Strain Fitness in Pantoea sp. MT58 around IAI47_16045

Experiment: Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
3,388,979	+		IAI47_16035	0.88	-1.9
3,388,979	+		IAI47_16035	0.88	-1.8
3,388,979	+		IAI47_16035	0.88	+0.4
3,389,048	-				+0.3
3,389,071	+				-0.0
3,389,072	-				+0.8
3,389,105	+				-0.2
3,389,105	+				+0.1
3,389,105	+				+0.4
3,389,105	+				+0.1
3,389,106	-				+0.1
3,389,106	-				+0.5
3,389,106	-				-0.8
3,389,106	-				-0.3
3,389,108	+				-0.2
3,389,108	+				-1.3
3,389,108	+				+0.6
3,389,123	+				+0.4
3,389,123	+				+0.4
3,389,124	-				+1.7
3,389,124	-				+1.6
3,389,124	-				-1.2
3,389,177	-				+2.7
3,389,186	+				-0.7
3,389,186	+				-0.4
3,389,186	+				+1.1
3,389,186	+				+0.6
3,389,187	-				-0.6
3,389,192	+				-0.6
3,389,193	-				+0.0
3,389,425	-		IAI47_16040	0.37	-2.4
3,389,425	-		IAI47_16040	0.37	-1.3
3,389,517	+		IAI47_16040	0.51	-0.4
3,389,517	+		IAI47_16040	0.51	+0.6
3,389,518	-		IAI47_16040	0.51	-2.5
3,389,704	+		IAI47_16040	0.77	-1.1
3,389,704	+		IAI47_16040	0.77	+0.6
3,389,704	+		IAI47_16040	0.77	+1.1
3,389,704	+		IAI47_16040	0.77	+0.8
3,389,704	+		IAI47_16040	0.77	-0.5
3,389,704	+		IAI47_16040	0.77	-0.4
3,389,704	+		IAI47_16040	0.77	-0.1
3,389,704	+		IAI47_16040	0.77	+0.3
3,389,704	+		IAI47_16040	0.77	+0.4
3,389,704	+		IAI47_16040	0.77	-1.8
3,389,704	+		IAI47_16040	0.77	-0.8
3,389,705	-		IAI47_16040	0.77	+1.1
3,389,705	-		IAI47_16040	0.77	+0.9
3,389,705	-		IAI47_16040	0.77	+1.0
3,389,763	+		IAI47_16040	0.86	+2.1
3,389,763	+		IAI47_16040	0.86	-0.0
3,389,764	-		IAI47_16040	0.86	+1.6
3,389,764	-		IAI47_16040	0.86	+0.0
3,389,787	-		IAI47_16040	0.89	+0.0
3,389,787	-		IAI47_16040	0.89	-2.0
3,389,861	+				-0.4
3,389,869	-				+0.6
3,390,050	+		IAI47_16045	0.24	-0.4
3,390,050	+		IAI47_16045	0.24	-0.3
3,390,050	+		IAI47_16045	0.24	+1.0
3,390,068	+		IAI47_16045	0.26	-0.8
3,390,069	-		IAI47_16045	0.26	+2.6
3,390,069	-		IAI47_16045	0.26	+0.8
3,390,089	+		IAI47_16045	0.29	+1.6
3,390,089	+		IAI47_16045	0.29	-0.0
3,390,089	+		IAI47_16045	0.29	-1.4
3,390,090	-		IAI47_16045	0.29	+1.4
3,390,090	-		IAI47_16045	0.29	+1.6
3,390,101	-		IAI47_16045	0.31	+0.5
3,390,101	-		IAI47_16045	0.31	-1.0
3,390,154	+		IAI47_16045	0.38	+1.1
3,390,154	+		IAI47_16045	0.38	+0.8
3,390,154	+		IAI47_16045	0.38	-0.3
3,390,155	-		IAI47_16045	0.38	+0.2
3,390,169	+		IAI47_16045	0.39	-1.2
3,390,169	-		IAI47_16045	0.39	-1.4
3,390,268	+		IAI47_16045	0.52	-1.9
3,390,268	+		IAI47_16045	0.52	+1.3
3,390,268	+		IAI47_16045	0.52	+0.4
3,390,269	-		IAI47_16045	0.53	+0.3
3,390,269	-		IAI47_16045	0.53	-0.1
3,390,298	+		IAI47_16045	0.56	+0.8
3,390,298	+		IAI47_16045	0.56	+0.7
3,390,335	-		IAI47_16045	0.61	+0.7
3,390,352	-		IAI47_16045	0.63	-0.0
3,390,363	+		IAI47_16045	0.65	-0.2
3,390,363	+		IAI47_16045	0.65	+0.6
3,390,364	-		IAI47_16045	0.65	+1.4
3,390,364	-		IAI47_16045	0.65	+0.1
3,390,364	-		IAI47_16045	0.65	+1.5
3,390,408	+		IAI47_16045	0.71	+0.1
3,390,409	-		IAI47_16045	0.71	-0.4
3,390,517	+		IAI47_16045	0.85	+0.7
3,390,517	+		IAI47_16045	0.85	+0.8
3,390,517	+		IAI47_16045	0.85	+1.6
3,390,517	+		IAI47_16045	0.85	+0.4
3,390,518	-		IAI47_16045	0.85	+1.1
