Strain Fitness in Pantoea sp. MT58 around IAI47_18735

Experiment: Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
3,995,624	+		IAI47_18730	0.43	-0.1
3,995,625	-		IAI47_18730	0.43	+0.7
3,995,822	-		IAI47_18730	0.58	-0.3
3,995,920	+		IAI47_18730	0.65	-0.4
3,995,920	+		IAI47_18730	0.65	+1.1
3,995,920	+		IAI47_18730	0.65	+1.3
3,995,920	+		IAI47_18730	0.65	-0.5
3,995,920	+		IAI47_18730	0.65	-0.2
3,995,921	-		IAI47_18730	0.65	+1.3
3,995,921	-		IAI47_18730	0.65	-0.1
3,995,921	-		IAI47_18730	0.65	-0.7
3,995,921	-		IAI47_18730	0.65	-1.1
3,995,921	-		IAI47_18730	0.65	-0.2
3,995,930	+		IAI47_18730	0.66	+0.6
3,995,930	+		IAI47_18730	0.66	-1.7
3,995,939	+		IAI47_18730	0.67	-0.8
3,995,940	-		IAI47_18730	0.67	+0.9
3,995,940	-		IAI47_18730	0.67	+0.0
3,996,013	+		IAI47_18730	0.72	+0.7
3,996,013	+		IAI47_18730	0.72	+0.2
3,996,013	+		IAI47_18730	0.72	-0.4
3,996,013	+		IAI47_18730	0.72	+0.8
3,996,013	+		IAI47_18730	0.72	+0.9
3,996,013	+		IAI47_18730	0.72	+1.8
3,996,013	+		IAI47_18730	0.72	-0.4
3,996,013	+		IAI47_18730	0.72	-0.1
3,996,013	+		IAI47_18730	0.72	+0.0
3,996,013	+		IAI47_18730	0.72	+0.2
3,996,013	+		IAI47_18730	0.72	-0.6
3,996,013	+		IAI47_18730	0.72	+0.2
3,996,013	+		IAI47_18730	0.72	-1.7
3,996,013	+		IAI47_18730	0.72	-1.1
3,996,013	+		IAI47_18730	0.72	-0.7
3,996,013	+		IAI47_18730	0.72	+0.6
3,996,013	+		IAI47_18730	0.72	+0.0
3,996,013	+		IAI47_18730	0.72	-3.3
3,996,014	-		IAI47_18730	0.72	-0.3
3,996,014	-		IAI47_18730	0.72	-0.2
3,996,014	-		IAI47_18730	0.72	-1.3
3,996,014	-		IAI47_18730	0.72	+1.1
3,996,014	-		IAI47_18730	0.72	+0.2
3,996,014	-		IAI47_18730	0.72	+0.9
3,996,014	-		IAI47_18730	0.72	+0.0
3,996,014	-		IAI47_18730	0.72	-0.6
3,996,014	-		IAI47_18730	0.72	-0.2
3,996,014	-		IAI47_18730	0.72	+2.0
3,996,064	+		IAI47_18730	0.76	+1.0
3,996,064	+		IAI47_18730	0.76	+0.3
3,996,065	-		IAI47_18730	0.76	+1.4
3,996,065	-		IAI47_18730	0.76	+1.4
3,996,178	+		IAI47_18730	0.84	-0.4
3,996,178	+		IAI47_18730	0.84	+0.5
3,996,179	-		IAI47_18730	0.84	-0.8
3,996,179	-		IAI47_18730	0.84	+2.7
3,996,190	+		IAI47_18730	0.85	-0.6
3,996,190	+		IAI47_18730	0.85	+0.0
3,996,190	+		IAI47_18730	0.85	+0.1
3,996,190	+		IAI47_18730	0.85	-1.9
3,996,191	-		IAI47_18730	0.85	+1.9
3,996,191	-		IAI47_18730	0.85	-0.4
3,996,191	-		IAI47_18730	0.85	+4.0
3,996,191	-		IAI47_18730	0.85	+0.4
3,996,191	-		IAI47_18730	0.85	-2.3
3,996,194	+		IAI47_18730	0.86	+0.0
3,996,194	+		IAI47_18730	0.86	+0.5
3,996,195	-		IAI47_18730	0.86	-1.2
3,996,195	-		IAI47_18730	0.86	+1.3
3,996,217	+		IAI47_18730	0.87	+1.4
3,996,217	+		IAI47_18730	0.87	+0.1
3,996,217	+		IAI47_18730	0.87	-2.2
3,996,217	+		IAI47_18730	0.87	+0.6
3,996,217	+		IAI47_18730	0.87	-1.0
