Strain Fitness in Pantoea sp. MT58 around IAI47_16445

Experiment: Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
3,482,084	-				+1.4
3,482,096	-				-2.5
3,482,096	-				+0.6
3,482,109	+				-1.3
3,482,120	-				-0.3
3,482,137	+				-0.2
3,482,137	+				+2.1
3,482,172	-		IAI47_16440	0.12	+0.2
3,482,172	-		IAI47_16440	0.12	-0.1
3,482,172	-		IAI47_16440	0.12	+0.7
3,482,191	+		IAI47_16440	0.14	-1.6
3,482,191	+		IAI47_16440	0.14	+0.1
3,482,191	+		IAI47_16440	0.14	-1.4
3,482,191	+		IAI47_16440	0.14	+0.7
3,482,191	+		IAI47_16440	0.14	-1.8
3,482,191	+		IAI47_16440	0.14	+0.9
3,482,192	-		IAI47_16440	0.14	-1.0
3,482,192	-		IAI47_16440	0.14	-0.6
3,482,192	-		IAI47_16440	0.14	+0.2
3,482,192	-		IAI47_16440	0.14	+0.9
3,482,315	-		IAI47_16440	0.26	-0.9
3,482,341	+		IAI47_16440	0.28	+0.5
3,482,341	+		IAI47_16440	0.28	+0.6
3,482,383	+		IAI47_16440	0.32	-0.2
3,482,383	+		IAI47_16440	0.32	-0.4
3,482,383	+		IAI47_16440	0.32	+0.3
3,482,383	+		IAI47_16440	0.32	-0.1
3,482,384	-		IAI47_16440	0.33	-0.4
3,482,384	-		IAI47_16440	0.33	+0.1
3,482,384	-		IAI47_16440	0.33	+1.4
3,482,384	-		IAI47_16440	0.33	+0.1
3,482,410	+		IAI47_16440	0.35	-0.2
3,482,423	-		IAI47_16440	0.36	+0.7
3,482,447	+		IAI47_16440	0.39	-0.9
3,482,448	-		IAI47_16440	0.39	+0.1
3,482,543	+		IAI47_16440	0.48	+1.0
3,482,543	+		IAI47_16440	0.48	-0.4
3,482,544	-		IAI47_16440	0.48	+0.3
3,482,547	-		IAI47_16440	0.49	-0.6
3,482,626	+		IAI47_16440	0.56	-0.4
3,482,681	+		IAI47_16440	0.62	+0.5
3,482,681	+		IAI47_16440	0.62	-2.6
3,482,682	-		IAI47_16440	0.62	-0.3
3,482,682	-		IAI47_16440	0.62	+1.1
3,482,682	-		IAI47_16440	0.62	+0.8
3,482,682	-		IAI47_16440	0.62	+0.7
3,482,708	+		IAI47_16440	0.64	+1.9
3,482,731	+		IAI47_16440	0.67	+0.7
3,482,732	-		IAI47_16440	0.67	-0.1
3,482,732	-		IAI47_16440	0.67	-0.3
3,482,738	-		IAI47_16440	0.67	+0.2
3,482,789	+		IAI47_16440	0.72	+1.6
3,482,807	+		IAI47_16440	0.74	-0.4
3,482,807	+		IAI47_16440	0.74	+0.2
3,482,808	-		IAI47_16440	0.74	+0.4
3,482,808	-		IAI47_16440	0.74	-0.0
3,482,808	-		IAI47_16440	0.74	-0.4
3,482,815	+		IAI47_16440	0.75	+1.2
3,482,837	+		IAI47_16440	0.77	-0.7
3,482,837	+		IAI47_16440	0.77	+0.0
3,482,837	+		IAI47_16440	0.77	+0.1
3,482,840	+		IAI47_16440	0.78	+0.6
3,482,840	+		IAI47_16440	0.78	+1.4
3,482,840	+		IAI47_16440	0.78	+0.2
3,482,841	-		IAI47_16440	0.78	+0.4
3,482,841	-		IAI47_16440	0.78	-3.2
3,482,841	-		IAI47_16440	0.78	+0.6
3,482,850	+		IAI47_16440	0.79	+0.6
3,482,850	+		IAI47_16440	0.79	+0.2
3,482,850	+		IAI47_16440	0.79	+0.5
3,482,850	+		IAI47_16440	0.79	+0.5
3,482,851	-		IAI47_16440	0.79	+0.6
3,482,851	-		IAI47_16440	0.79	+0.2
3,482,923	+		IAI47_16440	0.86	+0.3
3,482,981	+				-2.0
3,482,981	+				-2.2
3,482,981	+				-0.0
3,482,981	+				-1.2
3,482,981	+				-0.3
3,482,981	+				-0.2
3,482,981	+				+0.4
3,482,982	-				+1.0
3,482,982	-				+1.6