3,390,518	-		IAI47_16045	0.85	-0.4
3,390,518	-		IAI47_16045	0.85	-2.0
3,390,604	+				+2.0
3,390,604	+				-0.4
3,390,605	-				-0.2
3,390,605	-				-0.4
3,390,632	-				-0.9
3,390,632	-				-0.7
3,390,632	-				+0.2
3,390,632	-				+1.6
3,390,640	+				+0.3
3,390,640	+				-1.1
3,390,641	-				+1.3
3,390,641	-				+1.0
3,390,641	-				-0.0
3,390,641	-				+1.1
3,390,641	-				+1.6
3,390,641	-				+0.2
3,390,641	-				+0.6
3,390,644	+				+2.4
3,390,644	+				+1.4
3,390,701	-				-0.6
3,390,736	+				+0.9
3,390,736	+				-0.1
3,390,737	-				-1.8
3,390,738	+				+1.5
3,390,738	+				-0.8
3,390,739	-				-1.0
3,390,739	-				+1.6
3,390,739	-				-2.2
3,390,752	-				-0.4
3,390,753	+				-2.3
3,390,754	-				-0.4
3,390,754	-				-0.0
3,390,757	+				+0.2
3,390,758	-				-0.9
3,390,758	-				+0.6
3,390,758	-				+0.1
3,390,758	-				-1.9
3,390,781	+				-0.0
3,390,781	+				+1.3
3,390,781	+				+2.4
3,390,782	-				-1.1
3,390,782	-				+0.6
3,390,782	-				+0.3
3,390,782	-				-0.4
3,390,805	+				+1.7
3,390,806	-				-0.3
3,390,868	+				+0.0
3,390,869	-				+0.4
3,390,869	-				-1.1
3,390,938	-				+0.1
3,390,938	-				-1.4
3,391,049	+		IAI47_16050	0.11	-0.6
3,391,050	-		IAI47_16050	0.11	-0.5
3,391,050	-		IAI47_16050	0.11	-0.2
3,391,050	-		IAI47_16050	0.11	-0.4
3,391,115	+		IAI47_16050	0.13	-0.3
3,391,115	+		IAI47_16050	0.13	-1.4
3,391,115	+		IAI47_16050	0.13	+0.4
3,391,115	+		IAI47_16050	0.13	-2.0
3,391,116	-		IAI47_16050	0.13	-0.7
3,391,116	-		IAI47_16050	0.13	-0.6
3,391,116	-		IAI47_16050	0.13	+0.2
3,391,116	-		IAI47_16050	0.13	-0.9
3,391,116	-		IAI47_16050	0.13	-0.0
3,391,116	-		IAI47_16050	0.13	+0.3
3,391,162	+		IAI47_16050	0.15	+1.6
3,391,163	-		IAI47_16050	0.15	+2.0
3,391,204	+		IAI47_16050	0.17	-1.6
3,391,205	-		IAI47_16050	0.17	-0.6
3,391,205	-		IAI47_16050	0.17	-1.8
3,391,209	+		IAI47_16050	0.17	+1.9
3,391,209	+		IAI47_16050	0.17	-3.0
3,391,209	+		IAI47_16050	0.17	-0.1
3,391,209	+		IAI47_16050	0.17	+1.1
3,391,209	+		IAI47_16050	0.17	-1.5
3,391,210	-		IAI47_16050	0.17	+0.4
3,391,210	-		IAI47_16050	0.17	-1.9
3,391,210	-		IAI47_16050	0.17	-2.5
3,391,273	+		IAI47_16050	0.20	+0.6
3,391,301	+		IAI47_16050	0.21	-0.7
3,391,301	+		IAI47_16050	0.21	+2.1
3,391,301	+		IAI47_16050	0.21	+3.5
3,391,302	-		IAI47_16050	0.21	+1.1
3,391,340	+		IAI47_16050	0.23	-1.6
3,391,340	+		IAI47_16050	0.23	-0.8
3,391,340	+		IAI47_16050	0.23	+0.0
3,391,340	+		IAI47_16050	0.23	-0.7
3,391,340	+		IAI47_16050	0.23	+0.6
3,391,341	-		IAI47_16050	0.23	-1.9
3,391,341	-		IAI47_16050	0.23	-0.9
3,391,342	+		IAI47_16050	0.23	+1.8
3,391,342	+		IAI47_16050	0.23	+1.8
3,391,342	+		IAI47_16050	0.23	-1.9
3,391,342	+		IAI47_16050	0.23	+0.2
3,391,343	-		IAI47_16050	0.23	-1.6
3,391,343	-		IAI47_16050	0.23	-1.0
3,391,343	-		IAI47_16050	0.23	-1.2
3,391,394	+		IAI47_16050	0.25	+1.4
3,391,395	-		IAI47_16050	0.25	+0.6
3,391,395	-		IAI47_16050	0.25	-0.6
3,391,585	+		IAI47_16050	0.33	+0.8
3,391,585	+		IAI47_16050	0.33	+0.3
3,391,627	+		IAI47_16050	0.35	+0.7
3,391,628	-		IAI47_16050	0.35	+1.1
3,391,628	-		IAI47_16050	0.35	-1.4
3,391,628	-		IAI47_16050	0.35	+1.6
3,391,628	-		IAI47_16050	0.35	+0.1