Strain Fitness in Pantoea sp. MT58 around IAI47_15240

Experiment: Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
3,212,550	+		IAI47_15230	0.15	-1.0
3,212,550	+		IAI47_15230	0.15	-0.1
3,212,568	+		IAI47_15230	0.17	-0.4
3,212,569	-		IAI47_15230	0.17	+0.6
3,212,569	-		IAI47_15230	0.17	+1.0
3,212,569	-		IAI47_15230	0.17	-1.7
3,212,705	+		IAI47_15230	0.35	+0.3
3,212,749	+		IAI47_15230	0.41	+0.8
3,212,749	+		IAI47_15230	0.41	-1.9
3,212,749	+		IAI47_15230	0.41	+0.7
3,212,750	-		IAI47_15230	0.41	-0.2
3,212,750	-		IAI47_15230	0.41	-0.6
3,212,750	-		IAI47_15230	0.41	-2.1
3,212,773	-		IAI47_15230	0.44	-3.6
3,212,795	-		IAI47_15230	0.47	-0.3
3,212,861	-		IAI47_15230	0.55	-0.6
3,212,917	+		IAI47_15230	0.62	-0.4
3,212,917	+		IAI47_15230	0.62	-1.0
3,212,917	+		IAI47_15230	0.62	+0.7
3,212,917	+		IAI47_15230	0.62	-0.0
3,212,917	+		IAI47_15230	0.62	-0.9
3,212,917	+		IAI47_15230	0.62	-0.0
3,212,917	+		IAI47_15230	0.62	+2.8
3,212,917	+		IAI47_15230	0.62	-1.6
3,212,917	+		IAI47_15230	0.62	-1.3
3,212,917	+		IAI47_15230	0.62	+0.3
3,212,918	-		IAI47_15230	0.63	-0.1
3,212,918	-		IAI47_15230	0.63	+1.0
3,212,963	+		IAI47_15230	0.68	-1.4
3,212,963	+		IAI47_15230	0.68	-0.6
3,212,964	-		IAI47_15230	0.69	+0.7
3,212,995	+		IAI47_15230	0.73	-0.4
3,212,995	+		IAI47_15230	0.73	+0.8
3,212,995	+		IAI47_15230	0.73	+0.5
3,212,995	+		IAI47_15230	0.73	+0.2
3,212,996	-		IAI47_15230	0.73	-0.7
3,212,996	-		IAI47_15230	0.73	+0.9
3,212,996	-		IAI47_15230	0.73	+0.5
3,212,996	-		IAI47_15230	0.73	+0.1
3,213,009	+		IAI47_15230	0.74	+0.9
3,213,043	+		IAI47_15230	0.79	-0.7
3,213,043	+		IAI47_15230	0.79	+0.8
3,213,043	+		IAI47_15230	0.79	-2.9
3,213,043	+		IAI47_15230	0.79	-0.4
3,213,044	-		IAI47_15230	0.79	-0.6
3,213,064	-		IAI47_15230	0.82	+2.2
3,213,064	-		IAI47_15230	0.82	+0.1
3,213,155	-				+2.2
3,213,202	+				+0.6
3,213,218	-				-1.4
3,213,320	-		IAI47_15235	0.31	+2.0
3,213,320	-		IAI47_15235	0.31	-1.0
3,213,320	-		IAI47_15235	0.31	+1.4
3,213,349	+		IAI47_15235	0.40	+2.7
3,213,350	-		IAI47_15235	0.40	-1.6
3,213,350	-		IAI47_15235	0.40	+0.5
3,213,376	+		IAI47_15235	0.48	-0.3
3,213,377	-		IAI47_15235	0.48	+0.6
3,213,377	-		IAI47_15235	0.48	+2.7
3,213,509	+		IAI47_15235	0.87	-0.3
3,213,530	+				-1.0
3,213,530	+				-2.3
3,213,530	+				+2.3
3,213,530	+				-3.0
3,213,530	+				+0.7
3,213,531	-				-1.2
3,213,531	-				+1.5
3,213,566	-				-0.9
3,213,572	+				-1.0
3,213,573	-				-1.6
3,213,580	+				-1.4
3,213,581	-				-2.3
3,213,628	+		IAI47_15240	0.16	-1.6
3,213,629	-		IAI47_15240	0.16	+2.3
3,213,720	+		IAI47_15240	0.35	-2.0