3,482,982	-				-1.0
3,482,983	+				-1.0
3,482,983	+				-1.4
3,482,984	-				-0.6
3,483,066	-				+2.6
3,483,184	+		IAI47_16445	0.15	-1.2
3,483,260	+		IAI47_16445	0.24	+1.6
3,483,261	-		IAI47_16445	0.24	-2.4
3,483,369	+		IAI47_16445	0.35	-0.1
3,483,369	+		IAI47_16445	0.35	-1.0
3,483,369	+		IAI47_16445	0.35	+1.4
3,483,370	-		IAI47_16445	0.36	-0.4
3,483,372	+		IAI47_16445	0.36	+0.6
3,483,372	+		IAI47_16445	0.36	+0.7
3,483,372	+		IAI47_16445	0.36	-0.4
3,483,373	-		IAI47_16445	0.36	+1.1
3,483,373	-		IAI47_16445	0.36	+0.7
3,483,373	-		IAI47_16445	0.36	+1.4
3,483,373	-		IAI47_16445	0.36	+0.1
3,483,470	+		IAI47_16445	0.46	+1.6
3,483,592	-		IAI47_16445	0.60	+2.5
3,483,798	-		IAI47_16445	0.82	+0.8
3,483,798	-		IAI47_16445	0.82	-3.7
3,483,908	+				-0.4
3,483,908	+				-0.0
3,483,909	-				-2.3
3,483,975	+				+0.9
3,483,975	+				-1.4
3,483,978	-				+0.2
3,484,020	-				-0.6
3,484,033	+				-0.8
3,484,033	+				-1.3
3,484,034	-				+0.3
3,484,034	-				-1.5
3,484,034	-				+1.7
3,484,039	+				+0.9
3,484,040	-				+1.0
3,484,042	+				+1.4
3,484,042	+				-0.5
3,484,042	+				-0.4
3,484,042	+				-2.2
3,484,042	+				-0.4
3,484,043	-				+2.2
3,484,043	-				-1.9
3,484,043	-				+0.2
3,484,043	-				-0.1
3,484,043	-				+0.8
3,484,064	-				+0.3
3,484,087	+				-0.6
3,484,087	+				+1.1
3,484,117	+		IAI47_16450	0.14	-0.3
3,484,117	+		IAI47_16450	0.14	-0.7
3,484,117	+		IAI47_16450	0.14	+1.5
3,484,117	+		IAI47_16450	0.14	-0.4
3,484,117	+		IAI47_16450	0.14	-0.4
3,484,117	+		IAI47_16450	0.14	+0.0
3,484,117	+		IAI47_16450	0.14	-1.1
3,484,117	+		IAI47_16450	0.14	+1.0
3,484,117	+		IAI47_16450	0.14	-3.1
3,484,117	+		IAI47_16450	0.14	+3.9
3,484,117	+		IAI47_16450	0.14	+0.6
3,484,118	-		IAI47_16450	0.14	-0.4
3,484,118	-		IAI47_16450	0.14	-0.5
3,484,118	-		IAI47_16450	0.14	-3.5
3,484,118	-		IAI47_16450	0.14	+0.1
3,484,118	-		IAI47_16450	0.14	-1.2
3,484,122	+		IAI47_16450	0.15	-0.3
3,484,122	+		IAI47_16450	0.15	-0.8
3,484,123	-		IAI47_16450	0.15	-0.0
3,484,123	-		IAI47_16450	0.15	-0.0
3,484,159	+		IAI47_16450	0.24	+0.7
3,484,208	+		IAI47_16450	0.37	-0.3
3,484,243	+		IAI47_16450	0.46	-0.0
3,484,243	+		IAI47_16450	0.46	-0.4
3,484,255	+		IAI47_16450	0.49	+1.0
3,484,255	+		IAI47_16450	0.49	-1.4
3,484,264	-		IAI47_16450	0.51	-2.5
3,484,277	+		IAI47_16450	0.55	-0.7
3,484,277	+		IAI47_16450	0.55	-0.4
3,484,277	+		IAI47_16450	0.55	+0.4
3,484,277	+		IAI47_16450	0.55	+1.7
3,484,278	-		IAI47_16450	0.55	+0.2
3,484,278	-		IAI47_16450	0.55	-0.1
3,484,278	-		IAI47_16450	0.55	-1.1
3,484,280	-		IAI47_16450	0.55	+0.9
3,484,280	-		IAI47_16450	0.55	-1.4
3,484,280	-		IAI47_16450	0.55	+1.3
3,484,315	+		IAI47_16450	0.64	-0.6
3,484,315	+		IAI47_16450	0.64	+0.3
3,484,356	+		IAI47_16450	0.75	-1.9
3,484,356	+		IAI47_16450	0.75	-1.9
3,484,356	+		IAI47_16450	0.75	+0.7
3,484,357	-		IAI47_16450	0.75	+2.8
