Strain Fitness in Pantoea sp. MT58 around IAI47_10695

Experiment: Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
2,262,686	-		IAI47_10685	0.76	-0.3
2,262,693	+		IAI47_10685	0.76	-0.0
2,262,693	+		IAI47_10685	0.76	-1.9
2,262,693	+		IAI47_10685	0.76	+0.5
2,262,694	-		IAI47_10685	0.76	-0.5
2,262,694	-		IAI47_10685	0.76	+0.5
2,262,694	-		IAI47_10685	0.76	+2.1
2,262,694	-		IAI47_10685	0.76	-0.7
2,262,694	-		IAI47_10685	0.76	+0.3
2,262,694	-		IAI47_10685	0.76	+0.7
2,262,694	-		IAI47_10685	0.76	-1.2
2,262,698	-		IAI47_10685	0.77	+0.9
2,262,726	-		IAI47_10685	0.79	-1.8
2,262,726	-		IAI47_10685	0.79	+0.4
2,262,726	-		IAI47_10685	0.79	-0.1
2,262,726	-		IAI47_10685	0.79	-0.8
2,262,726	-		IAI47_10685	0.79	-0.9
2,262,823	-		IAI47_10685	0.88	+1.0
2,262,860	+				-1.8
2,262,860	+				+0.5
2,262,860	+				-2.3
2,262,861	-				-1.3
2,262,861	-				+1.0
2,262,861	-				+0.8
2,262,959	-				+0.7
2,262,962	+				-0.9
2,262,962	+				-3.2
2,262,963	-				+0.7
2,262,986	-				+0.9
2,263,003	+				-0.7
2,263,003	+				-1.8
2,263,004	-				-1.1
2,263,007	+				-1.3
2,263,007	+				+0.1
2,263,008	-				+0.9
2,263,008	-				-0.1
2,263,008	-				+0.1
2,263,008	-				-1.9
2,263,011	-				-1.9
2,263,045	+				+0.7
2,263,050	-				-1.2
2,263,067	+				-1.5
2,263,068	-				-1.3
2,263,076	+				-1.0
2,263,101	-				-1.5
2,263,101	-				+0.7
2,263,168	-		IAI47_10690	0.21	+0.2
2,263,189	+		IAI47_10690	0.30	+1.0
2,263,189	+		IAI47_10690	0.30	-0.3
2,263,190	-		IAI47_10690	0.30	+0.5
2,263,190	-		IAI47_10690	0.30	-0.3
2,263,190	-		IAI47_10690	0.30	-1.5
2,263,190	-		IAI47_10690	0.30	+1.7
2,263,193	-		IAI47_10690	0.32	+0.7
2,263,211	+		IAI47_10690	0.39	+1.7
2,263,220	+		IAI47_10690	0.43	+0.2
2,263,230	-		IAI47_10690	0.47	+1.7
2,263,252	-		IAI47_10690	0.57	-0.5
2,263,325	+		IAI47_10690	0.88	+2.0
2,263,325	+		IAI47_10690	0.88	-2.3
2,263,326	-		IAI47_10690	0.88	-0.1
2,263,326	-		IAI47_10690	0.88	+0.4
2,263,326	-		IAI47_10690	0.88	-2.2
2,263,326	-		IAI47_10690	0.88	+0.5
2,263,374	+				+2.7
2,263,374	+				+1.5
2,263,375	-				-2.9
2,263,396	-				-0.7
2,263,401	+				+1.3
2,263,402	-				-0.5
2,263,410	+				+0.7
2,263,410	+				-0.9
2,263,452	-				-0.2
2,263,458	-				+3.2
2,263,480	+				-0.5
2,263,499	+				-1.5
2,263,499	+				-0.2
2,263,500	-				+0.2
2,263,500	-				+0.9
2,263,500	-				+2.4
2,263,503	+				-0.3
2,263,503	+				+2.4
2,263,504	-				-0.8
2,263,505	+				-0.3
2,263,537	+				+0.4
2,263,562	+				-0.3
2,263,568	+				+1.0
2,263,569	-				+0.7
2,263,582	-				+2.2
2,263,591	+				-2.3
2,263,591	+				-2.0
2,263,592	-				+0.2
2,263,629	+				-2.4
2,263,639	+				+3.2
2,263,692	+				+1.5
2,263,768	+		IAI47_10695	0.24	-1.8
2,263,768	+		IAI47_10695	0.24	+0.2
2,263,769	-		IAI47_10695	0.24	-0.7
2,263,773	-		IAI47_10695	0.25	-2.6
2,263,839	+		IAI47_10695	0.38	-1.8
2,263,839	+				+1.7
2,263,840	-		IAI47_10695	0.38	-0.6
2,263,840	-		IAI47_10695	0.38	-1.5
2,263,869	+		IAI47_10695	0.43	+0.1
2,263,869	+		IAI47_10695	0.43	+0.7