3,213,720	+		IAI47_15240	0.35	-0.7
3,213,720	+		IAI47_15240	0.35	+0.5
3,213,721	-		IAI47_15240	0.35	+1.1
3,213,721	-		IAI47_15240	0.35	+0.5
3,213,721	-		IAI47_15240	0.35	-0.4
3,213,727	+		IAI47_15240	0.36	-1.7
3,213,727	+		IAI47_15240	0.36	-0.8
3,213,727	+		IAI47_15240	0.36	-0.9
3,213,728	-		IAI47_15240	0.36	-0.3
3,213,760	-		IAI47_15240	0.43	-0.7
3,213,760	-		IAI47_15240	0.43	-3.5
3,213,760	-		IAI47_15240	0.43	-0.2
3,213,801	-		IAI47_15240	0.51	-0.2
3,213,801	-		IAI47_15240	0.51	+0.7
3,213,801	-		IAI47_15240	0.51	-0.4
3,213,914	+		IAI47_15240	0.74	+0.9
3,214,024	+				+0.4
3,214,024	+				+3.5
3,214,024	+				-1.0
3,214,025	-				+0.3
3,214,025	-				-2.1
3,214,035	-				-1.7
3,214,035	-				-0.4
3,214,043	-				-0.9
3,214,047	+				-0.5
3,214,047	+				-2.0
3,214,048	-				-0.0
3,214,083	+				-2.1
3,214,083	+				-0.1
3,214,156	+				+0.1
3,214,156	+				-0.6
3,214,156	+				-0.6
3,214,166	+				-1.0
3,214,166	+				+0.6
3,214,166	+				-0.9
3,214,166	+				-1.2
3,214,166	+				+0.9
3,214,166	+				-1.7
3,214,167	-				-1.4
3,214,167	-				-0.9
3,214,167	-				-0.2
3,214,167	-				+0.3
3,214,167	-				+0.4
3,214,167	-				+1.2
3,214,196	-		IAI47_15245	0.12	-1.9
3,214,237	+		IAI47_15245	0.15	-0.1
3,214,238	-		IAI47_15245	0.15	+0.3
3,214,238	-		IAI47_15245	0.15	+0.8
3,214,238	-		IAI47_15245	0.15	-0.3
3,214,238	-		IAI47_15245	0.15	-1.4
3,214,300	+		IAI47_15245	0.20	-2.3
3,214,301	-		IAI47_15245	0.20	+0.2
3,214,314	+		IAI47_15245	0.21	-0.2
3,214,317	+		IAI47_15245	0.22	-3.0
3,214,318	-		IAI47_15245	0.22	-0.1
3,214,318	-		IAI47_15245	0.22	+1.5
3,214,318	-		IAI47_15245	0.22	-0.2
3,214,374	-		IAI47_15245	0.26	+0.7
3,214,439	+		IAI47_15245	0.31	+0.8
3,214,439	+		IAI47_15245	0.31	+2.0
3,214,439	+		IAI47_15245	0.31	+1.6
3,214,440	-		IAI47_15245	0.31	+2.2
3,214,440	-		IAI47_15245	0.31	+3.2
3,214,480	+		IAI47_15245	0.35	-0.9
3,214,480	+		IAI47_15245	0.35	-0.5
3,214,480	+		IAI47_15245	0.35	-1.7
3,214,481	-		IAI47_15245	0.35	-1.2
3,214,481	-		IAI47_15245	0.35	+1.2
3,214,651	+		IAI47_15245	0.48	+1.9
3,214,725	+		IAI47_15245	0.54	-0.1
3,214,735	+		IAI47_15245	0.55	-1.6
3,214,810	+		IAI47_15245	0.61	+1.6
3,214,810	+		IAI47_15245	0.61	+0.8
3,214,810	+		IAI47_15245	0.61	+2.7
3,214,811	-		IAI47_15245	0.61	+0.3
3,214,811	-		IAI47_15245	0.61	-0.1
3,214,811	-		IAI47_15245	0.61	-0.7
3,214,811	-		IAI47_15245	0.61	-0.1
3,214,886	-		IAI47_15245	0.67	+1.0
3,214,886	-		IAI47_15245	0.67	-1.0
3,214,973	+		IAI47_15245	0.74	-0.8
3,214,973	+		IAI47_15245	0.74	-0.0
3,214,973	+		IAI47_15245	0.74	+0.4
3,214,973	+		IAI47_15245	0.74	+0.6
3,214,973	+		IAI47_15245	0.74	+1.6