3,484,357	-		IAI47_16450	0.75	-0.1
3,484,371	+		IAI47_16450	0.79	+1.1
3,484,372	-		IAI47_16450	0.79	-0.6
3,484,384	+		IAI47_16450	0.82	+0.6
3,484,384	+		IAI47_16450	0.82	+0.1
3,484,384	+		IAI47_16450	0.82	-2.6
3,484,433	+				+0.7
3,484,433	+				-1.8
3,484,433	+				+0.2
3,484,433	+				+1.6
3,484,433	+				+0.2
3,484,433	+				-0.4
3,484,434	-				+0.5
3,484,434	-				+0.6
3,484,434	-				-1.4
3,484,434	-				+0.1
3,484,434	-				-0.4
3,484,434	-				-0.6
3,484,511	-				-0.9
3,484,534	+				+0.5
3,484,534	+				+0.7
3,484,535	-				-0.8
3,484,535	-				+1.1
3,484,571	+				+1.1
3,484,571	+				-0.6
3,484,596	+				+1.6
3,484,596	+				+0.3
3,484,596	+				-0.1
3,484,598	+				-0.2
3,484,598	+				+0.9
3,484,598	+				+0.4
3,484,598	+				-0.1
3,484,598	+				-1.4
3,484,598	+				+2.1
3,484,598	+				+0.2
3,484,598	+				-1.2
3,484,598	+				-2.0
3,484,599	-				+0.0
3,484,599	-				+0.6
3,484,599	-				+1.2
3,484,599	-				-0.8
3,484,599	-				-2.0
3,484,599	-				+0.2
3,484,599	-				-1.6
3,484,599	-				-2.2
3,484,599	-				+0.3
3,484,599	-				+1.0
3,484,599	-				+0.3
3,484,599	-				+0.4
3,484,599	-				-2.8
3,484,713	+				-0.2
3,484,723	+				-1.0
3,484,723	+				+1.7
3,484,723	+				+0.1
3,484,723	+				-0.3
3,484,723	+				-0.8
3,484,723	+				+0.0
3,484,723	+				+0.4
3,484,724	-				-0.3
3,484,724	-				-1.5
3,484,724	-				+1.1
3,484,724	-				+0.1
3,484,724	-				-1.6
3,484,724	-				+1.4
3,484,724	-				-1.0
3,484,724	-				-0.9
3,484,731	+				+0.0
3,484,731	+				-0.4
3,484,732	-				+0.7
3,484,732	-				+0.3
3,484,743	+				+0.8
3,484,758	+				+0.1
3,484,759	-				-0.2
3,484,759	-				-2.0
3,484,759	-				-0.8
3,484,759	-				+0.2
3,484,759	-				+0.4
3,484,759	-				-1.6
3,484,810	+				-0.7
3,484,810	+				+0.8
3,484,811	-				+1.9
3,484,811	-				-2.8
3,484,811	-				+0.2
3,484,811	-				-0.4
3,484,811	-				-0.6
3,484,822	+				-0.1
3,484,822	+				+1.0
3,484,822	+				-0.8
3,484,823	-				-0.9
3,484,823	-				-0.3
3,484,828	-				-2.0
3,484,858	+				-0.4
3,484,858	+				+1.9
3,484,858	+				+0.3
3,484,858	+				-0.3
3,484,858	+				-0.4
3,484,858	+				+0.0
3,484,859	-				+0.3
3,484,859	-				-2.1
3,484,859	-				+0.9
3,484,859	-				+0.3
3,484,859	-				-0.4
3,484,859	-				-0.5
3,484,859	-				-2.0
3,484,859	-				-2.1
3,484,860	+				-0.4
3,484,860	+				-2.3
3,484,860	+				+0.6
3,484,861	-				+0.9
3,484,861	-				-0.7
3,484,872	+				-0.4
3,484,873	-				-0.3
3,484,873	-				-1.2
3,484,896	+				+0.1
3,484,896	+				+0.2
3,484,897	-				+1.1
3,484,900	+				-0.1
3,484,900	+				-0.1
3,484,900	+				-1.8
3,484,900	+				-3.1
3,484,900	+				-0.0
3,484,901	-				-0.1
3,484,901	-				-1.8
3,484,901	-				+0.3
3,484,901	-				+2.0
3,484,901	-				-1.2
3,484,901	-				+0.9
3,484,931	+		IAI47_16455	0.11	-0.2
3,484,931	+		IAI47_16455	0.11	-0.5
3,484,932	-		IAI47_16455	0.11	+0.6
3,484,932	-		IAI47_16455	0.11	+1.0