3,996,217	+		IAI47_18730	0.87	+0.3
3,996,217	+		IAI47_18730	0.87	-1.9
3,996,217	+		IAI47_18730	0.87	-1.6
3,996,217	+		IAI47_18730	0.87	+0.0
3,996,218	-		IAI47_18730	0.87	+1.7
3,996,218	-		IAI47_18730	0.87	-0.3
3,996,218	-		IAI47_18730	0.87	-0.1
3,996,218	-		IAI47_18730	0.87	+0.3
3,996,218	-		IAI47_18730	0.87	-1.2
3,996,218	-		IAI47_18730	0.87	-0.1
3,996,218	-		IAI47_18730	0.87	+1.2
3,996,218	-		IAI47_18730	0.87	-0.2
3,996,218	-		IAI47_18730	0.87	+0.6
3,996,218	-		IAI47_18730	0.87	+1.6
3,996,257	-				-0.7
3,996,257	-				-0.4
3,996,257	-				+2.7
3,996,268	+				+0.4
3,996,359	+				+0.7
3,996,359	+				+0.1
3,996,360	-				+0.5
3,996,365	+				-2.4
3,996,365	+				-0.1
3,996,365	+				+0.1
3,996,386	+				+0.0
3,996,386	+				+0.7
3,996,387	-				-0.2
3,996,400	-				-0.3
3,996,431	+				+0.0
3,996,431	+				+0.6
3,996,431	+				-0.7
3,996,431	+				-2.0
3,996,431	+				-0.3
3,996,432	-				-1.9
3,996,432	-				+0.7
3,996,432	-				+1.5
3,996,432	-				+0.2
3,996,432	-				-2.5
3,996,512	-				+0.5
3,996,556	+				-0.7
3,996,557	-				+1.6
3,996,557	-				+1.6
3,996,579	+				-0.1
3,996,579	+				-1.3
3,996,579	+				-1.0
3,996,579	+				-0.4
3,996,581	+				-2.7
3,996,581	+				+0.6
3,996,582	-				+0.4
3,996,582	-				+0.5
3,996,593	+				-0.2
3,996,593	+				-1.3
3,996,631	+				-0.2
3,996,631	+				-2.2
3,996,632	-				+0.1
3,996,632	-				+1.1
3,996,643	+				+2.7
3,996,668	+				+0.4
3,996,668	+				+0.2
3,996,668	+				+0.3
3,996,669	-				-1.1
3,996,922	+		IAI47_18735	0.42	-3.2
3,996,922	+		IAI47_18735	0.42	-0.7
3,996,922	+		IAI47_18735	0.42	-0.4
3,996,923	-		IAI47_18735	0.42	-0.4
3,996,923	-		IAI47_18735	0.42	-0.7
3,996,923	-		IAI47_18735	0.42	-0.5
3,996,946	+		IAI47_18735	0.45	+0.3
3,996,947	-		IAI47_18735	0.45	-2.3
3,997,011	-		IAI47_18735	0.54	-1.0
3,997,020	-		IAI47_18735	0.55	-1.2
3,997,088	+		IAI47_18735	0.64	-3.0
3,997,215	+		IAI47_18735	0.80	-0.5
3,997,215	+		IAI47_18735	0.80	-0.6
3,997,216	-		IAI47_18735	0.80	-1.2
3,997,216	-		IAI47_18735	0.80	-2.9
3,997,263	+		IAI47_18735	0.86	+0.5
3,997,296	-				-1.0
3,997,358	-				+0.4
3,997,369	-				-0.9
3,997,392	+				+0.9
3,997,392	+				+0.5
3,997,392	+				+0.5
3,997,393	-				-1.1
3,997,393	-				-1.3
3,997,393	-				-1.9
3,997,393	-				-0.2
3,997,393	-				+0.0
3,997,393	-				+1.2
3,997,393	-				+0.2
3,997,415	-				-0.0
3,997,533	+		IAI47_18740	0.20	+0.3
3,997,533	+		IAI47_18740	0.20	-0.9
3,997,533	+		IAI47_18740	0.20	-0.7
3,997,533	+		IAI47_18740	0.20	-2.0
3,997,603	+		IAI47_18740	0.29	-0.4
3,997,603	+		IAI47_18740	0.29	-1.0
3,997,603	+		IAI47_18740	0.29	+0.2
3,997,604	-		IAI47_18740	0.29	-0.2
3,997,713	+		IAI47_18740	0.42	+1.5
3,997,713	+		IAI47_18740	0.42	-1.4
3,997,713	+		IAI47_18740	0.42	-1.4
