_19870 0.83 -1.3 200,586 - IAI47_19870 0.83 +1.6 200,593 + IAI47_19870 0.84 +1.0 200,594 - IAI47_19870 0.84 -0.2 200,594 - IAI47_19870 0.84 -1.1 200,648 + -2.5 200,648 + +0.5 200,648 + +1.6 200,648 + +2.3 200,649 - -0.0 200,649 - -0.4 200,649 - -1.6 200,649 - +0.8 200,649 - -0.9 200,649 - +0.1 200,652 + +2.7 200,653 - +0.4 200,653 - -2.0 200,653 - +0.9 200,658 - -0.0 200,669 + +0.7 200,671 + -0.0 200,694 + -1.6 200,714 + +0.6 200,714 + -0.4 200,743 - +1.3 200,743 - +1.8 200,743 - -1.4 200,756 + -1.0 200,756 + +0.1 200,756 + +0.5 200,756 + -0.3 200,756 + +1.6 200,757 - -0.4 200,757 - -1.2 200,758 + -2.2 200,758 + -0.3 200,758 + +0.2 200,758 + +0.4 200,758 + +0.8 200,758 + -0.8 200,759 - -2.2 200,759 - -3.2 200,759 - -0.4 200,778 - +0.2 200,839 - -0.4 200,839 - +0.1 200,857 + +1.0 200,857 + -2.2 200,858 - +1.0 200,858 - +0.1 200,864 + +1.6 200,864 + +0.1 200,865 - -0.2 200,865 - +0.8 200,865 - -1.4 200,865 - -1.0 200,865 - -1.0 200,865 - -2.0 200,868 + +2.2 200,868 + -0.9 200,868 + +2.9 200,868 + +1.4 200,868 + +0.1 200,868 + +1.2 200,869 - +0.3 200,869 - +1.0 200,869 - -0.6 200,869 - -0.7 200,903 + +1.7 200,918 + +1.6 200,918 + +2.6 200,919 - -0.0 200,919 - +0.6 200,919 - +2.0 200,921 + +0.5 200,921 + +0.7 200,922 - +0.2 200,922 - -2.1 200,948 + -1.4 201,085 + +1.3 201,085 + -1.1 201,086 - -3.1 201,086 - -1.0 201,172 + IAI47_19875 0.22 +1.5 201,176 + IAI47_19875 0.23 +1.6 201,176 + IAI47_19875 0.23 +0.1 201,177 - IAI47_19875 0.23 -1.0 201,177 - IAI47_19875 0.23 -1.0 201,178 + IAI47_19875 0.23 +0.9 201,179 - IAI47_19875 0.23 -0.0 201,202 + IAI47_19875 0.27 -0.9 201,202 + IAI47_19875 0.27 +2.0 201,202 + IAI47_19875 0.27 -2.4 201,204 + IAI47_19875 0.27 +1.0 201,204 + IAI47_19875 0.27 +1.3 201,204 + IAI47_19875 0.27 +0.4 201,206 + IAI47_19875 0.27 +2.0 201,206 + IAI47_19875 0.27 +0.6 201,206 + IAI47_19875 0.27 +1.0 201,206 + IAI47_19875 0.27 -1.4 201,206 + IAI47_19875 0.27 +1.4 201,206 + IAI47_19875 0.27 +0.4 201,206 + IAI47_19875 0.27 +2.5 201,207 - IAI47_19875 0.27 -2.0 201,207 - IAI47_19875 0.27 -2.1 201,207 - IAI47_19875 0.27 -0.8 201,219 + IAI47_19875 0.29 -1.2 201,227 + IAI47_19875 0.31 +1.0 201,227 + IAI47_19875 0.31 -0.8 201,228 - IAI47_19875 0.31 -1.4 201,321 + IAI47_19875 0.45 +0.7 201,321 + IAI47_19875 0.45 +1.6 201,321 + IAI47_19875 0.45 +1.0 201,321 + IAI47_19875 0.45 +0.4 201,355 + IAI47_19875 0.51 -0.4 201,358 + IAI47_19875 0.51 +0.2 201,358 + IAI47_19875 0.51 +1.3 201,358 + IAI47_19875 0.51 +1.1 201,381 + IAI47_19875 0.55 +1.1 201,428 - IAI47_19875 0.62 -1.3 201,430 + IAI47_19875 0.62 -0.4 201,459 + IAI47_19875 0.67 +2.6 201,526 + IAI47_19875 0.77 +1.2 201,526 + IAI47_19875 0.77 +1.0 201,527 - IAI47_19875 0.77 -2.6 201,601 + IAI47_19875 0.89 -0.8 201,629 + +0.8 201,631 + +0.8 201,634 + +0.3 201,635 - -2.0 201,635 - -0.8 201,746 + +1.1 201,746 + -1.2 201,765 + -1.2 201,765 + +1.3 201,793 - +0.1 201,798 - +0.8 201,812 + -0.0 201,812 + -0.7 201,812 + -1.2 201,812 + -2.7 201,812 + +1.3 201,812 + -2.1 201,812 + +2.1 201,812 + +1.3 201,813 - -2.6 201,813 - +0.1 201,813 - +1.8 201,813 - -0.9 201,813 - -0.7 201,813 - -2.3 201,813 - +0.1 201,823 + -1.2 201,823 + -0.8 201,823 + +1.8 201,865 + -0.0 201,865 + -0.4 201,866 - -1.0 201,866 - -1.0 201,866 - -1.4 201,868 + +2.0 201,868 + -1.6 201,886 - -0.4 201,890 + -0.4 201,948 + +1.3 201,948 + -0.6 202,002 + -0.0 202,015 + -2.6 202,016 - -1.2 202,016 - -1.0 202,016 - -2.2 202,016 - -0.6 202,017 + +0.6 202,017 + +3.2 202,017 + +0.1 202,017 + +0.1 202,018 - -1.8 202,018 - +0.1 202,018 - +0.8 202,018 - -2.0 202,128 + +1.6 202,242 + +0.2 202,242 + +0.1 202,393 + IAI47_19880 0.17 +0.1 202,394 - IAI47_19880 0.17 -0.9 202,394 - IAI47_19880 0.17 -2.3 202,448 + IAI47_19880 0.23 -1.9 202,448 + IAI47_19880 0.23 +0.1 202,448 + IAI47_19880 0.23 +1.6 202,448 + IAI47_19880 0.23 +0.6 202,448 + IAI47_19880 0.23 +1.7 202,449 - IAI47_19880 0.23 -2.6 202,449 - IAI47_19880 0.23 -1.9 202,449 - IAI47_19880 0.23 +2.0 202,449 - IAI47_19880 0.23 +2.0 202,449 - IAI47_19880 0.23 +0.2 202,449 - IAI47_19880 0.23 -0.9 202,449 - IAI47_19880 0.23 -1.0 202,474 - IAI47_19880 0.25 +1.9 202,474 - IAI47_19880 0.25 +0.6 202,482 + IAI47_19880 0.26 +1.6 202,482 + IAI47_19880 0.26 -0.6 202,482 + IAI47_19880 0.26 -2.6 202,483 - IAI47_19880 0.26 -0.4 202,483 - IAI47_19880 0.26 -0.0 202,532 - IAI47_19880 0.31 -1.0 202,564 - IAI47_19880 0.35 -0.6 202,564 - IAI47_19880 0.35 +0.7
Or see this region's nucleotide sequence