Strain Fitness in Pantoea sp. MT58 around IAI47_11800

Experiment: Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
2,502,689	-		IAI47_11795	0.43	-1.8
2,502,689	-		IAI47_11795	0.43	+2.6
2,502,689	-		IAI47_11795	0.43	-0.4
2,502,689	-		IAI47_11795	0.43	-1.8
2,502,808	+		IAI47_11795	0.57	-1.8
2,502,812	+		IAI47_11795	0.57	-0.2
2,502,876	+		IAI47_11795	0.65	+0.4
2,502,876	+		IAI47_11795	0.65	-0.5
2,502,877	-				-1.0
2,502,903	+		IAI47_11795	0.68	+1.9
2,502,927	+		IAI47_11795	0.71	+1.0
2,502,927	+		IAI47_11795	0.71	-0.7
2,502,928	-		IAI47_11795	0.71	+1.0
2,502,928	-		IAI47_11795	0.71	+0.8
2,502,931	-		IAI47_11795	0.72	+0.8
2,502,963	+		IAI47_11795	0.76	-0.6
2,502,963	+		IAI47_11795	0.76	-1.8
2,502,963	+		IAI47_11795	0.76	+0.3
2,502,963	+		IAI47_11795	0.76	-1.2
2,502,963	+		IAI47_11795	0.76	+1.6
2,502,963	+		IAI47_11795	0.76	+0.7
2,502,963	+		IAI47_11795	0.76	+0.1
2,502,963	+		IAI47_11795	0.76	-0.5
2,502,963	+		IAI47_11795	0.76	+1.1
2,502,963	+		IAI47_11795	0.76	-1.0
2,502,963	+		IAI47_11795	0.76	+0.3
2,502,963	+		IAI47_11795	0.76	+0.6
2,502,963	+		IAI47_11795	0.76	+0.2
2,502,964	-		IAI47_11795	0.76	+1.2
2,502,964	-		IAI47_11795	0.76	-1.5
2,502,964	-		IAI47_11795	0.76	+0.9
2,502,964	-		IAI47_11795	0.76	-0.1
2,502,964	-		IAI47_11795	0.76	-0.4
2,502,964	-		IAI47_11795	0.76	+1.9
2,502,964	-		IAI47_11795	0.76	-1.4
2,502,964	-		IAI47_11795	0.76	+2.8
2,502,964	-		IAI47_11795	0.76	-0.8
2,503,020	+		IAI47_11795	0.82	+0.0
2,503,020	+		IAI47_11795	0.82	-0.7
2,503,021	-		IAI47_11795	0.83	+0.3
2,503,165	+				-0.8
2,503,165	+				+0.8
2,503,165	+				+1.6
2,503,166	-				+0.6
2,503,166	-				-1.2
2,503,166	-				-0.4
2,503,166	-				-0.0
2,503,166	-				+1.9
2,503,166	-				-0.7
2,503,166	-				-1.0
2,503,166	-				-0.0
2,503,170	+				+0.0
2,503,171	-				+1.2
2,503,171	-				+4.0
2,503,199	-				-1.5
2,503,200	+				+1.1
2,503,203	-				+2.0
2,503,232	-				-0.1
2,503,232	-				+1.7
2,503,249	-				+0.6
2,503,254	+				-1.1
2,503,254	+				-1.0
2,503,254	+				-1.0
2,503,254	+				+0.5
2,503,255	-				-0.4
2,503,255	-				-0.3
2,503,255	-				-1.0
2,503,255	-				+0.3
2,503,255	-				-0.1
2,503,255	-				-1.0
2,503,307	+				-0.1
2,503,307	+				-1.2
2,503,308	-				+0.8
2,503,308	-				-0.3
2,503,308	-				-0.5
2,503,308	-				-0.2
2,503,308	-				+0.8
2,503,308	-				+0.4
2,503,321	+				+0.0
2,503,322	-				-1.7
2,503,348	+				-1.4
2,503,386	+				+0.3
2,503,387	-				+0.5
2,503,387	-				-0.3
2,503,718	+		IAI47_11800	0.33	+0.8
2,503,718	+		IAI47_11800	0.33	+1.6
2,503,719	-		IAI47_11800	0.33	-0.2
2,503,719	-		IAI47_11800	0.33	-0.7
2,503,719	-		IAI47_11800	0.33	+0.6
2,503,719	-		IAI47_11800	0.33	+0.9
2,503,719	-		IAI47_11800	0.33	+1.0
2,503,721	-		IAI47_11800	0.33	-0.8
2,503,721	-		IAI47_11800	0.33	+0.0
2,503,721	-		IAI47_11800	0.33	+0.3
2,503,721	-		IAI47_11800	0.33	-1.8
2,503,826	+		IAI47_11800	0.42	+3.1
2,503,827	-		IAI47_11800	0.43	-1.2
2,503,828	+		IAI47_11800	0.43	+0.3
2,503,828	+		IAI47_11800	0.43	+0.8
2,503,828	+		IAI47_11800	0.43	-0.4
2,503,828	+		IAI47_11800	0.43	+1.6
2,503,828	+		IAI47_11800	0.43	-0.5
2,503,829	-		IAI47_11800	0.43	+1.7
2,503,829	-		IAI47_11800	0.43	-1.2