3,997,877	-		IAI47_18740	0.62	+3.0
3,997,933	+		IAI47_18740	0.69	-0.7
3,997,933	+		IAI47_18740	0.69	-0.2
3,997,933	+		IAI47_18740	0.69	+1.7
3,997,934	-		IAI47_18740	0.69	+0.2
3,997,934	-		IAI47_18740	0.69	-1.1
3,997,934	-		IAI47_18740	0.69	-0.3
3,997,934	-		IAI47_18740	0.69	-1.2
3,997,967	-		IAI47_18740	0.73	-0.2
3,998,042	+		IAI47_18740	0.82	+0.2
3,998,042	+		IAI47_18740	0.82	-1.1
3,998,042	+		IAI47_18740	0.82	-2.8
3,998,042	+		IAI47_18740	0.82	+0.9
3,998,042	+		IAI47_18740	0.82	+0.1
3,998,042	+		IAI47_18740	0.82	-0.4
3,998,042	+		IAI47_18740	0.82	+1.0
3,998,042	+		IAI47_18740	0.82	-0.9
3,998,042	+		IAI47_18740	0.82	+0.8
3,998,043	-		IAI47_18740	0.82	+0.7
3,998,043	-		IAI47_18740	0.82	+0.4
3,998,043	-		IAI47_18740	0.82	-0.4
3,998,043	-		IAI47_18740	0.82	+2.3
3,998,043	-		IAI47_18740	0.82	-1.6
3,998,043	-		IAI47_18740	0.82	+1.2
3,998,043	-		IAI47_18740	0.82	-0.6
3,998,044	+		IAI47_18740	0.82	-0.9
3,998,044	+		IAI47_18740	0.82	+1.5
3,998,044	+		IAI47_18740	0.82	-2.5
3,998,044	+		IAI47_18740	0.82	+0.5
3,998,044	+		IAI47_18740	0.82	+0.7
3,998,044	+		IAI47_18740	0.82	-0.9
3,998,044	+		IAI47_18740	0.82	-0.1
3,998,044	+		IAI47_18740	0.82	-0.2
3,998,044	+		IAI47_18740	0.82	-0.3
3,998,044	+		IAI47_18740	0.82	+0.6
3,998,044	+		IAI47_18740	0.82	-0.3
3,998,044	+		IAI47_18740	0.82	-0.8
3,998,044	+		IAI47_18740	0.82	+1.4
3,998,044	+		IAI47_18740	0.82	+0.8
3,998,045	-		IAI47_18740	0.82	-1.6
3,998,045	-		IAI47_18740	0.82	+0.4
3,998,045	-		IAI47_18740	0.82	+0.7
3,998,045	-		IAI47_18740	0.82	+0.7
3,998,045	-		IAI47_18740	0.82	-1.7
3,998,045	-		IAI47_18740	0.82	-0.6
3,998,045	-		IAI47_18740	0.82	+2.6
3,998,045	-		IAI47_18740	0.82	-0.3
3,998,045	-		IAI47_18740	0.82	+0.0
3,998,050	+		IAI47_18740	0.83	-1.6
3,998,052	+		IAI47_18740	0.83	+0.7
3,998,052	+		IAI47_18740	0.83	+1.2
3,998,052	+		IAI47_18740	0.83	+0.5
3,998,052	+		IAI47_18740	0.83	+1.8
3,998,052	+		IAI47_18740	0.83	-0.3
3,998,052	+		IAI47_18740	0.83	+0.4
3,998,052	+		IAI47_18740	0.83	+0.2
3,998,052	-		IAI47_18740	0.83	+0.5
3,998,053	-		IAI47_18740	0.83	-0.2
3,998,053	-		IAI47_18740	0.83	+0.8
3,998,149	+				-0.6
3,998,182	+				-0.6
3,998,182	+				-0.4
3,998,183	-				-0.4
3,998,183	-				+0.2
3,998,195	+				+0.2
3,998,195	+				+0.8
3,998,196	-				-0.5
3,998,196	-				-0.5
3,998,208	+				+0.6
3,998,208	+				+0.1
3,998,209	-				-1.7
3,998,209	-				+1.0
3,998,209	-				-1.1
3,998,247	+				-1.3
3,998,247	+				+0.1
3,998,248	-				+0.4
3,998,248	-				-0.4
3,998,248	-				+0.9
3,998,248	-				+1.3
3,998,248	-				+1.1
3,998,271	+				+1.4
3,998,272	-				-1.0
3,998,290	+				+0.6
3,998,290	+				-0.3
3,998,291	-				+0.7
3,998,330	-				-0.1
3,998,330	-				-0.6
3,998,330	-				+0.6