2,263,877	+		IAI47_10695	0.45	+0.5
2,263,877	+		IAI47_10695	0.45	-1.0
2,263,877	+		IAI47_10695	0.45	+0.8
2,263,877	+		IAI47_10695	0.45	+2.4
2,263,877	+		IAI47_10695	0.45	-1.3
2,263,877	+		IAI47_10695	0.45	-2.3
2,263,877	+		IAI47_10695	0.45	-0.9
2,263,878	-		IAI47_10695	0.45	+0.1
2,263,892	+		IAI47_10695	0.48	-0.7
2,263,892	+		IAI47_10695	0.48	-0.3
2,263,892	+		IAI47_10695	0.48	-0.3
2,263,893	-		IAI47_10695	0.48	-1.2
2,263,893	-		IAI47_10695	0.48	+0.7
2,263,893	-		IAI47_10695	0.48	+0.5
2,263,893	-		IAI47_10695	0.48	+1.1
2,263,893	-		IAI47_10695	0.48	+1.7
2,263,893	-		IAI47_10695	0.48	-1.9
2,263,893	-		IAI47_10695	0.48	-1.7
2,263,896	+		IAI47_10695	0.49	-0.2
2,263,896	+		IAI47_10695	0.49	-0.8
2,263,896	+		IAI47_10695	0.49	-0.8
2,263,896	+		IAI47_10695	0.49	-0.8
2,263,897	-		IAI47_10695	0.49	-1.8
2,263,897	-		IAI47_10695	0.49	+0.3
2,263,897	-		IAI47_10695	0.49	+0.1
2,263,898	+		IAI47_10695	0.49	-1.2
2,263,899	-		IAI47_10695	0.49	-2.3
2,263,899	-		IAI47_10695	0.49	+1.2
2,263,942	+		IAI47_10695	0.57	-0.3
2,263,942	+		IAI47_10695	0.57	-0.3
2,263,942	+		IAI47_10695	0.57	-1.4
2,263,942	+		IAI47_10695	0.57	-0.7
2,263,943	-		IAI47_10695	0.58	-1.2
2,263,978	-		IAI47_10695	0.64	-1.3
2,263,994	+		IAI47_10695	0.67	-1.6
2,264,106	-		IAI47_10695	0.89	+2.2
2,264,114	+				-1.5
2,264,114	+				+0.7
2,264,123	+				+1.4
2,264,124	-				-0.6
2,264,124	-				-2.0
2,264,124	-				+1.2
2,264,157	-				+0.3
2,264,163	+				+2.4
2,264,164	-				+2.2
2,264,164	-				-3.0
2,264,167	+				+1.6
2,264,167	+				-2.8
2,264,168	-				-0.6
2,264,168	-				-0.3
2,264,224	+				-0.1
2,264,225	-				+0.4
2,264,263	+				+0.3
2,264,264	-				-1.3
2,264,264	-				-0.7
2,264,282	+				+0.2
2,264,282	+				-1.5
2,264,283	-				+0.0
2,264,283	-				-0.8
2,264,296	+				-0.0
2,264,297	-				-0.9
2,264,297	-				-1.7
2,264,297	-				+0.9
2,264,297	-				-2.6
2,264,297	-				+0.4
2,264,297	-				-1.3
2,264,357	-				-0.0
2,264,447	+		IAI47_10700	0.15	-1.2
2,264,480	-		IAI47_10700	0.18	-1.2
2,264,480	-		IAI47_10700	0.18	-1.5
2,264,504	+		IAI47_10700	0.20	+1.1
2,264,505	-		IAI47_10700	0.20	+1.0
2,264,566	+		IAI47_10700	0.25	-0.9
2,264,567	-		IAI47_10700	0.25	-1.8
2,264,613	-		IAI47_10700	0.29	-0.1
2,264,624	+		IAI47_10700	0.30	+0.7
2,264,624	+		IAI47_10700	0.30	+2.0
2,264,624	+		IAI47_10700	0.30	+0.1
2,264,624	+		IAI47_10700	0.30	-2.3
2,264,624	+		IAI47_10700	0.30	+3.8
2,264,684	+		IAI47_10700	0.35	+1.5
2,264,684	+		IAI47_10700	0.35	+0.1
2,264,685	-		IAI47_10700	0.35	-1.7
2,264,685	-		IAI47_10700	0.35	-0.3
2,264,685	-		IAI47_10700	0.35	-0.3
2,264,797	+		IAI47_10700	0.44	+0.6
2,264,906	+		IAI47_10700	0.53	-0.2
2,264,906	+		IAI47_10700	0.53	-1.9
2,264,906	+		IAI47_10700	0.53	-0.3
2,264,906	+		IAI47_10700	0.53	+1.7
2,264,927	-		IAI47_10700	0.55	+1.1
2,265,079	+		IAI47_10700	0.67	-0.3
2,265,079	+		IAI47_10700	0.67	+0.4
2,265,080	-		IAI47_10700	0.67	-1.7
2,265,080	-		IAI47_10700	0.67	+1.3
2,265,080	-		IAI47_10700	0.67	-0.8
2,265,136	+		IAI47_10700	0.72	+3.2