2,503,829	-		IAI47_11800	0.43	+1.6
2,503,829	-		IAI47_11800	0.43	+0.6
2,503,829	-		IAI47_11800	0.43	+0.0
2,503,829	-		IAI47_11800	0.43	+2.9
2,503,870	+		IAI47_11800	0.46	-0.8
2,503,870	+		IAI47_11800	0.46	-2.8
2,503,870	+		IAI47_11800	0.46	-0.8
2,503,870	+		IAI47_11800	0.46	-0.2
2,503,871	-		IAI47_11800	0.47	+2.4
2,503,871	-		IAI47_11800	0.47	+2.0
2,503,871	-		IAI47_11800	0.47	+1.0
2,503,917	-		IAI47_11800	0.51	+2.6
2,503,920	-		IAI47_11800	0.51	+0.3
2,503,934	+		IAI47_11800	0.52	-0.6
2,503,934	+		IAI47_11800	0.52	-2.4
2,503,996	+		IAI47_11800	0.58	+0.2
2,503,996	+		IAI47_11800	0.58	+1.1
2,503,996	+		IAI47_11800	0.58	-1.9
2,503,996	+		IAI47_11800	0.58	-1.4
2,503,996	+		IAI47_11800	0.58	+2.9
2,503,996	+		IAI47_11800	0.58	-2.0
2,503,996	+		IAI47_11800	0.58	+0.3
2,503,996	+		IAI47_11800	0.58	+1.0
2,503,997	-		IAI47_11800	0.58	+1.8
2,503,997	-		IAI47_11800	0.58	-1.0
2,503,997	-		IAI47_11800	0.58	-1.5
2,503,997	-		IAI47_11800	0.58	+1.2
2,503,997	-		IAI47_11800	0.58	+1.2
2,503,997	-		IAI47_11800	0.58	-0.2
2,503,997	-		IAI47_11800	0.58	+1.2
2,503,997	-		IAI47_11800	0.58	+0.9
2,503,997	-		IAI47_11800	0.58	-0.3
2,503,997	-		IAI47_11800	0.58	-2.2
2,504,035	+		IAI47_11800	0.61	-1.5
2,504,036	-		IAI47_11800	0.61	-0.7
2,504,036	-		IAI47_11800	0.61	+2.2
2,504,036	-		IAI47_11800	0.61	-0.8
2,504,070	-		IAI47_11800	0.64	+1.4
2,504,231	+		IAI47_11800	0.79	-1.2
2,504,246	+		IAI47_11800	0.80	+0.0
2,504,247	-		IAI47_11800	0.80	+0.7
2,504,247	-		IAI47_11800	0.80	+0.7
2,504,369	+				-0.2
2,504,370	-				-1.0
2,504,370	-				-0.5
2,504,370	-				+1.4
2,504,411	+				+0.7
2,504,411	+				-1.0
2,504,411	+				+0.0
2,504,411	+				-2.5
2,504,412	-				-1.0
2,504,412	-				+2.1
2,504,412	-				-0.2
2,504,450	+				+0.9
2,504,776	+		IAI47_11805	0.21	-0.2
2,504,776	+		IAI47_11805	0.21	+0.3
2,504,776	+		IAI47_11805	0.21	-1.5
2,504,776	+		IAI47_11805	0.21	-0.4
2,504,776	+		IAI47_11805	0.21	+0.0
2,504,813	-		IAI47_11805	0.23	+0.4
2,504,905	+		IAI47_11805	0.29	-0.6
2,504,906	-		IAI47_11805	0.29	-0.6
2,505,004	+		IAI47_11805	0.36	-2.3
2,505,005	-		IAI47_11805	0.36	-1.5
2,505,017	-		IAI47_11805	0.36	-0.4
2,505,017	-		IAI47_11805	0.36	-0.5
2,505,017	-		IAI47_11805	0.36	-0.4
2,505,042	+		IAI47_11805	0.38	+0.0
2,505,043	-		IAI47_11805	0.38	+0.8
2,505,043	-		IAI47_11805	0.38	+0.3
2,505,043	-		IAI47_11805	0.38	-2.3
2,505,043	-		IAI47_11805	0.38	+0.4
2,505,105	+		IAI47_11805	0.42	-2.0
2,505,105	+		IAI47_11805	0.42	+0.2
2,505,105	+		IAI47_11805	0.42	+1.6
2,505,105	+		IAI47_11805	0.42	-0.4
2,505,106	-		IAI47_11805	0.42	-0.3
2,505,106	-		IAI47_11805	0.42	+0.6
2,505,106	-		IAI47_11805	0.42	-1.0
2,505,137	-		IAI47_11805	0.44	+0.4
2,505,160	+		IAI47_11805	0.46	-1.8
2,505,160	+		IAI47_11805	0.46	-0.7
2,505,161	-		IAI47_11805	0.46	+0.9
2,505,161	-		IAI47_11805	0.46	+0.2
2,505,341	-		IAI47_11805	0.58	-0.7
2,505,341	-		IAI47_11805	0.58	-0.0
2,505,385	+		IAI47_11805	0.61	+3.3
2,505,385	+		IAI47_11805	0.61	-1.6
2,505,385	+		IAI47_11805	0.61	-0.4
2,505,386	-		IAI47_11805	0.61	+3.1
2,505,387	+		IAI47_11805	0.61	-1.3
2,505,388	-		IAI47_11805	0.61	+2.5
2,505,388	-		IAI47_11805	0.61	-0.0
2,505,397	+		IAI47_11805	0.62	+1.0